| 1. | Punch-Out!! | 908,847 | 20.13% | 33 | 2:48:56 |
| 2. | WarioWare: Smooth Moves | 755,740 | 16.74% | 39 | 3:12:05 |
| 3. | Super Paper Mario | 335,737 | 7.44% | 88 | 12:53:20 |
| 4. | Wario Land 4 | 322,269 | 7.14% | 111 | 16:20:19 |
| 5. | Silent Hill: Shattered Memories | 157,411 | 3.49% | 29 | 3:34:55 |
| 6. | Mario & Luigi: Bowser's Inside Story | 117,800 | 2.61% | 4 | 14:47 |
| 7. | WarioWare: Touched! | 110,150 | 2.44% | 19 | 1:32:35 |
| 8. | Wario Land II | 81,103 | 1.80% | 73 | 19:24:51 |
| 9. | WarioWare, Inc.: Mega Microgames! | 79,500 | 1.76% | 18 | 1:41:03 |
| 10. | Punch-Out!! | 67,357 | 1.49% | 4 | 13:49 |
| 11. | Wario Land 3 | 59,559 | 1.32% | 45 | 10:45:24 |
| 12. | Paper Mario: The Thousand-Year Door | 55,768 | 1.24% | 2 | 9:12 |
| 13. | Wario Land: Super Mario Land 3 | 54,352 | 1.20% | 52 | 3:28:12 |
| 14. | Super Mario Kart | 39,171 | 0.87% | 27 | 3:29:14 |
| 15. | Ghost Trick: Phantom Detective | 37,400 | 0.83% | 21 | 14:38:55 |
| 16. | American McGee's Alice | 36,034 | 0.80% | 37 | 4:10:08 |
| 17. | Metroid: Zero Mission | 34,733 | 0.77% | 23 | 3:06:59 |
| 18. | Super Mario Land | 32,605 | 0.72% | 31 | 1:26:06 |
| 19. | New Super Mario Bros. Wii | 30,566 | 0.68% | 18 | 1:12:17 |
| 20. | WarioWare: Twisted! | 30,457 | 0.67% | 4 | 11:26 |
| 21. | Super Mario 64 | 26,680 | 0.59% | 3 | 14:58 |
| 22. | Super Mario World | 26,673 | 0.59% | 3 | 11:36 |
| 23. | Super Mario Land 2: 6 Golden Coins | 23,976 | 0.53% | 35 | 1:43:06 |
| 24. | Mario Kart 8 | 21,017 | 0.47% | 72 | 2:07:01:25 |
| 25. | Mario Kart: Super Circuit | 20,373 | 0.45% | 15 | 1:50:04 |
| 26. | Metroid Prime 2: Echoes | 18,410 | 0.41% | 2 | 8:41 |
| 27. | Donkey Kong Country | 15,514 | 0.34% | 4 | 7:27:39 |
| 28. | Conker's Bad Fur Day | 13,496 | 0.30% | 6 | 15:46:26 |
| 29. | F-Zero GX | 12,128 | 0.27% | 2 | 4:03:04 |
| 30. | Pac-Mania | 11,114 | 0.25% | 1 | 4:22 |
| 31. | Yoshi's Island | 10,645 | 0.24% | 33 | 6:15:21 |
| 32. | Shantae | 10,171 | 0.23% | 2 | 8:03 |
| 33. | Super Mario RPG | 9,986 | 0.22% | 1 | 4:00 |
| 34. | Rhythm Tengoku | 9,454 | 0.21% | 49 | 2:17:39 |
| 35. | One Chance | 9,412 | 0.21% | 1 | 2:47 |
| 36. | Donkey Kong 64 | 9,232 | 0.20% | 10 | 2:03:18:45 |
| 37. | Donkey Kong Country 2 | 9,179 | 0.20% | 6 | 12:35:35 |
| 38. | Metroid Fusion | 8,637 | 0.19% | 1 | 2:57 |
| 39. | Crash Bandicoot: Warped | 6,138 | 0.14% | 2 | 7:40 |
| 40. | Virtual Boy Wario Land | 6,042 | 0.13% | 6 | 11:10:45 |
| 41. | Super Castlevania IV | 5,753 | 0.13% | 2 | 9:15 |
| 42. | Pokémon HeartGold and SoulSilver | 5,699 | 0.13% | 2 | 1:00:21 |
| 43. | Pokémon Trading Card Game | 5,634 | 0.12% | 3 | 14:48 |
| 44. | Metal Gear 2: Solid Snake | 5,086 | 0.11% | 1 | 5:42 |
| 45. | Adventure Island II | 4,789 | 0.11% | 1 | 3:32 |
| 46. | Fire Emblem: Shadow Dragon | 4,788 | 0.11% | 1 | 3:00 |
| 47. | Super Mario Advance | 4,744 | 0.11% | 22 | 4:25:14 |
| 48. | Rhythm Heaven | 4,699 | 0.10% | 4 | 13:52 |
| 49. | Pokémon Black and White | 4,624 | 0.10% | 4 | 14:38 |
| 50. | Dr. Mario | 4,415 | 0.10% | 2 | 6:27 |
| 51. | Nine Hours, Nine Persons, Nine Doors | 4,321 | 0.10% | 12 | 2:01:17:20 |
| 52. | Donkey Kong Country 3 | 4,245 | 0.09% | 5 | 15:12:30 |
| 53. | The Legend of Zelda | 4,204 | 0.09% | 6 | 6:28:33 |
| 54. | Donkey Kong Land | 3,999 | 0.09% | 2 | 7:36 |
| 55. | Mario Kart: Double Dash!! | 3,942 | 0.09% | 1 | 5:25 |
| 56. | The White Door | 3,781 | 0.08% | 1 | 6:44 |
| 57. | Metroid Prime | 3,572 | 0.08% | 34 | 5:24:16 |
| 58. | Sonic the Hedgehog 3 | 3,503 | 0.08% | 2 | 6:02 |
| 59. | Kirby 64: The Crystal Shards | 3,365 | 0.07% | 1 | 3:21 |
| 60. | Banjo-Kazooie | 3,363 | 0.07% | 1 | 1:28 |
| 61. | F-Zero | 3,340 | 0.07% | 1 | 3:51 |
| 62. | Wario: Master of Disguise | 3,332 | 0.07% | 1 | 4:02 |
| 63. | Pokémon FireRed and LeafGreen | 3,054 | 0.07% | 6 | 18:15:57 |
| 64. | Alice: Madness Returns | 2,990 | 0.07% | 11 | 5:15:25 |
| 65. | Pokémon Black 2 and White 2 | 2,924 | 0.06% | 1 | 4:15 |
| 66. | Pac-Man World 2 | 2,921 | 0.06% | 6 | 11:13:06 |
| 67. | Tetris | 2,891 | 0.06% | 1 | 4:48 |
| 68. | Pokémon Pinball | 2,798 | 0.06% | 1 | 2:45 |
| 69. | Super Mario Advance 4: Super Mario Bros. 3 | 2,707 | 0.06% | 2 | 7:58:08 |
| 70. | Apollo Justice: Ace Attorney | 2,694 | 0.06% | 1 | 3:37 |
| 71. | Wario Land: Shake It! | 2,683 | 0.06% | 10 | 1:03:36:22 |
| 72. | Bomberman 64 | 2,673 | 0.06% | 1 | 5:08 |
| 73. | Donkey Kong '94 | 2,649 | 0.06% | 3 | 5:40:20 |
| 74. | Undertale | 2,612 | 0.06% | 9 | 1:01:49:39 |
| 75. | Fire Emblem | 2,453 | 0.05% | 2 | 6:43 |
| 76. | Crash Bandicoot 2: Cortex Strikes Back | 2,322 | 0.05% | 1 | 3:28 |
| 77. | Super Mario Maker | 2,224 | 0.05% | 6 | 9:13:35 |
| 78. | Mario Clash | 2,196 | 0.05% | 1 | 2:42 |
| 79. | Animal Crossing | 2,121 | 0.05% | 1 | 3:55 |
| 80. | The Legend of Zelda: Breath of the Wild | 2,118 | 0.05% | 1 | 3:18 |
| 81. | Zero Escape: Virtue's Last Reward | 2,018 | 0.04% | 16 | 2:17:20:49 |
| 82. | SKYE | 2,011 | 0.04% | 1 | 2:41 |
| 83. | New Super Mario Bros. | 1,953 | 0.04% | 1 | 2:44 |
| 84. | Wario Blast | 1,894 | 0.04% | 2 | 16:08 |
| 85. | Phoenix Wright: Ace Attorney | 1,849 | 0.04% | 1 | 2:36 |
| 86. | DJ Hero | 1,799 | 0.04% | 9 | 2:25:52 |
| 87. | Gradius III | 1,786 | 0.04% | 2 | 7:38 |
| 88. | Pokémon Stadium | 1,779 | 0.04% | 1 | 3:10 |
| 89. | Metroid Prime: Trilogy | 1,763 | 0.04% | 19 | 5:26:22 |
| 90. | Crash Team Racing | 1,665 | 0.04% | 3 | 10:23:12 |
| 91. | Pokémon Go | 1,644 | 0.04% | 1 | 3:14 |
| 92. | Super Smash Bros. | 1,599 | 0.04% | 31 | 7:16:48 |
| 93. | Pokémon Ruby and Sapphire | 1,524 | 0.03% | 1 | 3:24 |
| 94. | Luigi's Mansion | 1,515 | 0.03% | 3 | 5:24:25 |
| 95. | Sonic the Hedgehog | 1,475 | 0.03% | 1 | 2:17 |
| 96. | The Legend of Zelda: Spirit Tracks | 1,454 | 0.03% | 1 | 4:25 |
| 97. | The Elder Scrolls: Arena | 1,437 | 0.03% | 1 | 3:06 |
| 98. | Castle of Doom | 1,329 | 0.03% | 1 | 6:30 |
| 99. | Super Mario Bros. | 1,311 | 0.03% | 9 | 1:27:16 |
| 100. | The Powerpuff Girls: Bad Mojo Jojo | 1,251 | 0.03% | 1 | 4:01 |
