| 1. | Super Mario Advance 4: Super Mario Bros. 3 | 2,909,362 | 19.76% | 1 | 2:36:33 |
| 2. | Sonic the Hedgehog 3 | 2,360,550 | 16.03% | 5 | 8:23:18 |
| 3. | Sonic CD | 875,384 | 5.95% | 2 | 2:32:11 |
| 4. | The Legend of Zelda: Link's Awakening | 778,494 | 5.29% | 3 | 9:41:43 |
| 5. | Sonic the Hedgehog 2 | 580,718 | 3.94% | 13 | 19:25:20 |
| 6. | Super Mario Kart | 394,324 | 2.68% | 5 | 5:55:45 |
| 7. | Sonic the Hedgehog | 371,073 | 2.52% | 10 | 9:08:42 |
| 8. | Super Mario Land 2: 6 Golden Coins | 364,331 | 2.47% | 2 | 2:29:16 |
| 9. | The Legend of Zelda: A Link to the Past | 340,352 | 2.31% | 3 | 10:11:23 |
| 10. | Super Mario 64 | 303,739 | 2.06% | 4 | 11:38:00 |
| 11. | Super Mario Advance | 285,031 | 1.94% | 1 | 1:22:06 |
| 12. | Zelda II: The Adventure of Link | 274,982 | 1.87% | 1 | 2:40:50 |
| 13. | The Legend of Zelda | 243,875 | 1.66% | 3 | 5:07:40 |
| 14. | Kirby's Adventure | 183,824 | 1.25% | 2 | 4:02:40 |
| 15. | Super Mario World | 147,592 | 1.00% | 3 | 4:29:45 |
| 16. | Sonic & Knuckles | 126,184 | 0.86% | 2 | 2:21:55 |
| 17. | Final Fantasy VI | 124,470 | 0.85% | 60 | 1:12:11:49 |
| 18. | Star Fox 64 | 122,956 | 0.84% | 1 | 57:48 |
| 19. | Super Mario Bros. | 110,459 | 0.75% | 5 | 1:27:21 |
| 20. | Super Mario Bros. Deluxe | 102,889 | 0.70% | 1 | 1:09:27 |
| 21. | The Legend of Zelda: The Minish Cap | 102,618 | 0.70% | 1 | 9:22:25 |
| 22. | Super Castlevania IV | 100,423 | 0.68% | 1 | 1:24:07 |
| 23. | Splatterhouse 3 | 86,317 | 0.59% | 1 | 59:52 |
| 24. | Super Mario Bros. 3 | 70,112 | 0.48% | 4 | 7:48:07 |
| 25. | Super Mario Bros. 2 | 37,552 | 0.26% | 1 | 1:03:05 |
| 26. | Sonic Jam | 34,486 | 0.23% | 3 | 3:14:19 |
| 27. | Somari | 32,267 | 0.22% | 1 | 49:09 |
| 28. | Super Mario World: Super Mario Advance 2 | 31,818 | 0.22% | 1 | 2:09:48 |
| 29. | Bomberman GB | 26,652 | 0.18% | 1 | 1:54:42 |
| 30. | Donkey Kong Country | 26,297 | 0.18% | 3 | 4:33:23 |
| 31. | Sonic the Hedgehog Pocket Adventure | 23,146 | 0.16% | 1 | 48:56 |
| 32. | Castlevania | 22,901 | 0.16% | 5 | 2:33:55 |
| 33. | Mega Man X | 20,575 | 0.14% | 3 | 4:49:04 |
| 34. | Chrono Trigger | 19,382 | 0.13% | 40 | 1:04:05:41 |
| 35. | Castlevania: Dracula X | 17,429 | 0.12% | 1 | 49:30 |
| 36. | Castlevania II: Simon's Quest | 17,149 | 0.12% | 1 | 1:38:57 |
| 37. | F-Zero | 15,001 | 0.10% | 2 | 1:38:35 |
| 38. | Star Fox | 14,107 | 0.10% | 1 | 46:48 |
| 39. | Mario Bros. | 11,393 | 0.08% | 3 | 3:38:17 |
| 40. | Mario Kart 64 | 11,237 | 0.08% | 2 | 1:55:59 |
| 41. | Super Ghouls 'n Ghosts | 10,847 | 0.07% | 1 | 1:10:47 |
| 42. | Golden Axe | 10,031 | 0.07% | 1 | 32:08 |
| 43. | Ghouls 'n Ghosts | 9,202 | 0.06% | 2 | 1:48:02 |
| 44. | Final Fantasy | 8,773 | 0.06% | 24 | 11:23:21 |
| 45. | Metroid | 8,425 | 0.06% | 1 | 1:04:20 |
| 46. | The Pirates Of Dark Water | 8,334 | 0.06% | 1 | 1:53:57 |
| 47. | Mega Man Zero | 7,711 | 0.05% | 1 | 1:00:20 |
| 48. | Men in Black: The Series | 7,213 | 0.05% | 1 | 20:08 |
| 49. | Pilotwings | 7,059 | 0.05% | 1 | 54:50 |
| 50. | Bravoman | 6,001 | 0.04% | 1 | 56:04 |
| 51. | Ghosts 'n Goblins | 5,970 | 0.04% | 1 | 32:53 |
| 52. | Mega Man | 5,806 | 0.04% | 3 | 2:03:25 |
| 53. | Alex Kidd in Miracle World | 5,676 | 0.04% | 2 | 1:27:51 |
| 54. | Kirby's Dream Land | 5,385 | 0.04% | 2 | 45:23 |
| 55. | Teenage Mutant Ninja Turtles | 4,826 | 0.03% | 3 | 4:03:06 |
| 56. | Final Fantasy Adventure | 4,578 | 0.03% | 1 | 5:16:46 |
| 57. | Battletoads/Double Dragon | 4,554 | 0.03% | 2 | 1:35:55 |
| 58. | Teenage Mutant Ninja Turtles II: Back from the Sewers | 4,463 | 0.03% | 1 | 45:10 |
| 59. | Super Mario All-Stars | 4,205 | 0.03% | 1 | 57:03 |
| 60. | Final Fantasy VIII | 4,118 | 0.03% | 27 | 22:55:35 |
| 61. | The Legendary Axe II | 3,945 | 0.03% | 1 | 29:59 |
| 62. | Super Mario Land | 3,937 | 0.03% | 1 | 26:12 |
| 63. | Harmful Park | 3,639 | 0.02% | 1 | 47:36 |
| 64. | The Legend of Zelda: Link's Awakening | 3,575 | 0.02% | 16 | 9:48:14 |
| 65. | Secret of Mana | 3,506 | 0.02% | 34 | 17:27:52 |
| 66. | Sonic Chaos | 3,436 | 0.02% | 1 | 33:24 |
| 67. | Raiden | 3,288 | 0.02% | 1 | 28:02 |
| 68. | Shockman | 3,123 | 0.02% | 1 | 38:41 |
| 69. | Teenage Mutant Ninja Turtles III: The Manhattan Project | 3,033 | 0.02% | 1 | 1:25:36 |
| 70. | Tiny Toon Adventures | 3,010 | 0.02% | 1 | 32:35 |
| 71. | Mega Man 2 | 2,923 | 0.02% | 1 | 57:19 |
| 72. | Sonic Advance | 2,880 | 0.02% | 1 | 57:01 |
| 73. | Dragon Crystal | 2,765 | 0.02% | 1 | 1:53:53 |
| 74. | Cyber Core | 2,756 | 0.02% | 1 | 30:40 |
| 75. | Final Fantasy VII | 2,609 | 0.02% | 12 | 1:19:55:55 |
| 76. | Shadowkeep | 2,447 | 0.02% | 1 | 24:45 |
| 77. | Paper Mario | 2,440 | 0.02% | 3 | 4:11:53 |
| 78. | Lunar: The Silver Star | 2,363 | 0.02% | 23 | 13:48:58 |
| 79. | OutRun 2019 | 2,345 | 0.02% | 1 | 24:13 |
| 80. | Streets of Rage 2 | 2,261 | 0.02% | 1 | 1:09:46 |
| 81. | Elemental Master | 2,228 | 0.02% | 1 | 32:29 |
| 82. | TaskMaker | 2,211 | 0.02% | 6 | 8:47:50 |
| 83. | Castlevania Chronicles | 2,105 | 0.01% | 1 | 56:09 |
| 84. | Bomb Jack | 2,029 | 0.01% | 1 | 20:41 |
| 85. | All Night Nippon Super Mario Bros. | 2,003 | 0.01% | 1 | 28:14 |
| 86. | Nintendo World Championships 1990 | 1,907 | 0.01% | 1 | 9:23 |
| 87. | Gate of Thunder | 1,862 | 0.01% | 1 | 34:29 |
| 88. | Castlevania: Symphony of the Night | 1,820 | 0.01% | 2 | 2:49:12 |
| 89. | Battletoads | 1,816 | 0.01% | 4 | 5:46:07 |
| 90. | Sonic Labyrinth | 1,791 | 0.01% | 1 | 30:45 |
| 91. | *N Sync: Get to the Show | 1,681 | 0.01% | 1 | 19:46 |
| 92. | DuckTales | 1,658 | 0.01% | 1 | 33:13 |
| 93. | Lunar: Eternal Blue | 1,640 | 0.01% | 11 | 8:17:21 |
| 94. | Sonic Drift | 1,575 | 0.01% | 1 | 25:32 |
| 95. | Altered Beast | 1,531 | 0.01% | 1 | 13:24 |
| 96. | Neverwinter Nights | 1,519 | 0.01% | 1 | 1:54:07 |
| 97. | Sinistron | 1,511 | 0.01% | 1 | 18:44 |
| 98. | Dead Moon | 1,488 | 0.01% | 1 | 26:08 |
| 99. | Galaga '88 | 1,420 | 0.01% | 1 | 20:31 |
| 100. | Remote Control | 1,411 | 0.01% | 1 | 20:01 |
