| 1. | Pokémon FireRed and LeafGreen | 1,542,753 | 15.71% | 43 | 12:15:26 |
| 2. | Mega Man X3 | 1,203,372 | 12.25% | 54 | 4:23:02 |
| 3. | Kirby: Nightmare in Dream Land | 631,829 | 6.43% | 4 | 1:32:02 |
| 4. | Kirby Super Star Ultra | 519,195 | 5.29% | 19 | 4:28:43 |
| 5. | Wario: Master of Disguise | 260,194 | 2.65% | 25 | 7:08:14 |
| 6. | Mega Man 8 | 239,232 | 2.44% | 50 | 4:36:32 |
| 7. | Frogger 2: Swampy's Revenge | 231,325 | 2.36% | 12 | 2:42:33 |
| 8. | Mega Man 7 | 153,827 | 1.57% | 42 | 3:50:06 |
| 9. | Bomberman Max 2 | 134,526 | 1.37% | 40 | 4:09:55 |
| 10. | Charlie and the Chocolate Factory | 123,455 | 1.26% | 11 | 2:02:55 |
| 11. | Madagascar: Operation Penguin | 119,223 | 1.21% | 23 | 2:15:37 |
| 12. | Mega Man X2 | 110,328 | 1.12% | 28 | 2:03:25 |
| 13. | Frogger's Adventures: Temple of the Frog | 109,831 | 1.12% | 29 | 2:09:32 |
| 14. | Bomberman GB | 106,104 | 1.08% | 29 | 2:14:51 |
| 15. | Pocket Bomberman | 104,553 | 1.06% | 24 | 1:02:16 |
| 16. | Pokémon Emerald | 94,898 | 0.97% | 51 | 13:05:30 |
| 17. | Sonic Lost World | 77,833 | 0.79% | 15 | 3:33:35 |
| 18. | Spyro: Attack of the Rhynocs | 60,339 | 0.61% | 14 | 3:36:40 |
| 19. | Spyro 2: Season of Flame | 60,200 | 0.61% | 13 | 3:58:44 |
| 20. | Mega Man X8 | 53,324 | 0.54% | 34 | 3:11:39 |
| 21. | Sonic the Hedgehog 4: Episode I | 52,407 | 0.53% | 24 | 29:09 |
| 22. | Earthworm Jim 2 | 49,096 | 0.50% | 10 | 30:52 |
| 23. | Castlevania: Harmony of Dissonance | 48,583 | 0.49% | 22 | 4:39:47 |
| 24. | Street Fighter EX3 | 45,590 | 0.46% | 1 | 10:30 |
| 25. | Pokémon Platinum | 37,877 | 0.39% | 63 | 16:34:13 |
| 26. | Super Mario Advance 4: Super Mario Bros. 3 | 32,782 | 0.33% | 21 | 5:11:36 |
| 27. | Bomberman Max | 32,600 | 0.33% | 36 | 3:19:37 |
| 28. | Sonic Advance | 30,973 | 0.32% | 46 | 3:18:50 |
| 29. | Frogger's Journey: The Forgotten Relic | 29,514 | 0.30% | 12 | 3:09:58 |
| 30. | Castlevania: Portrait of Ruin | 28,233 | 0.29% | 26 | 6:29:32 |
| 31. | Sonic Rush | 27,887 | 0.28% | 17 | 3:50:42 |
| 32. | Castlevania: Circle of the Moon | 26,800 | 0.27% | 18 | 3:37:04 |
| 33. | Bugdom | 25,083 | 0.26% | 7 | 1:15:20 |
| 34. | Sonic Advance 3 | 24,070 | 0.25% | 20 | 4:46:13 |
| 35. | Mega Man 2 | 23,786 | 0.24% | 9 | 1:51:29 |
| 36. | Mario & Luigi: Superstar Saga | 23,396 | 0.24% | 33 | 8:48:29 |
| 37. | Super Mario World | 22,366 | 0.23% | 116 | 1:05:43:02 |
| 38. | Mario & Luigi: Partners in Time | 22,197 | 0.23% | 33 | 7:51:24 |
| 39. | Spyro: Year of the Dragon | 21,533 | 0.22% | 33 | 7:55:22 |
| 40. | Mega Man Xtreme | 21,314 | 0.22% | 21 | 1:35:04 |
| 41. | To The Rescue! | 21,311 | 0.22% | 1 | 11:51 |
| 42. | Mega Man ZX Advent | 20,889 | 0.21% | 41 | 11:14:51 |
| 43. | Pokémon Crystal | 19,668 | 0.20% | 42 | 10:19:24 |
| 44. | Castlevania: Dawn of Sorrow | 19,665 | 0.20% | 46 | 7:41:03 |
| 45. | Banjo-Kazooie | 19,098 | 0.19% | 26 | 6:51:50 |
| 46. | Sonic CD | 18,939 | 0.19% | 7 | 51:49 |
| 47. | Super Mario World 2: Yoshi's Island | 18,763 | 0.19% | 25 | 2:34:01 |
| 48. | Mega Man X6 | 18,618 | 0.19% | 26 | 2:29:19 |
| 49. | Mega Man X5 | 18,462 | 0.19% | 40 | 5:11:58 |
| 50. | Spyro: Season of Ice | 17,964 | 0.18% | 15 | 3:16:54 |
| 51. | Super Princess Peach | 17,402 | 0.18% | 25 | 6:23:01 |
| 52. | Pokémon Black 2 and White 2 | 16,134 | 0.16% | 71 | 17:52:07 |
| 53. | Frogger | 15,953 | 0.16% | 27 | 4:39:07 |
| 54. | Pokémon Black and White | 15,947 | 0.16% | 60 | 15:10:16 |
| 55. | Mega Man Xtreme 2 | 15,239 | 0.16% | 18 | 1:40:16 |
| 56. | Donkey Kong Land 2 | 15,003 | 0.15% | 18 | 4:45:49 |
| 57. | Lego Island 2: The Brickster's Revenge | 14,819 | 0.15% | 7 | 1:54:23 |
| 58. | The Legend of Zelda: Oracle of Seasons | 14,038 | 0.14% | 25 | 6:21:55 |
| 59. | Sonic Colors | 13,463 | 0.14% | 20 | 5:03:52 |
| 60. | DK: King of Swing | 12,565 | 0.13% | 11 | 1:55:59 |
| 61. | Diddy Kong Racing | 11,214 | 0.11% | 19 | 3:57:49 |
| 62. | Paper Mario: The Thousand-Year Door | 10,007 | 0.10% | 72 | 20:35:09 |
| 63. | Mega Man IV | 9,834 | 0.10% | 5 | 1:20:15 |
| 64. | Castlevania: Aria of Sorrow | 9,706 | 0.10% | 19 | 3:42:06 |
| 65. | Super Smash Bros. Ultimate | 9,692 | 0.10% | 20 | 4:49:05 |
| 66. | The Clue! | 9,675 | 0.10% | 5 | 1:04:04 |
| 67. | The Legend of Zelda: Oracle of Ages | 9,656 | 0.10% | 32 | 8:37:52 |
| 68. | Wario Land II | 9,618 | 0.10% | 23 | 5:27:47 |
| 69. | Sonic Spinball | 9,579 | 0.10% | 3 | 52:02 |
| 70. | Kirby's Dream Land 3 | 8,948 | 0.09% | 12 | 2:38:14 |
| 71. | Sonic Adventure 2 | 8,820 | 0.09% | 20 | 5:01:55 |
| 72. | Yoshi's Island: Super Mario Advance 3 | 8,502 | 0.09% | 20 | 5:22:57 |
| 73. | Sonic the Hedgehog 2 | 8,465 | 0.09% | 26 | 2:37:37 |
| 74. | Donkey Kong Land III | 8,111 | 0.08% | 6 | 2:21:48 |
| 75. | Donkey Kong Country 3 | 8,110 | 0.08% | 24 | 7:14:03 |
| 76. | Super Mario Advance | 7,977 | 0.08% | 10 | 2:20:12 |
| 77. | Mega Man X7 | 7,903 | 0.08% | 30 | 3:28:08 |
| 78. | Donkey Kong Country 2 | 7,844 | 0.08% | 32 | 6:56:04 |
| 79. | Super Mario Galaxy | 7,774 | 0.08% | 38 | 9:35:09 |
| 80. | Mega Man X4 | 7,378 | 0.08% | 32 | 4:13:15 |
| 81. | Banjo-Tooie | 7,300 | 0.07% | 55 | 14:41:08 |
| 82. | Super Mario Bros. | 7,259 | 0.07% | 19 | 4:17:59 |
| 83. | Kirby's Epic Yarn | 7,203 | 0.07% | 32 | 8:11:41 |
| 84. | Wario Land 3 | 6,824 | 0.07% | 17 | 4:22:51 |
| 85. | Super Bomberman 5 | 6,767 | 0.07% | 8 | 1:32:52 |
| 86. | Sonic Rush Adventure | 6,765 | 0.07% | 15 | 3:55:02 |
| 87. | Shantae | 6,560 | 0.07% | 13 | 3:27:22 |
| 88. | Pokémon XD: Gale of Darkness | 6,279 | 0.06% | 57 | 15:06:30 |
| 89. | Shrek 2 | 6,071 | 0.06% | 6 | 1:34:23 |
| 90. | Mega Man Legends | 6,021 | 0.06% | 24 | 6:47:15 |
| 91. | Mega Man V | 5,811 | 0.06% | 4 | 1:07:19 |
| 92. | Mega Man Zero 2 | 5,803 | 0.06% | 7 | 2:01:19 |
| 93. | Mega Man X | 5,747 | 0.06% | 31 | 2:06:43 |
| 94. | Mario Bros. | 5,739 | 0.06% | 19 | 4:35:09 |
| 95. | Kirby & the Amazing Mirror | 5,738 | 0.06% | 17 | 4:13:15 |
| 96. | Donkey Kong Country | 5,641 | 0.06% | 20 | 4:25:11 |
| 97. | Sonic the Hedgehog | 5,492 | 0.06% | 25 | 2:11:14 |
| 98. | Yoshi's Universal Gravitation | 5,339 | 0.05% | 1 | 10:45 |
| 99. | Harry Potter and the Chamber of Secrets | 5,338 | 0.05% | 13 | 3:36:48 |
| 100. | Spyro the Dragon | 5,333 | 0.05% | 16 | 3:58:56 |
