| 1. | Super Mario Advance 4: Super Mario Bros. 3 | 2,914,538 | 19.78% | 2 | 3:44:43 |
| 2. | Sonic & Knuckles | 2,539,446 | 17.23% | 3 | 3:51:26 |
| 3. | Sonic the Hedgehog 3 | 2,378,839 | 16.14% | 6 | 9:39:56 |
| 4. | Sonic CD | 875,384 | 5.94% | 2 | 2:32:11 |
| 5. | The Legend of Zelda: Link's Awakening | 778,494 | 5.28% | 3 | 9:41:43 |
| 6. | Sonic the Hedgehog 2 | 774,558 | 5.26% | 14 | 20:45:17 |
| 7. | Sonic the Hedgehog | 468,841 | 3.18% | 14 | 11:16:29 |
| 8. | Super Mario Kart | 394,324 | 2.68% | 5 | 5:55:45 |
| 9. | Super Mario Land 2: 6 Golden Coins | 364,331 | 2.47% | 2 | 2:29:16 |
| 10. | The Legend of Zelda: A Link to the Past | 340,352 | 2.31% | 3 | 10:11:23 |
| 11. | Super Mario 64 | 304,665 | 2.07% | 5 | 16:30:10 |
| 12. | Super Mario Advance | 285,031 | 1.93% | 1 | 1:22:06 |
| 13. | Zelda II: The Adventure of Link | 274,982 | 1.87% | 1 | 2:40:50 |
| 14. | The Legend of Zelda | 243,875 | 1.65% | 3 | 5:07:40 |
| 15. | Kirby's Adventure | 184,022 | 1.25% | 2 | 4:02:40 |
| 16. | Super Mario World | 147,592 | 1.00% | 3 | 4:29:45 |
| 17. | Final Fantasy VI | 124,772 | 0.85% | 61 | 1:12:18:32 |
| 18. | Star Fox 64 | 122,956 | 0.83% | 1 | 57:48 |
| 19. | Super Mario Bros. | 110,459 | 0.75% | 5 | 1:27:21 |
| 20. | Super Mario Bros. Deluxe | 102,889 | 0.70% | 1 | 1:09:27 |
| 21. | The Legend of Zelda: The Minish Cap | 102,618 | 0.70% | 1 | 9:22:25 |
| 22. | Super Castlevania IV | 100,423 | 0.68% | 1 | 1:24:07 |
| 23. | Super Mario Bros. 3 | 64,936 | 0.44% | 3 | 6:39:57 |
| 24. | Super Mario Bros. 2 | 37,552 | 0.25% | 1 | 1:03:05 |
| 25. | Sonic Spinball | 33,329 | 0.23% | 1 | 49:32 |
| 26. | Somari | 32,267 | 0.22% | 1 | 49:09 |
| 27. | Super Mario World: Super Mario Advance 2 | 31,818 | 0.22% | 1 | 2:09:48 |
| 28. | Bomberman GB | 27,110 | 0.18% | 2 | 1:54:42 |
| 29. | Donkey Kong Country | 26,297 | 0.18% | 3 | 4:33:23 |
| 30. | Castlevania | 23,174 | 0.16% | 5 | 2:33:55 |
| 31. | Sonic the Hedgehog Pocket Adventure | 23,146 | 0.16% | 1 | 48:56 |
| 32. | Mega Man X | 20,575 | 0.14% | 3 | 4:49:04 |
| 33. | Chrono Trigger | 19,382 | 0.13% | 40 | 1:04:05:41 |
| 34. | Castlevania: Dracula X | 17,429 | 0.12% | 1 | 49:30 |
| 35. | Castlevania II: Simon's Quest | 17,149 | 0.12% | 1 | 1:38:57 |
| 36. | Sonic Jam | 16,926 | 0.11% | 2 | 1:57:41 |
| 37. | F-Zero | 15,001 | 0.10% | 2 | 1:38:35 |
| 38. | Neutopia | 14,905 | 0.10% | 1 | 2:07:01 |
| 39. | Star Fox | 14,107 | 0.10% | 1 | 46:48 |
| 40. | Mario Bros. | 11,393 | 0.08% | 3 | 3:38:17 |
| 41. | Mario Kart 64 | 11,237 | 0.08% | 2 | 1:55:59 |
| 42. | Dungeon Explorer | 11,223 | 0.08% | 1 | 54:31 |
| 43. | Super Ghouls 'n Ghosts | 10,847 | 0.07% | 1 | 1:10:47 |
| 44. | Golden Axe | 10,031 | 0.07% | 1 | 32:08 |
| 45. | Final Fantasy | 8,964 | 0.06% | 25 | 13:07:30 |
| 46. | Metroid | 8,425 | 0.06% | 1 | 1:04:20 |
| 47. | The Pirates Of Dark Water | 8,334 | 0.06% | 1 | 1:53:57 |
| 48. | Mega Man Zero | 7,711 | 0.05% | 1 | 1:00:20 |
| 49. | Men in Black: The Series | 7,213 | 0.05% | 1 | 20:08 |
| 50. | Pilotwings | 7,059 | 0.05% | 1 | 54:50 |
| 51. | Mega Man | 6,362 | 0.04% | 4 | 2:33:31 |
| 52. | Bravoman | 6,001 | 0.04% | 1 | 56:04 |
| 53. | Ghosts 'n Goblins | 5,970 | 0.04% | 1 | 32:53 |
| 54. | Alex Kidd in Miracle World | 5,676 | 0.04% | 2 | 1:27:51 |
| 55. | Kirby's Dream Land | 5,385 | 0.04% | 2 | 45:23 |
| 56. | Teenage Mutant Ninja Turtles | 4,705 | 0.03% | 3 | 2:47:55 |
| 57. | Final Fantasy Adventure | 4,578 | 0.03% | 1 | 5:16:46 |
| 58. | Battletoads/Double Dragon | 4,554 | 0.03% | 2 | 1:35:55 |
| 59. | Teenage Mutant Ninja Turtles II: Back from the Sewers | 4,463 | 0.03% | 1 | 45:10 |
| 60. | Super Mario All-Stars | 4,205 | 0.03% | 1 | 57:03 |
| 61. | Final Fantasy VIII | 4,118 | 0.03% | 27 | 22:55:35 |
| 62. | The Legendary Axe II | 3,945 | 0.03% | 1 | 29:59 |
| 63. | Super Mario Land | 3,937 | 0.03% | 1 | 26:12 |
| 64. | Harmful Park | 3,639 | 0.02% | 1 | 47:36 |
| 65. | The Legend of Zelda: Link's Awakening | 3,575 | 0.02% | 16 | 9:48:14 |
| 66. | Secret of Mana | 3,506 | 0.02% | 34 | 17:27:52 |
| 67. | Raiden | 3,477 | 0.02% | 2 | 58:05 |
| 68. | Sonic Chaos | 3,436 | 0.02% | 1 | 33:24 |
| 69. | Shockman | 3,123 | 0.02% | 1 | 38:41 |
| 70. | Final Fantasy VII | 3,110 | 0.02% | 16 | 1:12:30:29 |
| 71. | Teenage Mutant Ninja Turtles III: The Manhattan Project | 3,033 | 0.02% | 1 | 1:25:36 |
| 72. | Tiny Toon Adventures | 3,010 | 0.02% | 1 | 32:35 |
| 73. | Mega Man 2 | 2,923 | 0.02% | 1 | 57:19 |
| 74. | Final Fantasy IV | 2,895 | 0.02% | 2 | 8:41 |
| 75. | Sonic Advance | 2,880 | 0.02% | 1 | 57:01 |
| 76. | Dragon Crystal | 2,765 | 0.02% | 1 | 1:53:53 |
| 77. | Cyber Core | 2,756 | 0.02% | 1 | 30:40 |
| 78. | TaskMaker | 2,477 | 0.02% | 9 | 6:58:31 |
| 79. | Shadowkeep | 2,447 | 0.02% | 1 | 24:45 |
| 80. | Paper Mario | 2,440 | 0.02% | 3 | 4:11:53 |
| 81. | Lunar: The Silver Star | 2,363 | 0.02% | 23 | 13:48:58 |
| 82. | OutRun 2019 | 2,345 | 0.02% | 1 | 24:13 |
| 83. | Streets of Rage 2 | 2,261 | 0.02% | 1 | 1:09:46 |
| 84. | Castlevania: Symphony of the Night | 2,226 | 0.02% | 5 | 2:49:12 |
| 85. | Lunar: Eternal Blue | 2,135 | 0.01% | 15 | 9:50:17 |
| 86. | Castlevania Chronicles | 2,105 | 0.01% | 1 | 56:09 |
| 87. | Bomb Jack | 2,029 | 0.01% | 1 | 20:41 |
| 88. | All Night Nippon Super Mario Bros. | 2,003 | 0.01% | 1 | 28:14 |
| 89. | Nintendo World Championships 1990 | 1,907 | 0.01% | 1 | 9:23 |
| 90. | Gate of Thunder | 1,862 | 0.01% | 1 | 34:29 |
| 91. | Battletoads | 1,816 | 0.01% | 4 | 5:46:07 |
| 92. | Sonic Labyrinth | 1,791 | 0.01% | 1 | 30:45 |
| 93. | *N Sync: Get to the Show | 1,681 | 0.01% | 1 | 19:46 |
| 94. | DuckTales | 1,658 | 0.01% | 1 | 33:13 |
| 95. | Final Fantasy VII Remake | 1,593 | 0.01% | 14 | 2:00:02:00 |
| 96. | Sonic Drift | 1,575 | 0.01% | 1 | 25:32 |
| 97. | Altered Beast | 1,531 | 0.01% | 1 | 13:24 |
| 98. | Neverwinter Nights | 1,519 | 0.01% | 1 | 1:54:07 |
| 99. | Sinistron | 1,511 | 0.01% | 1 | 18:44 |
| 100. | Dead Moon | 1,488 | 0.01% | 1 | 26:08 |
