| 1. | Super Mario Bros. 3 | 1,203,133 | 17.92% | 8 | 6:02:23 |
| 2. | Super Mario World | 729,673 | 10.87% | 18 | 13:59:43 |
| 3. | Donkey Kong Country | 529,498 | 7.89% | 4 | 3:40:53 |
| 4. | Donkey Kong Country 2 | 369,903 | 5.51% | 2 | 2:13:01 |
| 5. | Metroid Fusion | 238,188 | 3.55% | 2 | 3:01:00 |
| 6. | Battletoads/Double Dragon | 235,345 | 3.51% | 2 | 37:19 |
| 7. | Super Mario All-Stars | 226,964 | 3.38% | 2 | 1:46:21 |
| 8. | Lunar Pool | 184,887 | 2.75% | 1 | 38:27 |
| 9. | Super Metroid | 163,393 | 2.43% | 21 | 18:44:50 |
| 10. | Mega Man 7 | 162,661 | 2.42% | 2 | 1:34:08 |
| 11. | Ultimate Mortal Kombat 3 | 148,198 | 2.21% | 1 | 20:35 |
| 12. | Tetris | 111,452 | 1.66% | 7 | 19:24 |
| 13. | Super Mario Bros. | 104,777 | 1.56% | 25 | 5:52:40 |
| 14. | Metroid II: Return of Samus | 91,123 | 1.36% | 2 | 1:40:26 |
| 15. | Road Runner's Death Valley Rally | 77,923 | 1.16% | 1 | 23:07 |
| 16. | Mega Man X | 70,433 | 1.05% | 6 | 4:49:33 |
| 17. | Contra III: The Alien Wars | 68,591 | 1.02% | 3 | 25:01 |
| 18. | Mighty Morphin Power Rangers | 68,031 | 1.01% | 1 | 29:41 |
| 19. | Mega Man | 63,261 | 0.94% | 9 | 4:02:32 |
| 20. | Gradius III | 59,505 | 0.89% | 2 | 1:03:47 |
| 21. | Marvel Super Heroes | 55,634 | 0.83% | 1 | 21:15 |
| 22. | Mega Man X2 | 55,200 | 0.82% | 5 | 7:12:36 |
| 23. | Earthbound | 54,720 | 0.82% | 6 | 6:53:02 |
| 24. | Pokémon Ruby and Sapphire | 52,774 | 0.79% | 4 | 6:54:58 |
| 25. | Breath of Fire II | 52,311 | 0.78% | 1 | 5:00:25 |
| 26. | Mega Man Zero 3 | 48,195 | 0.72% | 2 | 2:07:52 |
| 27. | Metroid | 44,279 | 0.66% | 5 | 1:26:01 |
| 28. | Spider-Man and the X-Men in Arcade's Revenge | 40,648 | 0.61% | 10 | 55:04 |
| 29. | Pokémon Yellow | 38,749 | 0.58% | 1 | 3:12 |
| 30. | The Legend of Zelda: A Link to the Past | 37,174 | 0.55% | 3 | 1:47:35 |
| 31. | Somari | 36,995 | 0.55% | 1 | 24:48 |
| 32. | Tiny Toon Adventures 2: Trouble in Wackyland | 31,096 | 0.46% | 1 | 16:14 |
| 33. | Mega Man & Bass | 30,300 | 0.45% | 5 | 2:50:50 |
| 34. | Bugs Bunny: Crazy Castle 3 | 27,925 | 0.42% | 1 | 22:29 |
| 35. | Toy Story | 27,330 | 0.41% | 1 | 25:41 |
| 36. | Sonic CD | 27,026 | 0.40% | 1 | 22:38 |
| 37. | Kirby & the Amazing Mirror | 25,701 | 0.38% | 1 | 1:01:07 |
| 38. | Donkey Kong Country 3 | 23,674 | 0.35% | 2 | 1:58:48 |
| 39. | Road Fighter | 23,224 | 0.35% | 1 | 4:52 |
| 40. | Battletoads in Battlemaniacs | 22,767 | 0.34% | 1 | 20:41 |
| 41. | Wai Wai World | 22,728 | 0.34% | 2 | 1:07:24 |
| 42. | Mega Man Zero | 21,887 | 0.33% | 4 | 1:59:05 |
| 43. | Super Mario Kart | 21,826 | 0.33% | 1 | 25:00 |
| 44. | X-Men 2: Clone Wars | 19,890 | 0.30% | 1 | 35:05 |
| 45. | The Bugs Bunny Crazy Castle | 19,723 | 0.29% | 8 | 2:37:21 |
| 46. | Crash Bandicoot 2: N-Tranced | 19,273 | 0.29% | 1 | 34:34 |
| 47. | Kirby Super Star | 18,761 | 0.28% | 2 | 1:40:42 |
| 48. | The Legend of Zelda: Link's Awakening | 18,343 | 0.27% | 12 | 9:47:53 |
| 49. | Super Mario World 2: Yoshi's Island | 18,032 | 0.27% | 2 | 1:53:55 |
| 50. | The Legend of Zelda | 17,670 | 0.26% | 5 | 2:06:36 |
| 51. | Super Mario RPG | 16,293 | 0.24% | 3 | 8:42:29 |
| 52. | Rad Racer | 14,497 | 0.22% | 1 | 23:10 |
| 53. | Mega Man 2 | 14,460 | 0.22% | 2 | 56:35 |
| 54. | Mega Man X3 | 13,249 | 0.20% | 4 | 6:56:16 |
| 55. | Disney's Aladdin | 13,180 | 0.20% | 2 | 45:59 |
| 56. | Yoshi's Story | 12,951 | 0.19% | 1 | 16:06 |
| 57. | M.C. Kids | 11,753 | 0.18% | 4 | 1:37:31 |
| 58. | Pokémon Gold and Silver | 11,552 | 0.17% | 1 | 2:58:24 |
| 59. | Super Castlevania IV | 11,469 | 0.17% | 1 | 37:56 |
| 60. | Mega Man Zero 4 | 11,303 | 0.17% | 1 | 45:17 |
| 61. | Zelda II: The Adventure of Link | 10,187 | 0.15% | 6 | 3:41:37 |
| 62. | Adventure Island 3 | 10,138 | 0.15% | 2 | 47:43 |
| 63. | Tetris Attack | 10,073 | 0.15% | 5 | 26:29 |
| 64. | Ristar | 10,036 | 0.15% | 1 | 31:26 |
| 65. | Teenage Mutant Ninja Turtles | 9,447 | 0.14% | 3 | 56:32 |
| 66. | Top Gun: The Second Mission | 9,282 | 0.14% | 1 | 15:26 |
| 67. | Battletoads | 9,092 | 0.14% | 3 | 1:18:35 |
| 68. | Jackie Chan's Action Kung Fu | 8,985 | 0.13% | 2 | 39:15 |
| 69. | Ninja Gaiden | 8,854 | 0.13% | 7 | 4:34:08 |
| 70. | Ninja Gaiden III: The Ancient Ship of Doom | 8,765 | 0.13% | 2 | 33:01 |
| 71. | Chip 'n Dale Rescue Rangers 2 | 8,183 | 0.12% | 5 | 1:23:15 |
| 72. | Yokai Dochuki | 8,176 | 0.12% | 1 | 15:12 |
| 73. | Mario Bros. | 7,908 | 0.12% | 1 | 10:17 |
| 74. | Mega Man: Dr. Wily's Revenge | 7,818 | 0.12% | 1 | 21:51 |
| 75. | Dr. Jekyll and Mr. Hyde | 7,469 | 0.11% | 1 | 18:53 |
| 76. | Nintendo World Cup | 7,312 | 0.11% | 1 | 7:03 |
| 77. | Final Fantasy IV | 7,107 | 0.11% | 1 | 3:11:50 |
| 78. | Mega Man 3 | 7,073 | 0.11% | 5 | 3:55:59 |
| 79. | Teenage Mutant Ninja Turtles: Turtles in Time | 6,833 | 0.10% | 1 | 31:47 |
| 80. | Legacy of the Wizard | 6,758 | 0.10% | 2 | 42:27 |
| 81. | Super Mario Bros. 2 | 6,404 | 0.10% | 17 | 3:24:20 |
| 82. | Final Fantasy Mystic Quest | 6,392 | 0.10% | 3 | 6:06:07 |
| 83. | Maui Mallard in Cold Shadow | 6,160 | 0.09% | 1 | 32:45 |
| 84. | Contra 4 | 5,742 | 0.09% | 1 | 30:51 |
| 85. | The Young Indiana Jones Chronicles | 5,710 | 0.09% | 1 | 13:26 |
| 86. | Gunstar Super Heroes | 5,566 | 0.08% | 1 | 20:16 |
| 87. | Sparkster | 5,337 | 0.08% | 2 | 53:08 |
| 88. | Mickey Mousecapade | 5,171 | 0.08% | 1 | 7:38 |
| 89. | Ninja Gaiden II: The Dark Sword of Chaos | 5,171 | 0.08% | 3 | 51:56 |
| 90. | Secret of Evermore | 4,909 | 0.07% | 1 | 2:55:09 |
| 91. | Star Ocean | 4,866 | 0.07% | 1 | 2:00:00 |
| 92. | Arkanoid | 4,776 | 0.07% | 2 | 10:44 |
| 93. | Prince of Persia: The Sands of Time | 4,773 | 0.07% | 2 | 1:20:54 |
| 94. | Alien Soldier | 4,750 | 0.07% | 1 | 25:00 |
| 95. | Bucky O'Hare | 4,644 | 0.07% | 1 | 27:44 |
| 96. | Punch-Out!! | 4,636 | 0.07% | 4 | 1:16:58 |
| 97. | Solomon's Key | 4,591 | 0.07% | 1 | 28:02 |
| 98. | Gyromite | 4,542 | 0.07% | 1 | 23:17 |
| 99. | Alisia Dragoon | 4,368 | 0.07% | 1 | 17:20 |
| 100. | Super Dodge Ball | 4,299 | 0.06% | 1 | 7:30 |
