| 1. | Super Mario 64 | 38,460,113 | 31.71% | 25 | 4:59:41 |
| 2. | Super Mario Bros. 2 | 6,379,474 | 5.26% | 48 | 2:33:09 |
| 3. | Super Mario Advance 4: Super Mario Bros. 3 | 6,351,545 | 5.24% | 1 | 1:08:46 |
| 4. | Diddy Kong Racing | 2,850,956 | 2.35% | 1 | 2:09:54 |
| 5. | Super Mario World | 2,294,085 | 1.89% | 12 | 6:24:07 |
| 6. | Mortal Kombat 4 | 1,533,308 | 1.26% | 2 | 14:17 |
| 7. | Excitebike | 1,461,320 | 1.20% | 1 | 5:47 |
| 8. | Punch-Out!! | 1,302,737 | 1.07% | 16 | 57:24 |
| 9. | Killer Instinct | 1,250,493 | 1.03% | 3 | 35:09 |
| 10. | Ultimate Mortal Kombat 3 | 1,207,368 | 1.00% | 6 | 1:44:32 |
| 11. | Mario Kart 64 | 1,196,551 | 0.99% | 1 | 9:42 |
| 12. | Sonic the Hedgehog 3 | 1,143,390 | 0.94% | 8 | 5:57:43 |
| 13. | Street Fighter II | 1,142,646 | 0.94% | 10 | 2:20:56 |
| 14. | Donkey Kong Country | 1,138,795 | 0.94% | 45 | 2:53:22 |
| 15. | Mortal Kombat Trilogy | 939,469 | 0.77% | 11 | 37:52 |
| 16. | Super Mario Bros. | 818,384 | 0.67% | 48 | 3:39:12 |
| 17. | Super Mario RPG | 775,141 | 0.64% | 4 | 10:46:26 |
| 18. | Dragon Ball: Advanced Adventure | 736,975 | 0.61% | 1 | 47:19 |
| 19. | Super Mario All-Stars | 734,134 | 0.61% | 29 | 1:48:16 |
| 20. | Super Mario Bros. 3 | 721,544 | 0.59% | 7 | 4:00:21 |
| 21. | Donkey Kong Country 2 | 665,430 | 0.55% | 38 | 4:37:13 |
| 22. | Super Mario World 2: Yoshi's Island | 650,353 | 0.54% | 6 | 4:01:43 |
| 23. | New Super Mario Bros. | 645,239 | 0.53% | 4 | 2:12:24 |
| 24. | Mega Man 3 | 547,446 | 0.45% | 43 | 2:23:03 |
| 25. | Mario Pinball Land | 538,311 | 0.44% | 2 | 17:42 |
| 26. | Mortal Kombat Mythologies: Sub-Zero | 487,634 | 0.40% | 2 | 1:06:58 |
| 27. | Tomb Raider: The Angel of Darkness | 486,722 | 0.40% | 2 | 3:49:54 |
| 28. | Mortal Kombat II | 471,375 | 0.39% | 4 | 1:04:29 |
| 29. | Paper Mario | 455,066 | 0.38% | 1 | 4:12:06 |
| 30. | Super Mario Kart | 430,685 | 0.36% | 1 | 23:11 |
| 31. | Donkey Kong Country 3 | 429,912 | 0.35% | 32 | 3:40:21 |
| 32. | Mega Man X2 | 401,398 | 0.33% | 2 | 1:15:39 |
| 33. | Mega Man 7 | 398,527 | 0.33% | 3 | 1:43:33 |
| 34. | The Legend of Zelda: Majora's Mask | 396,739 | 0.33% | 2 | 3:59:20 |
| 35. | Punch-Out!! | 389,757 | 0.32% | 18 | 41:47 |
| 36. | Star Fox | 385,118 | 0.32% | 2 | 41:17 |
| 37. | Mega Man X5 | 370,324 | 0.31% | 6 | 3:13:53 |
| 38. | Sonic the Hedgehog | 366,288 | 0.30% | 7 | 2:14:07 |
| 39. | Mega Man 5 | 364,921 | 0.30% | 41 | 1:58:41 |
| 40. | Mario Kart Wii | 363,158 | 0.30% | 1 | 1:22:20 |
| 41. | Mega Man X4 | 345,425 | 0.28% | 3 | 2:04:42 |
| 42. | The Legend of Zelda: Ocarina of Time | 344,685 | 0.28% | 4 | 7:16:11 |
| 43. | Metroid: Zero Mission | 337,606 | 0.28% | 6 | 4:27:34 |
| 44. | Earthbound | 335,454 | 0.28% | 5 | 2:42:23 |
| 45. | Sonic Advance | 334,758 | 0.28% | 6 | 1:40:40 |
| 46. | Luigi's Mansion | 332,305 | 0.27% | 2 | 1:57:27 |
| 47. | Teenage Mutant Ninja Turtles | 318,694 | 0.26% | 5 | 1:52:52 |
| 48. | Pokémon Ruby and Sapphire | 314,994 | 0.26% | 2 | 3:17:52 |
| 49. | Marvel Super Heroes vs. Street Fighter | 314,013 | 0.26% | 2 | 28:53 |
| 50. | Zelda II: The Adventure of Link | 308,763 | 0.25% | 5 | 2:35:40 |
| 51. | Mega Man 2 | 305,904 | 0.25% | 37 | 1:52:04 |
| 52. | Super Punch-Out!! | 299,173 | 0.25% | 17 | 19:41 |
| 53. | Mega Man X | 298,300 | 0.25% | 4 | 2:38:55 |
| 54. | Mega Man 4 | 287,976 | 0.24% | 42 | 3:40:38 |
| 55. | Metroid | 278,106 | 0.23% | 4 | 46:11 |
| 56. | The Mask | 276,044 | 0.23% | 1 | 8:23 |
| 57. | Dungeons & Dragons: Shadow over Mystara | 273,161 | 0.23% | 2 | 38:43 |
| 58. | Mega Man | 269,774 | 0.22% | 23 | 1:25:54 |
| 59. | Streets of Rage 2 | 268,516 | 0.22% | 4 | 1:57:01 |
| 60. | Mega Man X3 | 267,280 | 0.22% | 3 | 2:19:51 |
| 61. | Super Smash Bros. | 258,410 | 0.21% | 2 | 20:02 |
| 62. | Mega Man X7 | 247,375 | 0.20% | 1 | 1:40:59 |
| 63. | Metal Slug X | 240,567 | 0.20% | 2 | 47:03 |
| 64. | Super Mario Bros.: The Lost Levels | 234,408 | 0.19% | 11 | 19:02 |
| 65. | Super Mario Land 2: 6 Golden Coins | 228,276 | 0.19% | 9 | 1:52:57 |
| 66. | Banjo-Kazooie | 228,047 | 0.19% | 1 | 2:39:07 |
| 67. | Dragon Quest III: The Seeds of Salvation | 227,657 | 0.19% | 3 | 4:43:48 |
| 68. | Kirby's Dream Course | 227,254 | 0.19% | 3 | 3:38:34 |
| 69. | Mega Man: The Wily Wars | 222,746 | 0.18% | 97 | 12:58 |
| 70. | GoldenEye 007 | 222,234 | 0.18% | 2 | 1:01:36 |
| 71. | Wario Land 4 | 214,834 | 0.18% | 2 | 1:58:49 |
| 72. | Teenage Mutant Ninja Turtles III: The Manhattan Project | 213,362 | 0.18% | 1 | 33:34 |
| 73. | Mega Man 6 | 211,858 | 0.17% | 40 | 35:45 |
| 74. | Mega Man Zero 2 | 209,583 | 0.17% | 2 | 1:54:48 |
| 75. | Disney's Aladdin | 208,504 | 0.17% | 3 | 51:09 |
| 76. | The Simpsons: Bart's Nightmare | 207,367 | 0.17% | 1 | 16:43 |
| 77. | Castlevania | 207,070 | 0.17% | 1 | 22:56 |
| 78. | Mega Man 10 | 197,569 | 0.16% | 2 | 1:13:35 |
| 79. | Adventure Island 3 | 194,630 | 0.16% | 1 | 20:29 |
| 80. | E.V.O.: Search for Eden | 193,745 | 0.16% | 4 | 1:18:13 |
| 81. | The SpongeBob SquarePants Movie | 189,690 | 0.16% | 2 | 58:29 |
| 82. | Castlevania: Harmony of Dissonance | 186,699 | 0.15% | 8 | 1:28:34 |
| 83. | Prince of Persia | 186,620 | 0.15% | 3 | 1:17:26 |
| 84. | Mega Man Zero 4 | 183,337 | 0.15% | 1 | 39:43 |
| 85. | Super Bomberman | 181,082 | 0.15% | 3 | 2:44:39 |
| 86. | Sonic the Hedgehog 2 | 180,136 | 0.15% | 5 | 1:54:55 |
| 87. | Tiny Toon Adventures: Buster Busts Loose! | 177,455 | 0.15% | 1 | 23:50 |
| 88. | Mega Man Zero | 176,100 | 0.15% | 3 | 1:21:05 |
| 89. | X-Men vs. Street Fighter | 175,024 | 0.14% | 1 | 14:13 |
| 90. | Mystical Ninja Starring Goemon | 171,618 | 0.14% | 2 | 3:28:59 |
| 91. | Pokémon Gold and Silver | 171,411 | 0.14% | 2 | 3:33:55 |
| 92. | Marvel Super Heroes In War of the Gems | 168,996 | 0.14% | 1 | 21:16 |
| 93. | Circus Charlie | 167,835 | 0.14% | 1 | 3:33 |
| 94. | Metroid II: Return of Samus | 166,203 | 0.14% | 3 | 2:13:13 |
| 95. | Final Fight 3 | 165,047 | 0.14% | 2 | 40:07 |
| 96. | Sonic Spinball | 162,837 | 0.13% | 3 | 28:08 |
| 97. | Ice Climber | 158,258 | 0.13% | 1 | 19:30 |
| 98. | Metroid Fusion | 153,183 | 0.13% | 3 | 4:22:25 |
| 99. | Super Bomberman 4 | 150,610 | 0.12% | 2 | 41:37 |
| 100. | Metal Slug 3 | 149,668 | 0.12% | 1 | 31:05 |
