| 1. | Super Mario Bros. | 586,694 | 15.68% | 4,529 | 3:09:27:03 |
| 2. | Wario Land 3 | 223,024 | 5.96% | 107 | 5:30:33 |
| 3. | Pokémon Black 2 and White 2 | 178,672 | 4.78% | 3,487 | 13:10:17:19 |
| 4. | Dr. Mario | 142,670 | 3.81% | 210 | 10:00:23 |
| 5. | Wario Land II | 138,161 | 3.69% | 116 | 12:51:30 |
| 6. | Super Mario World | 134,378 | 3.59% | 798 | 1:05:20:35 |
| 7. | Donkey Kong Country 2 | 123,792 | 3.31% | 124 | 7:18:37 |
| 8. | Super Mario Advance 4: Super Mario Bros. 3 | 122,872 | 3.28% | 131 | 4:24:55 |
| 9. | Donkey Kong Land III | 121,263 | 3.24% | 88 | 4:18:22 |
| 10. | Super Mario Bros.: The Lost Levels | 91,841 | 2.45% | 155 | 3:28:03 |
| 11. | Pokémon Diamond and Pearl | 85,317 | 2.28% | 658 | 2:19:08:02 |
| 12. | Pokémon HeartGold and SoulSilver | 77,206 | 2.06% | 1,386 | 6:02:24:43 |
| 13. | The Legend of Zelda | 76,951 | 2.06% | 184 | 19:37:59 |
| 14. | Donkey Kong Country 3 | 75,385 | 2.01% | 120 | 6:47:17 |
| 15. | Yoshi's Island: Super Mario Advance 3 | 74,028 | 1.98% | 64 | 6:31:09 |
| 16. | Super Mario World: Super Mario Advance 2 | 72,143 | 1.93% | 106 | 3:55:37 |
| 17. | Pokémon Platinum | 71,358 | 1.91% | 602 | 2:12:41:26 |
| 18. | Super Mario All-Stars | 68,747 | 1.84% | 169 | 4:43:45 |
| 19. | Donkey Kong Land 2 | 66,604 | 1.78% | 47 | 2:07:08 |
| 20. | Pokémon Red and Blue | 65,430 | 1.75% | 561 | 1:19:43:16 |
| 21. | New Super Mario Bros. | 64,567 | 1.73% | 102 | 4:16:20 |
| 22. | Pokémon Emerald | 62,916 | 1.68% | 439 | 1:21:26:42 |
| 23. | Super Mario Bros. 2 | 60,990 | 1.63% | 200 | 8:46:40 |
| 24. | Super Mario Bros. 3 | 56,728 | 1.52% | 391 | 11:06:21 |
| 25. | Pokémon Gold and Silver | 53,533 | 1.43% | 770 | 3:00:22:26 |
| 26. | Donkey Kong Country | 47,250 | 1.26% | 150 | 5:41:27 |
| 27. | Pokémon Black and White | 43,796 | 1.17% | 961 | 4:02:52:46 |
| 28. | Wario Land: Super Mario Land 3 | 43,585 | 1.16% | 48 | 2:33:47 |
| 29. | Pokémon Crystal | 41,715 | 1.11% | 348 | 1:11:10:28 |
| 30. | Pokémon FireRed and LeafGreen | 40,751 | 1.09% | 588 | 2:03:45:54 |
| 31. | Pokémon Ruby and Sapphire | 38,448 | 1.03% | 480 | 1:19:23:26 |
| 32. | Wario Land 4 | 37,686 | 1.01% | 26 | 2:49:58 |
| 33. | Super Mario Land | 33,318 | 0.89% | 104 | 3:58:41 |
| 34. | Donkey Kong Land | 31,112 | 0.83% | 35 | 1:08:43 |
| 35. | Super Mario Land 2: 6 Golden Coins | 29,610 | 0.79% | 78 | 3:04:56 |
| 36. | Super Contra | 29,547 | 0.79% | 34 | 1:23:30 |
| 37. | Mario Kart: Super Circuit | 27,913 | 0.75% | 41 | 1:23:31 |
| 38. | Pokémon Yellow | 26,069 | 0.70% | 228 | 17:20:22 |
| 39. | Super Mario Bros. Deluxe | 24,899 | 0.67% | 137 | 3:11:51 |
| 40. | The Legend of Zelda: A Link to the Past | 22,002 | 0.59% | 35 | 1:34:25 |
| 41. | The Legend of Zelda: Link's Awakening | 19,772 | 0.53% | 63 | 1:42:22 |
| 42. | Mario Bros. | 19,543 | 0.52% | 192 | 3:18:56 |
| 43. | Super Mario Kart | 18,764 | 0.50% | 121 | 4:30:06 |
| 44. | Super Mario Advance | 17,278 | 0.46% | 41 | 3:14:17 |
| 45. | Kirby Super Star | 16,913 | 0.45% | 44 | 2:47:12 |
| 46. | Arkanoid | 16,031 | 0.43% | 36 | 36:27 |
| 47. | The Amazing Spider-Man | 13,454 | 0.36% | 8 | 23:21 |
| 48. | Kirby's Dream Land 3 | 11,835 | 0.32% | 43 | 2:50:51 |
| 49. | Salamander | 11,201 | 0.30% | 12 | 47:31 |
| 50. | DuckTales | 10,598 | 0.28% | 6 | 32:42 |
| 51. | Super Mario World 2: Yoshi's Island | 10,436 | 0.28% | 57 | 5:20:29 |
| 52. | Mega Man | 10,380 | 0.28% | 118 | 6:01:25 |
| 53. | Contra Force | 10,040 | 0.27% | 7 | 30:13 |
| 54. | All Night Nippon Super Mario Bros. | 9,141 | 0.24% | 48 | 1:00:18 |
| 55. | Kirby: Squeak Squad | 7,094 | 0.19% | 53 | 2:30:29 |
| 56. | Contra: The Alien Wars | 7,015 | 0.19% | 7 | 18:41 |
| 57. | The Legend of Zelda: Oracle of Ages | 6,831 | 0.18% | 35 | 1:32:06 |
| 58. | Super Princess Peach | 6,677 | 0.18% | 70 | 1:49:53 |
| 59. | Mega Man 2 | 6,056 | 0.16% | 123 | 6:39:16 |
| 60. | Kirby's Adventure | 5,993 | 0.16% | 49 | 1:35:04 |
| 61. | The Legend of Zelda: Oracle of Seasons | 5,970 | 0.16% | 29 | 54:00 |
| 62. | Kirby: Nightmare in Dream Land | 5,756 | 0.15% | 49 | 1:19:48 |
| 63. | Zelda II: The Adventure of Link | 5,695 | 0.15% | 10 | 11:52 |
| 64. | Operation C | 4,985 | 0.13% | 6 | 17:59 |
| 65. | Kirby's Dream Land 2 | 4,430 | 0.12% | 46 | 1:34:49 |
| 66. | Mega Man 3 | 4,413 | 0.12% | 40 | 2:03:18 |
| 67. | F-Zero | 4,405 | 0.12% | 106 | 6:36:35 |
| 68. | Adventure Island | 4,154 | 0.11% | 128 | 4:16:19 |
| 69. | Mega Man 5 | 2,978 | 0.08% | 71 | 4:19:45 |
| 70. | Vs. Super Mario Bros. | 2,814 | 0.08% | 31 | 34:38 |
| 71. | Mortal Kombat | 2,730 | 0.07% | 20 | 17:01 |
| 72. | Kirby's Dream Land | 2,505 | 0.07% | 22 | 1:28:17 |
| 73. | Mega Man 6 | 2,269 | 0.06% | 22 | 1:13:40 |
| 74. | Mega Man IV | 2,247 | 0.06% | 15 | 1:09:27 |
| 75. | Contra | 2,157 | 0.06% | 1 | 2:52 |
| 76. | Doki Doki Panic | 2,127 | 0.06% | 21 | 1:00:55 |
| 77. | Adventure Island II | 1,927 | 0.05% | 81 | 1:24:53 |
| 78. | Adventure Island 3 | 1,780 | 0.05% | 65 | 1:11:45 |
| 79. | Journey to Silius | 1,688 | 0.05% | 18 | 1:04:00 |
| 80. | Mega Man Xtreme 2 | 1,362 | 0.04% | 16 | 1:23:33 |
| 81. | Donald Land | 1,245 | 0.03% | 28 | 1:02:37 |
| 82. | Panic! | 1,139 | 0.03% | 20 | 52:38 |
| 83. | Mega Man 4 | 1,038 | 0.03% | 18 | 1:05:24 |
| 84. | The Pyramid | 940 | 0.03% | 2 | 6:12 |
| 85. | Yo! Noid | 898 | 0.02% | 15 | 37:14 |
| 86. | Shadow of the Ninja | 898 | 0.02% | 14 | 51:59 |
| 87. | Fortress 2 | 770 | 0.02% | 9 | 10:30 |
| 88. | Amagon | 730 | 0.02% | 12 | 28:15 |
| 89. | Mega Man III | 712 | 0.02% | 12 | 48:14 |
| 90. | Mega Man Xtreme | 706 | 0.02% | 15 | 1:05:47 |
| 91. | Kid Dracula | 682 | 0.02% | 10 | 32:24 |
| 92. | Gun.Smoke | 664 | 0.02% | 8 | 26:53 |
| 93. | Mega Man II | 662 | 0.02% | 11 | 35:32 |
| 94. | Mega Man V | 641 | 0.02% | 15 | 1:18:30 |
| 95. | Final Fantasy V | 638 | 0.02% | 75 | 4:37:13 |
| 96. | Batman: Return of the Joker | 580 | 0.02% | 9 | 21:30 |
| 97. | Blob | 577 | 0.02% | 8 | 25:20 |
| 98. | Bad Dudes | 568 | 0.02% | 8 | 24:35 |
| 99. | DuckTales 2 | 565 | 0.02% | 8 | 41:10 |
| 100. | Darkwing Duck | 561 | 0.01% | 8 | 47:13 |
