| 1. | Dragon Quest III: The Seeds of Salvation | 685,328 | 7.25% | 29 | 2:12:17:03 |
| 2. | Dragon Quest VI: Realms of Revelation | 572,379 | 6.05% | 27 | 2:03:31:36 |
| 3. | Dragon Quest VIII: The Journey of the Cursed King | 556,416 | 5.88% | 27 | 3:09:57:19 |
| 4. | Dragon Quest II: Luminaries of the Legendary Line | 478,993 | 5.07% | 16 | 19:18:52 |
| 5. | Dragon Quest V: Hand of the Heavenly Bride | 446,858 | 4.73% | 36 | 2:17:30:28 |
| 6. | Dragon Quest VII: Fragments of the Forgotten Past | 266,649 | 2.82% | 69 | 6:11:41:43 |
| 7. | Super Mario World | 254,018 | 2.69% | 18 | 2:11:37:40 |
| 8. | Super Ghouls 'n Ghosts | 246,899 | 2.61% | 5 | 21:15:48 |
| 9. | Mystery Dungeon: Shiren the Wanderer | 224,516 | 2.37% | 29 | 3:14:56:18 |
| 10. | Chrono Trigger | 138,481 | 1.46% | 9 | 1:02:40:15 |
| 11. | Final Fantasy III | 122,981 | 1.30% | 15 | 1:08:14:52 |
| 12. | Ghosts 'n Goblins | 115,416 | 1.22% | 5 | 14:32:04 |
| 13. | Contra III: The Alien Wars | 114,744 | 1.21% | 3 | 10:46:22 |
| 14. | Final Fantasy VI | 104,153 | 1.10% | 9 | 0:00 |
| 15. | The Legend of Zelda: A Link to the Past | 102,500 | 1.08% | 7 | 1:01:47:43 |
| 16. | Dragon Quest IV: Chapters of the Chosen | 99,002 | 1.05% | 15 | 1:10:39:20 |
| 17. | Dragon Quest | 92,891 | 0.98% | 7 | 8:31:17 |
| 18. | Super Mario Kart | 88,025 | 0.93% | 2 | 6:35:26 |
| 19. | Culdcept Revolt | 86,149 | 0.91% | 10 | 1:11:34:39 |
| 20. | Dragon Quest IX: Sentinels of the Starry Skies | 85,993 | 0.91% | 12 | 0:00 |
| 21. | Mega Man 2 | 83,602 | 0.88% | 7 | 0:00 |
| 22. | Fire Emblem: Mystery of the Emblem | 75,175 | 0.80% | 23 | 2:13:23:38 |
| 23. | Super Bomberman 5 | 63,217 | 0.67% | 5 | 16:20:16 |
| 24. | The Legend of Zelda: A Link Between Worlds | 56,097 | 0.59% | 6 | 0:00 |
| 25. | Treasure of the Rudras | 52,636 | 0.56% | 5 | 17:39:54 |
| 26. | Ghouls 'n Ghosts | 52,239 | 0.55% | 4 | 7:45:44 |
| 27. | Gokujo Parodius | 51,675 | 0.55% | 3 | 3:52:43 |
| 28. | Final Fantasy V | 49,811 | 0.53% | 14 | 2:02:03:23 |
| 29. | Banjo-Kazooie | 47,003 | 0.50% | 6 | 18:35:53 |
| 30. | Metal Gear Solid 3: Snake Eater | 46,805 | 0.50% | 6 | 18:26:15 |
| 31. | The Legend of the Mystical Ninja | 46,310 | 0.49% | 3 | 9:25:08 |
| 32. | Elevator Action | 45,144 | 0.48% | 2 | 6:42:44 |
| 33. | RPG Maker 95 | 42,134 | 0.45% | 1 | 4:01:29 |
| 34. | U.N. Squadron | 42,061 | 0.44% | 3 | 8:43:59 |
| 35. | Chrono Cross | 40,539 | 0.43% | 2 | 7:24:50 |
| 36. | Earthbound | 34,573 | 0.37% | 6 | 0:00 |
| 37. | Super Mario Bros. 3 | 33,019 | 0.35% | 3 | 8:28:56 |
| 38. | Gradius III | 24,645 | 0.26% | 1 | 2:42:02 |
| 39. | RPG Maker | 24,155 | 0.26% | 6 | 18:23:10 |
| 40. | Final Fight | 23,398 | 0.25% | 1 | 2:30:29 |
| 41. | Super Bomberman | 22,591 | 0.24% | 2 | 5:44:17 |
| 42. | Final Fight 2 | 20,900 | 0.22% | 2 | 5:33:48 |
| 43. | Metal Gear Solid 2: Sons of Liberty | 20,743 | 0.22% | 6 | 16:02:27 |
| 44. | Romancing SaGa 2 | 20,703 | 0.22% | 12 | 1:11:00:27 |
| 45. | Grand Theft Auto III | 20,017 | 0.21% | 2 | 5:25:40 |
| 46. | Mystery Tower | 19,570 | 0.21% | 2 | 0:00 |
| 47. | Fire Emblem: Genealogy of the Holy War | 19,540 | 0.21% | 11 | 1:04:02:14 |
| 48. | Mega Man X2 | 19,367 | 0.20% | 2 | 0:00 |
| 49. | Super Bomberman 3 | 18,520 | 0.20% | 1 | 3:53:26 |
| 50. | Tower of Babel | 16,698 | 0.18% | 2 | 0:00 |
| 51. | The Goonies | 15,879 | 0.17% | 2 | 0:00 |
| 52. | RPG Maker 3 | 15,508 | 0.16% | 3 | 7:14:48 |
| 53. | Demon's Crest | 15,286 | 0.16% | 1 | 2:55:43 |
| 54. | ActRaiser | 14,247 | 0.15% | 6 | 12:08:42 |
| 55. | Mega Man | 13,392 | 0.14% | 1 | 0:00 |
| 56. | Tokimeki Memorial | 11,578 | 0.12% | 2 | 8:14:07 |
| 57. | Super Mario Bros.: The Lost Levels | 10,790 | 0.11% | 1 | 0:00 |
| 58. | Lode Runner | 10,210 | 0.11% | 3 | 0:00 |
| 59. | The Immortal | 9,430 | 0.10% | 2 | 0:00 |
| 60. | Metal Gear Solid | 8,491 | 0.09% | 6 | 14:37:19 |
| 61. | Mega Man 7 | 8,437 | 0.09% | 1 | 0:00 |
| 62. | Castlevania III: Dracula's Curse | 8,142 | 0.09% | 2 | 0:00 |
| 63. | Mario Kart 64 | 7,951 | 0.08% | 1 | 3:16:21 |
| 64. | Final Fantasy VII | 7,319 | 0.08% | 4 | 15:24:55 |
| 65. | Darius Twin | 6,658 | 0.07% | 1 | 0:00 |
| 66. | Metal Gear 2: Solid Snake | 6,637 | 0.07% | 1 | 0:00 |
| 67. | Metal Gear | 6,321 | 0.07% | 1 | 0:00 |
| 68. | Splatterhouse | 6,219 | 0.07% | 1 | 0:00 |
| 69. | Mega Man 3 | 5,514 | 0.06% | 1 | 0:00 |
| 70. | The Castle | 5,264 | 0.06% | 1 | 0:00 |
| 71. | ActRaiser 2 | 5,189 | 0.05% | 6 | 15:58:29 |
| 72. | Civilization | 4,715 | 0.05% | 1 | 0:00 |
| 73. | Puzzle Bobble | 4,215 | 0.04% | 1 | 0:00 |
| 74. | Elevator Action Returns | 3,782 | 0.04% | 1 | 0:00 |
| 75. | Cho Aniki | 3,541 | 0.04% | 2 | 0:00 |
| 76. | Katamari Damacy | 3,459 | 0.04% | 1 | 0:00 |
| 77. | Arnold Palmer Tournament Golf | 3,366 | 0.04% | 2 | 2:44:52 |
| 78. | Lemmings | 3,342 | 0.04% | 5 | 23:08:30 |
| 79. | Burger Burger | 3,107 | 0.03% | 1 | 0:00 |
| 80. | Gradius | 3,014 | 0.03% | 1 | 0:00 |
| 81. | Spelunker | 2,913 | 0.03% | 2 | 4:28:53 |
| 82. | Hoshi Wo Miru Hito | 2,881 | 0.03% | 2 | 5:49:34 |
| 83. | Golden Axe | 2,274 | 0.02% | 1 | 0:00 |
| 84. | Populous | 2,196 | 0.02% | 2 | 6:15:35 |
| 85. | Tetris 99 | 2,162 | 0.02% | 2 | 10:57:53 |
| 86. | Wagyan Paradise | 2,111 | 0.02% | 2 | 6:17:19 |
| 87. | Mappy | 1,885 | 0.02% | 1 | 2:09:16 |
| 88. | Herzog Zwei | 1,826 | 0.02% | 2 | 12:28:46 |
| 89. | Kamaitachi no Yoru | 1,822 | 0.02% | 1 | 2:58:37 |
| 90. | The Tower of Druaga | 1,644 | 0.02% | 1 | 2:41:29 |
| 91. | Fantasy Zone | 1,615 | 0.02% | 1 | 2:57:25 |
| 92. | I.Q.: Intelligent Qube | 1,465 | 0.02% | 2 | 6:08:29 |
| 93. | Renegade | 1,454 | 0.02% | 1 | 2:59:12 |
| 94. | Commando | 1,370 | 0.01% | 1 | 2:01:58 |
| 95. | Tiger-Heli | 1,309 | 0.01% | 2 | 9:07:15 |
| 96. | Evony | 1,214 | 0.01% | 1 | 1:40:55 |
| 97. | F-Zero | 1,199 | 0.01% | 1 | 2:46:10 |
| 98. | Street Fighter II | 1,158 | 0.01% | 1 | 2:38:19 |
| 99. | Pilotwings | 1,110 | 0.01% | 1 | 3:08:50 |
| 100. | Myst | 895 | 0.01% | 1 | 2:02:29 |
