| 1. | Final Fantasy VI | 380,888 | 7.13% | 599 | 9:22:34:29 |
| 2. | Suikoden: Tierkreis | 358,448 | 6.71% | 140 | 1:19:36:16 |
| 3. | Final Fantasy IV: The After Years | 338,760 | 6.34% | 235 | 3:13:37:09 |
| 4. | Suikoden II | 303,960 | 5.69% | 195 | 2:19:18:29 |
| 5. | Super Mario RPG | 286,903 | 5.37% | 284 | 4:04:35:24 |
| 6. | Lufia II: Rise of the Sinistrals | 206,216 | 3.86% | 184 | 2:06:45:54 |
| 7. | Xenogears | 138,788 | 2.60% | 143 | 2:06:34:30 |
| 8. | Mario Kart 64 | 91,705 | 1.72% | 16 | 5:28:33 |
| 9. | Lufia: The Legend Returns | 89,748 | 1.68% | 101 | 1:13:01:19 |
| 10. | Super Mario Bros. 3 | 88,826 | 1.66% | 100 | 1:11:00:02 |
| 11. | Star Ocean: The Second Story | 88,756 | 1.66% | 111 | 1:17:58:57 |
| 12. | Super Mario World 2: Yoshi's Island | 87,070 | 1.63% | 89 | 21:32:16 |
| 13. | Final Fantasy | 71,966 | 1.35% | 170 | 2:15:59:15 |
| 14. | Mother 3 | 70,599 | 1.32% | 90 | 1:04:46:16 |
| 15. | Castlevania: Symphony of the Night | 67,312 | 1.26% | 78 | 1:07:29:52 |
| 16. | Earthbound | 64,910 | 1.22% | 86 | 1:05:57:09 |
| 17. | Final Fantasy IX | 64,769 | 1.21% | 129 | 1:23:11:39 |
| 18. | Broken Sword: The Shadow of the Templars | 62,694 | 1.17% | 28 | 9:16:07 |
| 19. | Shining Force | 53,209 | 1.00% | 54 | 20:08:07 |
| 20. | Castlevania II: Simon's Quest | 51,579 | 0.97% | 19 | 5:07:19 |
| 21. | The Legend of Zelda: A Link to the Past | 46,048 | 0.86% | 33 | 12:22:32 |
| 22. | The Legend of Zelda: Link's Awakening | 45,379 | 0.85% | 19 | 6:06:43 |
| 23. | Super Mario World | 44,389 | 0.83% | 137 | 1:22:09:07 |
| 24. | Breath of Fire | 42,967 | 0.80% | 59 | 19:23:50 |
| 25. | Star Ocean | 42,228 | 0.79% | 30 | 5:26:33 |
| 26. | Suikoden III | 41,236 | 0.77% | 136 | 2:08:13:12 |
| 27. | Mario Kart: Super Circuit | 37,227 | 0.70% | 6 | 1:02:42 |
| 28. | The Legend of Zelda: Oracle of Ages | 34,444 | 0.64% | 32 | 10:59:04 |
| 29. | Suikoden V | 34,120 | 0.64% | 146 | 2:18:43:00 |
| 30. | Zombies Ate My Neighbors | 33,843 | 0.63% | 12 | 3:00:36 |
| 31. | Final Fantasy VII | 31,613 | 0.59% | 184 | 3:10:16:01 |
| 32. | Secret of Mana | 31,039 | 0.58% | 81 | 1:09:54:20 |
| 33. | Super Mario Bros. | 29,505 | 0.55% | 49 | 15:32:30 |
| 34. | Genso Suikogaiden Vol. 1: Swordsman of Harmonia | 29,272 | 0.55% | 17 | 5:17:34 |
| 35. | Battletoads | 28,510 | 0.53% | 10 | 2:34:31 |
| 36. | Wild Arms 3 | 28,148 | 0.53% | 160 | 3:03:23:28 |
| 37. | Final Fantasy IV | 27,333 | 0.51% | 8 | 2:10:23 |
| 38. | Shining Force II | 27,292 | 0.51% | 73 | 1:03:51:43 |
| 39. | Lufia & the Fortress of Doom | 24,621 | 0.46% | 47 | 14:54:14 |
| 40. | Wild Arms | 23,982 | 0.45% | 90 | 1:08:05:50 |
| 41. | ActRaiser 2 | 22,580 | 0.42% | 11 | 1:59:24 |
| 42. | Castlevania: Harmony of Dissonance | 22,415 | 0.42% | 34 | 11:27:34 |
| 43. | Suikoden IV | 22,247 | 0.42% | 62 | 1:05:21:28 |
| 44. | Tales of Phantasia | 21,783 | 0.41% | 120 | 2:09:47:14 |
| 45. | Wild Arms 2 | 21,302 | 0.40% | 122 | 2:02:11:21 |
| 46. | ClayFighter | 20,139 | 0.38% | 3 | 24:38 |
| 47. | Lagoon | 19,958 | 0.37% | 33 | 11:20:40 |
| 48. | Contra: Hard Corps | 19,480 | 0.36% | 12 | 3:20:47 |
| 49. | Duck Hunt | 18,719 | 0.35% | 3 | 30:33 |
| 50. | Justice League Task Force | 18,655 | 0.35% | 6 | 1:29:52 |
| 51. | The Legend of Zelda: Parallel Worlds | 18,414 | 0.34% | 30 | 9:32:13 |
| 52. | Castlevania: Dawn of Sorrow | 18,146 | 0.34% | 35 | 14:00:12 |
| 53. | Grandia II | 17,865 | 0.33% | 52 | 22:48:02 |
| 54. | ActRaiser | 17,518 | 0.33% | 19 | 3:25:46 |
| 55. | E.V.O.: Search for Eden | 17,173 | 0.32% | 13 | 3:46:46 |
| 56. | Castlevania: Bloodlines | 17,140 | 0.32% | 6 | 1:25:47 |
| 57. | Mario Bros. | 17,079 | 0.32% | 14 | 4:40:14 |
| 58. | Polar Bowler | 16,490 | 0.31% | 1 | 31:53 |
| 59. | The Legend of Zelda | 15,929 | 0.30% | 22 | 3:50:03 |
| 60. | The Final Fantasy Legend | 15,927 | 0.30% | 92 | 1:13:25:35 |
| 61. | Wild Arms Alter Code: F | 15,581 | 0.29% | 155 | 3:05:53:43 |
| 62. | Chronicles of a Dark Lord: Episode I Tides of Fate | 15,545 | 0.29% | 50 | 16:15:10 |
| 63. | Aero the Acro-Bat | 15,530 | 0.29% | 13 | 2:19:17 |
| 64. | Castlevania: Circle of the Moon | 15,098 | 0.28% | 36 | 11:00:30 |
| 65. | Castlevania: Portrait of Ruin | 14,352 | 0.27% | 37 | 13:21:50 |
| 66. | Shadow Madness | 12,555 | 0.24% | 84 | 1:14:28:20 |
| 67. | Zelda II: The Adventure of Link | 11,289 | 0.21% | 16 | 2:57:33 |
| 68. | Mario Paint | 11,153 | 0.21% | 2 | 21:41 |
| 69. | RPG Maker 2003 | 10,437 | 0.20% | 11 | 4:30:06 |
| 70. | Dragon Quest XI | 10,227 | 0.19% | 314 | 8:11:54:34 |
| 71. | Grandia II Anniversary Edition | 10,202 | 0.19% | 34 | 16:18:34 |
| 72. | Chrono Trigger | 9,718 | 0.18% | 64 | 1:02:21:56 |
| 73. | Final Fantasy X | 9,319 | 0.17% | 117 | 2:11:43:55 |
| 74. | Super Mario Bros.: The Lost Levels | 9,005 | 0.17% | 3 | 1:54:27 |
| 75. | Wild Arms 4 | 8,868 | 0.17% | 85 | 1:21:58:31 |
| 76. | A Boy and His Blob: Trouble on Blobolonia | 8,658 | 0.16% | 2 | 27:28 |
| 77. | Wild Arms 5 | 8,595 | 0.16% | 139 | 3:07:40:57 |
| 78. | Super Mario Kart | 7,756 | 0.15% | 10 | 2:07:39 |
| 79. | Castlevania: Order of Ecclesia | 7,474 | 0.14% | 32 | 10:12:45 |
| 80. | Castlevania III: Dracula's Curse | 7,142 | 0.13% | 8 | 2:03:59 |
| 81. | Sonic the Hedgehog 2 | 7,079 | 0.13% | 12 | 2:26:12 |
| 82. | Mega Man: The Wily Wars | 7,034 | 0.13% | 18 | 5:05:10 |
| 83. | Breath of Fire II | 7,031 | 0.13% | 58 | 22:35:15 |
| 84. | Beyond the Beyond | 6,940 | 0.13% | 52 | 1:00:32:05 |
| 85. | Castlevania: Aria of Sorrow | 6,762 | 0.13% | 25 | 8:22:06 |
| 86. | Ms. Pac-Man | 6,685 | 0.13% | 2 | 20:45 |
| 87. | Soul Blazer | 6,590 | 0.12% | 29 | 5:12:45 |
| 88. | Castlevania: Dracula X | 6,494 | 0.12% | 5 | 51:14 |
| 89. | Suikoden Tactics | 6,132 | 0.11% | 56 | 1:06:55:35 |
| 90. | ANOTHER EDEN | 6,085 | 0.11% | 192 | 4:09:05:14 |
| 91. | The Legend of Zelda: Link's Awakening | 6,034 | 0.11% | 3 | 58:36 |
| 92. | Super Mario Bros. Crossover | 5,944 | 0.11% | 10 | 3:06:01 |
| 93. | Terranigma | 5,673 | 0.11% | 52 | 20:05:12 |
| 94. | Star Fox | 5,532 | 0.10% | 11 | 2:48:39 |
| 95. | Battle Arena Toshinden | 5,185 | 0.10% | 4 | 55:15 |
| 96. | Castlevania: The Lecarde Chronicles 2 | 5,111 | 0.10% | 33 | 11:43:10 |
| 97. | Phantasy Star IV | 5,109 | 0.10% | 47 | 18:59:36 |
| 98. | After Dark Games | 5,032 | 0.09% | 2 | 17:52 |
| 99. | Tales of Arise | 4,999 | 0.09% | 190 | 4:14:14:01 |
| 100. | Saturday Night Slam Masters | 4,729 | 0.09% | 4 | 43:22 |
