| 1. | Altered Beast | 108,870 | 6.50% | 4 | 12:14 |
| 2. | Mobile Suit Gundam SEED: Battle Assault | 87,694 | 5.23% | 5 | 1:11:41 |
| 3. | Desert Strike | 84,278 | 5.03% | 5 | 2:21:04 |
| 4. | Sigma Star Saga | 55,500 | 3.31% | 40 | 9:11:54 |
| 5. | Sailor Moon | 43,462 | 2.59% | 6 | 3:50:50 |
| 6. | Airwolf | 33,153 | 1.98% | 3 | 48:30 |
| 7. | Teenage Mutant Ninja Turtles: Tournament Fighters | 30,334 | 1.81% | 3 | 1:29:24 |
| 8. | Mega Man 2 | 30,318 | 1.81% | 61 | 12:58:15 |
| 9. | AM2R | 25,765 | 1.54% | 25 | 9:21:15 |
| 10. | Prince of Persia | 24,655 | 1.47% | 39 | 2:32:49 |
| 11. | Lufia: The Ruins of Lore | 24,482 | 1.46% | 43 | 21:37:53 |
| 12. | Mega Man 3 | 24,083 | 1.44% | 65 | 10:39:31 |
| 13. | Metal Gear Solid | 23,936 | 1.43% | 20 | 11:01:48 |
| 14. | Retro Game Challenge | 22,414 | 1.34% | 2 | 51:54 |
| 15. | Battle B-Daman | 22,192 | 1.32% | 15 | 3:58:19 |
| 16. | Mega Man | 18,630 | 1.11% | 67 | 1:04:31:30 |
| 17. | Suikoden: Tierkreis | 17,744 | 1.06% | 106 | 1:01:40:51 |
| 18. | Zelda II: The Adventure of Link | 16,924 | 1.01% | 24 | 3:44:39 |
| 19. | The Legend of Zelda: The Minish Cap | 14,060 | 0.84% | 29 | 5:31:41 |
| 20. | CIMA: The Enemy | 14,055 | 0.84% | 35 | 7:38:39 |
| 21. | Back to the Future | 13,757 | 0.82% | 8 | 23:56 |
| 22. | Metroid | 13,013 | 0.78% | 2 | 38:32 |
| 23. | God Medicine | 12,996 | 0.78% | 32 | 6:35:57 |
| 24. | Resident Evil Survivor | 11,731 | 0.70% | 20 | 3:32:12 |
| 25. | Mega Man Xtreme | 11,598 | 0.69% | 20 | 3:08:58 |
| 26. | Elevator Action | 11,427 | 0.68% | 11 | 2:02:42 |
| 27. | Gauntlet II | 11,355 | 0.68% | 1 | 1:05:27 |
| 28. | Mega Man Zero 3 | 10,693 | 0.64% | 17 | 3:03:35 |
| 29. | Ninja Gaiden | 10,427 | 0.62% | 9 | 1:26:37 |
| 30. | Mega Man Battle Network 2 | 8,776 | 0.52% | 30 | 10:53:42 |
| 31. | From the Abyss | 8,614 | 0.51% | 18 | 5:07:59 |
| 32. | Street Fighter II | 8,329 | 0.50% | 2 | 31:29 |
| 33. | Summon Night: Swordcraft Story | 8,251 | 0.49% | 26 | 6:38:14 |
| 34. | Teenage Mutant Ninja Turtles | 7,966 | 0.48% | 16 | 7:32:53 |
| 35. | Super Metroid | 7,594 | 0.45% | 29 | 11:29:26 |
| 36. | Mega Man III | 7,400 | 0.44% | 29 | 3:52:22 |
| 37. | RoboCop Versus The Terminator | 7,345 | 0.44% | 1 | 48:46 |
| 38. | Mimana Iyar Chronicle | 7,318 | 0.44% | 31 | 10:07:58 |
| 39. | Secret of Mana | 7,074 | 0.42% | 43 | 8:39:21 |
| 40. | Chrono Trigger | 6,981 | 0.42% | 105 | 1:01:12:37 |
| 41. | Lufia: Curse of the Sinistrals | 6,840 | 0.41% | 42 | 11:35:07 |
| 42. | Mega Man Battle Network 4 | 6,570 | 0.39% | 61 | 14:26:18 |
| 43. | Terminator 2: Judgment Day | 6,474 | 0.39% | 9 | 1:53:17 |
| 44. | Mega Man Battle Network 3 | 6,462 | 0.39% | 44 | 16:11:36 |
| 45. | Castlevania III: Dracula's Curse | 6,401 | 0.38% | 14 | 3:44:14 |
| 46. | Mega Man 5 | 5,977 | 0.36% | 44 | 3:52:16 |
| 47. | Todd McFarlane's Spawn: The Video Game | 5,917 | 0.35% | 9 | 1:06:19 |
| 48. | Phantasy Star IV | 5,912 | 0.35% | 45 | 7:58:10 |
| 49. | The Incredible Hulk | 5,713 | 0.34% | 4 | 25:14 |
| 50. | Shantae and the Pirate's Curse | 5,472 | 0.33% | 25 | 5:03:28 |
| 51. | Contra III: The Alien Wars | 5,411 | 0.32% | 6 | 3:39:28 |
| 52. | Castlevania II: Simon's Quest | 5,399 | 0.32% | 28 | 5:20:04 |
| 53. | Mega Man Maker | 5,381 | 0.32% | 216 | 2:02:04:28 |
| 54. | Cosmo Tank | 5,316 | 0.32% | 10 | 2:10:49 |
| 55. | Breath of Fire II | 5,243 | 0.31% | 67 | 16:19:51 |
| 56. | Shinobi III: Return of the Ninja Master | 5,180 | 0.31% | 7 | 47:09 |
| 57. | Mega Man Xtreme 2 | 5,158 | 0.31% | 22 | 2:16:07 |
| 58. | Nights of Azure | 5,152 | 0.31% | 2 | 25:29 |
| 59. | Castlevania: Dracula X | 5,102 | 0.30% | 13 | 2:50:59 |
| 60. | Castlevania II: Belmont's Revenge | 5,033 | 0.30% | 8 | 2:49:33 |
| 61. | Breath of Fire | 4,932 | 0.29% | 69 | 12:21:35 |
| 62. | Punch-Out!! | 4,898 | 0.29% | 2 | 52:13 |
| 63. | Mega Man 4 | 4,698 | 0.28% | 51 | 4:48:29 |
| 64. | F-Zero: GP Legend | 4,679 | 0.28% | 8 | 2:14:40 |
| 65. | Mega Man II | 4,613 | 0.28% | 6 | 1:18:53 |
| 66. | Teenage Mutant Ninja Turtles II: Back from the Sewers | 4,572 | 0.27% | 6 | 43:50 |
| 67. | Mega Man Battle Network | 4,500 | 0.27% | 12 | 3:14:18 |
| 68. | Metroid: Zero Mission | 4,436 | 0.26% | 20 | 6:38:11 |
| 69. | Princess Edge - Dragonstone | 4,322 | 0.26% | 1 | 13:26 |
| 70. | Streets of Rage 2 | 4,177 | 0.25% | 12 | 3:43:34 |
| 71. | Crisis Core: Final Fantasy VII | 4,126 | 0.25% | 39 | 10:12:05 |
| 72. | Balloon Kid | 4,072 | 0.24% | 11 | 1:45:28 |
| 73. | Castlevania | 4,069 | 0.24% | 12 | 2:34:28 |
| 74. | Space Harrier II | 3,904 | 0.23% | 4 | 1:06:30 |
| 75. | Renegade | 3,771 | 0.22% | 10 | 31:22 |
| 76. | Final Fantasy | 3,688 | 0.22% | 38 | 7:24:18 |
| 77. | BS Zelda no Densetsu | 3,580 | 0.21% | 1 | 2:32:17 |
| 78. | The Legend of Zelda: Link's Awakening | 3,537 | 0.21% | 66 | 17:46:24 |
| 79. | Super Star Wars | 3,527 | 0.21% | 12 | 1:01:22 |
| 80. | Great Greed | 3,504 | 0.21% | 28 | 5:50:33 |
| 81. | Star Ocean: Blue Sphere | 3,410 | 0.20% | 1 | 9:42 |
| 82. | Final Fantasy Legend II | 3,351 | 0.20% | 2 | 9:49 |
| 83. | Teenage Mutant Ninja Turtles: Turtles in Time | 3,216 | 0.19% | 17 | 4:31:21 |
| 84. | Mega Man Battle Chip Challenge | 3,176 | 0.19% | 18 | 5:20:04 |
| 85. | Mega Man ZX | 3,146 | 0.19% | 40 | 8:25:57 |
| 86. | Mission: Impossible | 3,078 | 0.18% | 12 | 3:46:46 |
| 87. | Maui Mallard in Cold Shadow | 3,073 | 0.18% | 19 | 6:45:59 |
| 88. | Teenage Mutant Ninja Turtles III: The Manhattan Project | 3,034 | 0.18% | 5 | 6:47:37 |
| 89. | Aero Fighters | 3,018 | 0.18% | 8 | 46:37 |
| 90. | Doom | 3,010 | 0.18% | 2 | 2:34:38 |
| 91. | Clock Tower | 2,990 | 0.18% | 4 | 2:55:01 |
| 92. | The Legend of Heroes V | 2,980 | 0.18% | 132 | 1:06:23:46 |
| 93. | Mega Man 7 | 2,980 | 0.18% | 31 | 7:14:43 |
| 94. | The Legend of Zelda: Oracle of Ages | 2,933 | 0.17% | 6 | 7:10:44 |
| 95. | Brave Story: New Traveler | 2,912 | 0.17% | 58 | 11:08:31 |
| 96. | Mega Man 6 | 2,901 | 0.17% | 35 | 3:24:37 |
| 97. | Double Dragon | 2,874 | 0.17% | 11 | 1:33:37 |
| 98. | Commando | 2,812 | 0.17% | 1 | 18:43 |
| 99. | The Majors: Pro Baseball | 2,770 | 0.17% | 3 | 2:16:30 |
| 100. | Mighty Morphin Power Rangers | 2,715 | 0.16% | 11 | 1:28:39 |
