| 1. | Breath of Fire III | 191,750 | 12.21% | 181 | 1:10:06:36 |
| 2. | Metal Gear Solid | 132,680 | 8.45% | 60 | 9:49:28 |
| 3. | Breath of Fire II | 107,652 | 6.86% | 147 | 1:02:08:38 |
| 4. | The Legend of Zelda: Link's Awakening | 88,237 | 5.62% | 62 | 11:17:49 |
| 5. | The Legend of Zelda: Four Swords | 44,747 | 2.85% | 17 | 3:01:43 |
| 6. | Donkey Kong Country 3 | 41,450 | 2.64% | 47 | 7:18:46 |
| 7. | Mario & Luigi: Partners in Time | 40,265 | 2.56% | 64 | 16:31:15 |
| 8. | The Legend of Zelda: A Link to the Past | 30,947 | 1.97% | 62 | 22:39:04 |
| 9. | Animaniacs | 29,494 | 1.88% | 9 | 1:35:35 |
| 10. | Kirby Super Star | 27,897 | 1.78% | 32 | 5:35:10 |
| 11. | Bomberman 64: The Second Attack! | 22,529 | 1.44% | 80 | 18:05:49 |
| 12. | Parasite Eve | 21,575 | 1.37% | 62 | 11:15:45 |
| 13. | Super Mario Bros. 3 | 20,336 | 1.30% | 23 | 3:51:08 |
| 14. | Pokémon Red and Blue | 17,707 | 1.13% | 90 | 1:02:15:52 |
| 15. | Kirby's Dream Land 3 | 17,074 | 1.09% | 37 | 6:08:19 |
| 16. | Castlevania: Symphony of the Night | 15,387 | 0.98% | 80 | 20:05:35 |
| 17. | Rhythm Tengoku | 13,134 | 0.84% | 18 | 3:21:38 |
| 18. | Gargoyle's Quest | 13,104 | 0.83% | 22 | 4:10:45 |
| 19. | Bomberman Land Touch! | 12,226 | 0.78% | 20 | 5:40:18 |
| 20. | Super Bomberman | 11,172 | 0.71% | 15 | 2:38:45 |
| 21. | The Smurfs' Nightmare | 10,051 | 0.64% | 8 | 2:12:03 |
| 22. | Castlevania: Rondo of Blood | 9,966 | 0.63% | 16 | 2:25:51 |
| 23. | Goemon's Great Adventure | 9,206 | 0.59% | 50 | 10:21:25 |
| 24. | Kirby's Dream Land 2 | 8,668 | 0.55% | 12 | 1:55:13 |
| 25. | Kirby's Avalanche | 8,347 | 0.53% | 8 | 1:24:04 |
| 26. | ActRaiser | 8,313 | 0.53% | 31 | 5:40:37 |
| 27. | Super Mario Bros. | 8,182 | 0.52% | 19 | 7:42:12 |
| 28. | Puyo Puyo Sun | 8,130 | 0.52% | 10 | 2:33:01 |
| 29. | Castlevania: Dracula X | 8,077 | 0.51% | 37 | 5:37:35 |
| 30. | Kid Icarus: Of Myths and Monsters | 8,042 | 0.51% | 11 | 1:36:38 |
| 31. | Super Mario World | 7,983 | 0.51% | 59 | 13:46:37 |
| 32. | Soul Blazer | 7,660 | 0.49% | 47 | 8:14:36 |
| 33. | Rhythm Heaven | 6,913 | 0.44% | 4 | 1:14:06 |
| 34. | Kirby 64: The Crystal Shards | 6,559 | 0.42% | 15 | 2:35:25 |
| 35. | Castlevania | 6,471 | 0.41% | 35 | 9:24:56 |
| 36. | Dragon Quest III: The Seeds of Salvation | 6,400 | 0.41% | 79 | 1:00:33:17 |
| 37. | Mickey Mania | 6,365 | 0.41% | 4 | 1:08:52 |
| 38. | Tiny Toon Adventures | 6,125 | 0.39% | 19 | 3:49:03 |
| 39. | Final Fantasy Mystic Quest | 5,815 | 0.37% | 43 | 11:36:45 |
| 40. | Demon's Crest | 5,790 | 0.37% | 21 | 3:43:18 |
| 41. | Treasure Hunter G | 5,695 | 0.36% | 66 | 17:52:17 |
| 42. | Mega Man Legends | 5,506 | 0.35% | 35 | 10:05:46 |
| 43. | Tetris Attack | 5,292 | 0.34% | 15 | 5:56:52 |
| 44. | Super Bomberman 5 | 5,237 | 0.33% | 29 | 5:06:13 |
| 45. | Parodius! From Myth to Laughter | 5,030 | 0.32% | 9 | 1:34:36 |
| 46. | Faxanadu | 4,884 | 0.31% | 26 | 4:29:17 |
| 47. | Castlevania: Legacy of Darkness | 4,756 | 0.30% | 22 | 6:51:14 |
| 48. | Hugo 2 | 4,739 | 0.30% | 1 | 22:41 |
| 49. | Pokémon Emerald | 4,708 | 0.30% | 66 | 1:02:52:34 |
| 50. | Puyo Puyo 2 | 4,689 | 0.30% | 29 | 10:29:27 |
| 51. | Super Mario RPG | 4,681 | 0.30% | 55 | 15:29:35 |
| 52. | Mario Kart Wii | 4,499 | 0.29% | 7 | 17:36 |
| 53. | Puyo Puyo 7 | 4,473 | 0.28% | 17 | 2:46:53 |
| 54. | Kirby's Block Ball | 4,432 | 0.28% | 10 | 1:50:01 |
| 55. | Castlevania | 4,167 | 0.27% | 12 | 2:28:33 |
| 56. | Donkey Kong Country | 3,990 | 0.25% | 22 | 4:12:30 |
| 57. | Mischief Makers | 3,947 | 0.25% | 28 | 4:59:39 |
| 58. | Mega Man 3 | 3,931 | 0.25% | 32 | 5:43:40 |
| 59. | Street Fighter III: 2nd Impact | 3,869 | 0.25% | 2 | 18:36 |
| 60. | Mighty Morphin Power Rangers | 3,828 | 0.24% | 6 | 1:27:22 |
| 61. | Paper Mario | 3,786 | 0.24% | 86 | 1:02:05:54 |
| 62. | Crusader of Centy | 3,781 | 0.24% | 17 | 3:20:54 |
| 63. | Final Fantasy VI | 3,701 | 0.24% | 4 | 42:57 |
| 64. | Cave Story | 3,483 | 0.22% | 13 | 2:46:36 |
| 65. | Tales of Destiny | 3,474 | 0.22% | 234 | 3:15:07:01 |
| 66. | Castlevania: The Adventure | 3,458 | 0.22% | 7 | 1:06:55 |
| 67. | Crash Bandicoot: Warped | 3,365 | 0.21% | 38 | 10:47:42 |
| 68. | Kirby & the Amazing Mirror | 3,335 | 0.21% | 27 | 7:49:35 |
| 69. | Chip 'n Dale Rescue Rangers | 3,323 | 0.21% | 6 | 56:51 |
| 70. | Kirby's Dream Course | 3,245 | 0.21% | 20 | 5:50:16 |
| 71. | Castlevania II: Simon's Quest | 3,106 | 0.20% | 16 | 2:47:24 |
| 72. | Secret of Mana | 3,095 | 0.20% | 56 | 19:17:20 |
| 73. | Diddy Kong Racing | 3,094 | 0.20% | 24 | 6:59:23 |
| 74. | Sonic the Fighters | 2,895 | 0.18% | 2 | 24:51 |
| 75. | Super Mario Kart | 2,880 | 0.18% | 12 | 2:57:13 |
| 76. | Mega Man | 2,844 | 0.18% | 27 | 4:56:33 |
| 77. | Bomberman 64 | 2,786 | 0.18% | 35 | 9:35:25 |
| 78. | Pokémon Card GB2: GR-dan Sanjou! | 2,776 | 0.18% | 45 | 20:43:16 |
| 79. | Breath of Fire IV | 2,731 | 0.17% | 90 | 1:08:12:25 |
| 80. | Super Mario Land 2: 6 Golden Coins | 2,667 | 0.17% | 13 | 3:14:20 |
| 81. | Castlevania II: Belmont's Revenge | 2,656 | 0.17% | 7 | 1:09:41 |
| 82. | Super Bomberman 2 | 2,643 | 0.17% | 6 | 1:38:06 |
| 83. | Street Fighter III: New Generation | 2,568 | 0.16% | 4 | 35:55 |
| 84. | Ganbare Goemon 2 | 2,454 | 0.16% | 30 | 7:18:26 |
| 85. | Little Nemo: The Dream Master | 2,449 | 0.16% | 9 | 2:20:29 |
| 86. | Panel de Pon | 2,395 | 0.15% | 3 | 24:35 |
| 87. | Castlevania: Bloodlines | 2,391 | 0.15% | 9 | 1:35:27 |
| 88. | Mega Man 7 | 2,387 | 0.15% | 17 | 2:55:27 |
| 89. | Kirby's Adventure | 2,383 | 0.15% | 20 | 3:04:26 |
| 90. | Super Castlevania IV | 2,368 | 0.15% | 13 | 2:19:24 |
| 91. | Sonic the Hedgehog 2 | 2,331 | 0.15% | 9 | 2:10:40 |
| 92. | F-Zero X | 2,329 | 0.15% | 9 | 3:13:12 |
| 93. | Castlevania III: Dracula's Curse | 2,237 | 0.14% | 15 | 5:22:03 |
| 94. | Mega Man Legends 2 | 2,207 | 0.14% | 21 | 5:38:59 |
| 95. | Castle of Illusion Starring Mickey Mouse | 2,193 | 0.14% | 6 | 1:07:45 |
| 96. | Super Mario Land | 2,173 | 0.14% | 4 | 42:32 |
| 97. | Bomberman Online | 2,171 | 0.14% | 4 | 36:44 |
| 98. | Donkey Kong | 2,137 | 0.14% | 13 | 2:25:15 |
| 99. | Klonoa 2: Dream Champ Tournament | 2,130 | 0.14% | 21 | 4:10:26 |
| 100. | The Smurfs | 2,076 | 0.13% | 1 | 20:00 |
