| 1. | Contra | 3,390 | 4.73% | 3 | 44:20 |
| 2. | Killer Instinct | 2,703 | 3.77% | 1 | 19:00 |
| 3. | Sonic Adventure 2 | 1,998 | 2.79% | 16 | 3:36:15 |
| 4. | Resident Evil Zero | 1,440 | 2.01% | 7 | 7:48:39 |
| 5. | Excitebike 64 | 1,237 | 1.73% | 2 | 57:14 |
| 6. | The Legend of Zelda: Breath of the Wild | 1,129 | 1.58% | 2 | 1:01:43 |
| 7. | Super Mario World 2: Yoshi's Island | 957 | 1.34% | 11 | 5:53:09 |
| 8. | Super Mario Land 2: 6 Golden Coins | 957 | 1.34% | 7 | 1:41:27 |
| 9. | Sonic Colors | 867 | 1.21% | 7 | 4:35:51 |
| 10. | In the Hunt | 824 | 1.15% | 6 | 1:23:40 |
| 11. | Sonic the Hedgehog | 785 | 1.10% | 11 | 6:25:53 |
| 12. | Final Fantasy VI | 674 | 0.94% | 13 | 12:09:10 |
| 13. | Dr. Mario | 611 | 0.85% | 2 | 1:01:54 |
| 14. | Baten Kaitos: Eternal Wings and the Lost Ocean | 606 | 0.85% | 1 | 19:36 |
| 15. | Sin and Punishment | 594 | 0.83% | 4 | 1:48:10 |
| 16. | Mario Kart: Super Circuit | 584 | 0.82% | 5 | 1:18:15 |
| 17. | The Legend of Zelda: The Wind Waker | 559 | 0.78% | 2 | 50:24 |
| 18. | Super Mario Strikers | 534 | 0.75% | 4 | 3:39:55 |
| 19. | Vice: Project Doom | 502 | 0.70% | 1 | 12:09 |
| 20. | Valis III | 498 | 0.70% | 1 | 14:09 |
| 21. | Super Contra | 460 | 0.64% | 1 | 16:41 |
| 22. | P.N.03 | 437 | 0.61% | 6 | 4:31:46 |
| 23. | Sonic the Hedgehog 3 | 426 | 0.59% | 13 | 4:57:15 |
| 24. | Kirby's Dream Land 2 | 423 | 0.59% | 7 | 2:13:16 |
| 25. | Vectorman | 403 | 0.56% | 1 | 12:35 |
| 26. | Castlevania Legends | 403 | 0.56% | 1 | 14:26 |
| 27. | Disney's Aladdin | 402 | 0.56% | 1 | 46:49 |
| 28. | Sonic the Hedgehog 2 | 382 | 0.53% | 10 | 3:19:27 |
| 29. | Mega Man | 379 | 0.53% | 1 | 23:35 |
| 30. | Super Mario World: Super Mario Advance 2 | 375 | 0.52% | 4 | 1:23:29 |
| 31. | Mario Tennis | 367 | 0.51% | 3 | 1:09:21 |
| 32. | Castlevania III: Dracula's Curse | 367 | 0.51% | 1 | 14:24 |
| 33. | Super Ghouls 'n Ghosts | 366 | 0.51% | 1 | 41:16 |
| 34. | Tuff E Nuff | 365 | 0.51% | 1 | 23:46 |
| 35. | Castlevania II: Belmont's Revenge | 357 | 0.50% | 1 | 22:48 |
| 36. | Operation C | 353 | 0.49% | 1 | 13:35 |
| 37. | Resident Evil 3 | 339 | 0.47% | 2 | 54:41 |
| 38. | Shadow of the Ninja | 331 | 0.46% | 1 | 16:36 |
| 39. | Chrono Trigger | 331 | 0.46% | 2 | 2:53:06 |
| 40. | Final Fantasy Crystal Chronicles | 319 | 0.45% | 3 | 2:05:42 |
| 41. | Sonic Adventure | 318 | 0.44% | 9 | 2:42:36 |
| 42. | Grandia | 313 | 0.44% | 1 | 52:12 |
| 43. | Prehistorik Man | 277 | 0.39% | 1 | 17:33 |
| 44. | Super Metroid | 275 | 0.38% | 2 | 49:56 |
| 45. | Devil May Cry | 272 | 0.38% | 4 | 4:23:51 |
| 46. | Alien Storm | 265 | 0.37% | 2 | 44:42 |
| 47. | Sonic Jam | 262 | 0.37% | 1 | 1:03:39 |
| 48. | The Legend of Zelda | 257 | 0.36% | 5 | 2:27:56 |
| 49. | Demon's Crest | 249 | 0.35% | 1 | 20:39 |
| 50. | Kirby's Return to Dream Land | 245 | 0.34% | 2 | 51:34 |
| 51. | Tales of Symphonia | 237 | 0.33% | 2 | 1:35:43 |
| 52. | Super Castlevania IV | 234 | 0.33% | 1 | 20:04 |
| 53. | Out Run | 230 | 0.32% | 1 | 21:23 |
| 54. | Deep Fear | 228 | 0.32% | 2 | 59:28 |
| 55. | Bonanza Bros. | 227 | 0.32% | 1 | 11:13 |
| 56. | Mega Turrican | 224 | 0.31% | 2 | 25:43 |
| 57. | Final Fantasy IX | 224 | 0.31% | 1 | 59:14 |
| 58. | Super Turrican 2 | 223 | 0.31% | 1 | 13:52 |
| 59. | The Legend of Zelda: Four Swords Adventures | 223 | 0.31% | 4 | 6:24:32 |
| 60. | Jet Force Gemini | 221 | 0.31% | 1 | 26:54 |
| 61. | Castlevania: The Adventure | 219 | 0.31% | 1 | 15:25 |
| 62. | Xenoblade Chronicles | 217 | 0.30% | 2 | 46:30 |
| 63. | Warbirds | 216 | 0.30% | 1 | 14:32 |
| 64. | Victory Run | 216 | 0.30% | 1 | 13:56 |
| 65. | Teenage Mutant Ninja Turtles | 209 | 0.29% | 1 | 13:05 |
| 66. | Doom | 208 | 0.29% | 3 | 50:23 |
| 67. | Saint Dragon | 206 | 0.29% | 1 | 11:42 |
| 68. | Mortal Kombat | 203 | 0.28% | 1 | 11:09 |
| 69. | QuackShot | 200 | 0.28% | 3 | 1:02:12 |
| 70. | Fire Emblem: Path of Radiance | 196 | 0.27% | 1 | 19:54 |
| 71. | F-Zero GX | 193 | 0.27% | 3 | 1:10:43 |
| 72. | Final Fantasy Adventure | 193 | 0.27% | 1 | 34:43 |
| 73. | Turrican II: The Final Fight | 192 | 0.27% | 1 | 14:05 |
| 74. | Ghosts 'n Goblins | 191 | 0.27% | 1 | 16:13 |
| 75. | The Legend of Zelda: Twilight Princess | 190 | 0.27% | 2 | 1:10:57 |
| 76. | Alisia Dragoon | 188 | 0.26% | 1 | 13:29 |
| 77. | Star Fox 64 | 188 | 0.26% | 4 | 1:26:15 |
| 78. | Sonic the Hedgehog | 188 | 0.26% | 3 | 3:09:17 |
| 79. | Space Harrier II | 187 | 0.26% | 1 | 15:39 |
| 80. | The Legend of Zelda: Oracle of Ages | 187 | 0.26% | 2 | 58:49 |
| 81. | Metal Gear Solid 3: Snake Eater | 186 | 0.26% | 1 | 37:33 |
| 82. | Sonic CD | 186 | 0.26% | 6 | 1:30:53 |
| 83. | Shadow of the Colossus | 182 | 0.25% | 1 | 25:49 |
| 84. | Silpheed | 179 | 0.25% | 1 | 15:47 |
| 85. | OutRun 2 | 175 | 0.24% | 1 | 23:28 |
| 86. | Super Mario Bros. 3 | 175 | 0.24% | 2 | 40:26 |
| 87. | Metroid II: Return of Samus | 171 | 0.24% | 1 | 25:29 |
| 88. | Snow Bros. | 167 | 0.23% | 1 | 27:38 |
| 89. | Bad Dudes | 165 | 0.23% | 1 | 26:00 |
| 90. | Super Mario World | 165 | 0.23% | 2 | 50:45 |
| 91. | 64th Street: A Detective Story | 163 | 0.23% | 1 | 47:44 |
| 92. | Wario Land: Super Mario Land 3 | 163 | 0.23% | 4 | 4:34:20 |
| 93. | Eliminator Boat Duel | 159 | 0.22% | 1 | 22:54 |
| 94. | Street Fighter II | 152 | 0.21% | 2 | 40:09 |
| 95. | Yoshi | 151 | 0.21% | 1 | 21:15 |
| 96. | Kirby & the Amazing Mirror | 151 | 0.21% | 1 | 21:57 |
| 97. | Klonoa 2: Lunatea's Veil | 150 | 0.21% | 3 | 8:31:19 |
| 98. | WinBack | 148 | 0.21% | 1 | 19:10 |
| 99. | Kuru Kuru Kururin | 148 | 0.21% | 1 | 21:09 |
| 100. | Flashback | 146 | 0.20% | 5 | 3:18:58 |
