| 1. | Double Dragon III: The Sacred Stones | 674,024 | 15.75% | 7 | 5:33:17 |
| 2. | Teenage Mutant Ninja Turtles: Tournament Fighters | 263,120 | 6.15% | 4 | 2:03:09 |
| 3. | Super Mario Bros. | 224,616 | 5.25% | 3 | 1:57:43 |
| 4. | I Wanna Be the Guy | 200,601 | 4.69% | 3 | 2:50:59 |
| 5. | Crazy Taxi 3: High Roller | 177,244 | 4.14% | 1 | 45:06 |
| 6. | Mortal Kombat 3 | 139,580 | 3.26% | 10 | 3:03:57 |
| 7. | Captain America and The Avengers | 112,245 | 2.62% | 2 | 1:37:40 |
| 8. | Battletoads/Double Dragon | 100,387 | 2.35% | 5 | 3:22:09 |
| 9. | Disney's Aladdin | 98,171 | 2.29% | 3 | 1:19:46 |
| 10. | Punch-Out!! | 94,340 | 2.20% | 3 | 2:37:18 |
| 11. | James Bond Jr. | 90,125 | 2.11% | 1 | 2:45:51 |
| 12. | Arkanoid: Revenge of Doh | 89,348 | 2.09% | 3 | 5:45:10 |
| 13. | Mortal Kombat 4 | 76,564 | 1.79% | 3 | 1:33:48 |
| 14. | San Francisco Rush 2049 | 72,109 | 1.69% | 3 | 4:33:08 |
| 15. | Resident Evil: Deadly Silence | 65,709 | 1.54% | 4 | 8:30:05 |
| 16. | Crazy Taxi 2 | 53,975 | 1.26% | 1 | 29:13 |
| 17. | Adventure Island | 46,053 | 1.08% | 2 | 2:23:13 |
| 18. | Fighting Force | 39,658 | 0.93% | 2 | 6:28:45 |
| 19. | Zombie Revenge | 38,733 | 0.91% | 6 | 3:33:08 |
| 20. | Aero the Acro-Bat 2 | 33,148 | 0.77% | 2 | 5:15:55 |
| 21. | Saint Seiya: Ougon Densetsu Kanketsu Hen | 32,647 | 0.76% | 2 | 3:58:37 |
| 22. | Wario's Woods | 29,692 | 0.69% | 13 | 1:14:47:19 |
| 23. | Tekken 3 | 28,977 | 0.68% | 3 | 44:19 |
| 24. | Banana Prince | 28,266 | 0.66% | 1 | 1:04:45 |
| 25. | Contra | 27,214 | 0.64% | 2 | 44:53 |
| 26. | Side Pocket | 25,809 | 0.60% | 1 | 26:39 |
| 27. | Street Fighter V | 25,512 | 0.60% | 1 | 1:00:42 |
| 28. | Mortal Kombat II | 25,453 | 0.59% | 9 | 3:13:56 |
| 29. | Spider Solitaire | 25,145 | 0.59% | 1 | 1:18:03 |
| 30. | Street Fighter Zero 2 | 23,376 | 0.55% | 2 | 2:05:55 |
| 31. | Battletoads | 22,561 | 0.53% | 11 | 8:03:27 |
| 32. | Puzzle Bobble | 21,814 | 0.51% | 4 | 10:19:20 |
| 33. | Super Tetris 2: Bombliss | 20,838 | 0.49% | 5 | 13:07:39 |
| 34. | Puzzle Bobble 2 | 18,356 | 0.43% | 9 | 7:44:17 |
| 35. | Cosmic Wars | 18,293 | 0.43% | 2 | 1:12:05 |
| 36. | Championship Lode Runner | 18,270 | 0.43% | 1 | 4:15:25 |
| 37. | Arkanoid Returns | 17,772 | 0.42% | 2 | 4:52:43 |
| 38. | Dragon's Lair | 16,288 | 0.38% | 3 | 46:17 |
| 39. | Ghosts 'n Goblins | 16,232 | 0.38% | 7 | 11:20:23 |
| 40. | Bomberman | 15,631 | 0.37% | 1 | 2:05:38 |
| 41. | Mortal Kombat | 15,308 | 0.36% | 10 | 4:41:14 |
| 42. | Tiny Toon Adventures | 15,184 | 0.35% | 2 | 44:18 |
| 43. | The World's Hardest Game | 14,718 | 0.34% | 5 | 10:22:00 |
| 44. | Ultimate Mortal Kombat 3 | 14,672 | 0.34% | 4 | 2:05:49 |
| 45. | Arkanoid | 14,542 | 0.34% | 5 | 8:30:54 |
| 46. | Bokosuka Wars | 14,524 | 0.34% | 1 | 28:18 |
| 47. | Home Alone 2: Lost in New York | 13,902 | 0.32% | 1 | 21:29 |
| 48. | Teenage Mutant Ninja Turtles: Tournament Fighters | 13,592 | 0.32% | 1 | 37:33 |
| 49. | Doki Doki Panic | 13,435 | 0.31% | 2 | 7:11:44 |
| 50. | Bee 52 | 13,382 | 0.31% | 1 | 2:22:40 |
| 51. | Teenage Mutant Ninja Turtles | 13,296 | 0.31% | 7 | 8:29:10 |
| 52. | Street Fighter IV | 13,023 | 0.30% | 1 | 13:04 |
| 53. | Boogerman: A Pick and Flick Adventure | 12,876 | 0.30% | 1 | 18:56 |
| 54. | S.C.A.T.: Special Cybernetic Attack Team | 12,865 | 0.30% | 3 | 1:28:16 |
| 55. | Alien 3 | 12,396 | 0.29% | 1 | 31:31 |
| 56. | Capcom Arcade Stadium | 12,165 | 0.28% | 3 | 1:51:44 |
| 57. | Batman: The Video Game | 12,031 | 0.28% | 1 | 27:18 |
| 58. | Ninja Gaiden 3 | 11,320 | 0.26% | 1 | 2:38:26 |
| 59. | Contra Force | 10,862 | 0.25% | 2 | 1:28:11 |
| 60. | Super Contra | 10,512 | 0.25% | 2 | 46:03 |
| 61. | Chip 'n Dale Rescue Rangers | 10,188 | 0.24% | 9 | 3:22:59 |
| 62. | Street Fighter III | 9,877 | 0.23% | 1 | 23:51 |
| 63. | Mortal Kombat Gold | 9,651 | 0.23% | 2 | 40:41 |
| 64. | I Wanna Be the Boshy | 9,470 | 0.22% | 17 | 21:18:20 |
| 65. | Mario Bros. | 8,965 | 0.21% | 2 | 1:47:30 |
| 66. | Fatal Fury Special | 8,926 | 0.21% | 1 | 38:15 |
| 67. | Tekken 6 | 8,853 | 0.21% | 4 | 5:23:47 |
| 68. | Fatal Fury: King of Fighters | 8,805 | 0.21% | 2 | 51:30 |
| 69. | Double Dragon | 8,475 | 0.20% | 3 | 1:26:37 |
| 70. | Battle Kid 2: Mountain of Torment | 8,073 | 0.19% | 5 | 2:34:03 |
| 71. | Milon's Secret Castle | 7,954 | 0.19% | 2 | 2:53:51 |
| 72. | Flying Warriors | 7,878 | 0.18% | 1 | 7:41:05 |
| 73. | Puzzle Bobble 3 | 7,719 | 0.18% | 6 | 4:04:37 |
| 74. | Fatal Fury 2 | 7,612 | 0.18% | 2 | 1:16:15 |
| 75. | Tetris 2 BomBliss | 7,103 | 0.17% | 2 | 6:07:00 |
| 76. | Mortal Kombat Trilogy | 6,858 | 0.16% | 2 | 33:52 |
| 77. | Stormlord | 6,612 | 0.15% | 4 | 4:17:42 |
| 78. | Battletoads in Battlemaniacs | 6,060 | 0.14% | 3 | 1:36:07 |
| 79. | Tekken 2 | 5,782 | 0.14% | 3 | 1:50:46 |
| 80. | Super Tetris | 5,733 | 0.13% | 2 | 5:26:41 |
| 81. | Hook | 5,512 | 0.13% | 1 | 58:21 |
| 82. | Heavy Barrel | 5,495 | 0.13% | 3 | 1:23:47 |
| 83. | Resident Evil 2 | 5,152 | 0.12% | 24 | 1:14:06:37 |
| 84. | Silent Hill 4: The Room | 5,101 | 0.12% | 2 | 10:52:52 |
| 85. | Tetris Blast | 4,982 | 0.12% | 3 | 6:23:32 |
| 86. | Donkey Kong Country | 4,661 | 0.11% | 2 | 2:49:53 |
| 87. | Growl | 4,620 | 0.11% | 1 | 32:29 |
| 88. | Mega Man | 4,240 | 0.10% | 3 | 7:25:04 |
| 89. | Ultimate Ghosts 'n Goblins | 4,147 | 0.10% | 2 | 12:41:16 |
| 90. | Tekken 5 | 4,092 | 0.10% | 3 | 7:36:17 |
| 91. | Starship Hector | 3,886 | 0.09% | 1 | 21:58 |
| 92. | Power Blade 2 | 3,869 | 0.09% | 2 | 1:58:51 |
| 93. | Super Street Fighter II Turbo | 3,849 | 0.09% | 1 | 54:07 |
| 94. | Street Fighter II' Turbo: Hyper Fighting | 3,707 | 0.09% | 1 | 52:55 |
| 95. | Thexder | 3,680 | 0.09% | 1 | 6:02:08 |
| 96. | Road Fighter | 3,507 | 0.08% | 1 | 5:46 |
| 97. | Sailor Moon | 3,440 | 0.08% | 1 | 1:23:03 |
| 98. | Castlevania III: Dracula's Curse | 3,353 | 0.08% | 2 | 3:36:41 |
| 99. | Bird Week | 3,345 | 0.08% | 1 | 2:20:09 |
| 100. | Ice Climber | 3,327 | 0.08% | 2 | 2:50:30 |
