| 1. | Secret of Mana | 167,983 | 14.36% | 187 | 1:20:47:52 |
| 2. | Uncharted 2: Among Thieves | 98,747 | 8.44% | 61 | 9:21:52 |
| 3. | Super Metroid | 97,129 | 8.30% | 98 | 3:08:28:56 |
| 4. | Illusion of Gaia | 67,276 | 5.75% | 118 | 23:03:02 |
| 5. | Heavy Rain | 58,694 | 5.02% | 54 | 8:43:13 |
| 6. | Super Mario World | 43,913 | 3.75% | 32 | 5:59:12 |
| 7. | Nintendo World Cup | 36,334 | 3.11% | 19 | 3:01:02 |
| 8. | Seiken Densetsu 3 | 30,624 | 2.62% | 88 | 19:36:17 |
| 9. | Metal Gear 2: Solid Snake | 29,843 | 2.55% | 39 | 8:25:30 |
| 10. | Contra: Evolution | 27,172 | 2.32% | 1 | 24:00 |
| 11. | WWF No Mercy | 20,520 | 1.75% | 9 | 3:02:30 |
| 12. | Snatcher | 17,521 | 1.50% | 71 | 12:18:11 |
| 13. | Leisure Suit Larry 5: Passionate Patti Does a Little Undercover Work | 14,371 | 1.23% | 21 | 6:14:14 |
| 14. | Resident Evil | 12,967 | 1.11% | 44 | 14:47:06 |
| 15. | Policenauts | 12,278 | 1.05% | 77 | 23:21:35 |
| 16. | Terranigma | 12,181 | 1.04% | 111 | 21:00:50 |
| 17. | Flashback | 10,583 | 0.90% | 17 | 2:42:37 |
| 18. | International Superstar Soccer 64 | 10,379 | 0.89% | 1 | 22:50 |
| 19. | Metal Gear | 9,847 | 0.84% | 13 | 2:13:01 |
| 20. | Metroid: Other M | 9,256 | 0.79% | 37 | 8:01:47 |
| 21. | StarTropics | 7,191 | 0.61% | 18 | 2:36:00 |
| 22. | Super Mario World 2: Yoshi's Island | 7,156 | 0.61% | 34 | 10:15:40 |
| 23. | Day of the Tentacle | 7,037 | 0.60% | 17 | 3:00:04 |
| 24. | Metal Gear Solid 2: Sons of Liberty | 6,710 | 0.57% | 41 | 21:23:35 |
| 25. | Haunting Ground | 6,624 | 0.57% | 66 | 15:56:02 |
| 26. | Grandia | 6,490 | 0.55% | 157 | 1:09:14:25 |
| 27. | Resident Evil 2 | 6,273 | 0.54% | 51 | 20:24:53 |
| 28. | Wave Race 64 | 5,955 | 0.51% | 4 | 32:39 |
| 29. | Metal Gear Solid | 5,847 | 0.50% | 61 | 1:02:43:46 |
| 30. | Donkey Kong Country | 5,726 | 0.49% | 18 | 4:54:18 |
| 31. | Resident Evil | 5,668 | 0.48% | 18 | 4:35:11 |
| 32. | Resident Evil 4 | 5,510 | 0.47% | 88 | 15:13:49 |
| 33. | Mega Man 3 | 5,082 | 0.43% | 9 | 1:13:05 |
| 34. | Shin Megami Tensei: Persona | 4,911 | 0.42% | 213 | 2:23:26:21 |
| 35. | The Legend of Zelda: A Link to the Past | 4,805 | 0.41% | 34 | 18:17:06 |
| 36. | Left 4 Dead 2 | 4,769 | 0.41% | 36 | 7:54:00 |
| 37. | Resident Evil 4 | 4,528 | 0.39% | 47 | 21:51:05 |
| 38. | Super Castlevania IV | 4,348 | 0.37% | 12 | 2:00:35 |
| 39. | Red Dead Redemption | 4,318 | 0.37% | 10 | 2:17:57 |
| 40. | Resident Evil 5 | 4,252 | 0.36% | 51 | 20:58:51 |
| 41. | Metroid Prime | 4,063 | 0.35% | 85 | 1:13:29:39 |
| 42. | Super Bomberman | 3,736 | 0.32% | 13 | 2:10:38 |
| 43. | Teenage Mutant Ninja Turtles | 3,735 | 0.32% | 12 | 2:03:08 |
| 44. | Teenage Mutant Ninja Turtles: Turtles in Time | 3,673 | 0.31% | 5 | 53:21 |
| 45. | Persona 5 | 3,447 | 0.29% | 278 | 3:20:53:34 |
| 46. | International Superstar Soccer Deluxe | 3,396 | 0.29% | 7 | 1:44:27 |
| 47. | Resident Evil 3 | 3,355 | 0.29% | 42 | 13:33:04 |
| 48. | Muramasa: The Demon Blade | 3,313 | 0.28% | 41 | 10:10:26 |
| 49. | Final Fantasy IX | 3,222 | 0.28% | 116 | 1:15:35:13 |
| 50. | Metroid Fusion | 3,175 | 0.27% | 20 | 14:20:38 |
| 51. | Mega Man 2 | 3,043 | 0.26% | 8 | 56:36 |
| 52. | Super Punch-Out!! | 3,032 | 0.26% | 7 | 9:55:27 |
| 53. | Super Mario 3D World | 2,982 | 0.25% | 20 | 6:14:27 |
| 54. | AM2R | 2,933 | 0.25% | 10 | 7:04:10 |
| 55. | Metroid II: Return of Samus | 2,796 | 0.24% | 12 | 7:54:48 |
| 56. | Gradius V | 2,589 | 0.22% | 8 | 1:38:08 |
| 57. | Star Fox 64 | 2,579 | 0.22% | 8 | 1:20:22 |
| 58. | Nemesis | 2,416 | 0.21% | 2 | 18:11 |
| 59. | Abobo's Big Adventure | 2,352 | 0.20% | 7 | 1:23:25 |
| 60. | Shadow Complex | 2,292 | 0.20% | 12 | 4:13:38 |
| 61. | The Chessmaster | 2,269 | 0.19% | 12 | 2:00:34 |
| 62. | The Simpsons Arcade | 2,232 | 0.19% | 3 | 40:35 |
| 63. | Metroid | 2,230 | 0.19% | 15 | 6:59:22 |
| 64. | Metroid Prime 2: Echoes | 2,187 | 0.19% | 54 | 18:11:46 |
| 65. | Metal Gear Solid 4: Guns of the Patriots | 2,066 | 0.18% | 39 | 12:48:21 |
| 66. | Castlevania III: Dracula's Curse | 2,017 | 0.17% | 7 | 1:20:57 |
| 67. | RYGAR | 1,969 | 0.17% | 9 | 1:21:07 |
| 68. | WWF Royal Rumble | 1,903 | 0.16% | 3 | 27:12 |
| 69. | The Last of Us | 1,899 | 0.16% | 51 | 16:15:25 |
| 70. | Super Mario Kart | 1,887 | 0.16% | 3 | 49:58 |
| 71. | Contra | 1,875 | 0.16% | 11 | 5:06:13 |
| 72. | The Legend of Zelda: Oracle of Ages | 1,842 | 0.16% | 44 | 40:13 |
| 73. | Castlevania: Symphony of the Night | 1,824 | 0.16% | 30 | 15:07:36 |
| 74. | Super Mario Bros. | 1,790 | 0.15% | 5 | 1:29:23 |
| 75. | Resident Evil: Deadly Silence | 1,778 | 0.15% | 16 | 5:21:42 |
| 76. | Metroid: Zero Mission | 1,753 | 0.15% | 11 | 6:36:14 |
| 77. | Street Fighter II | 1,632 | 0.14% | 2 | 32:20 |
| 78. | Castlevania | 1,628 | 0.14% | 9 | 1:35:57 |
| 79. | Chrono Trigger | 1,610 | 0.14% | 57 | 19:18:17 |
| 80. | Bloodstained: Ritual of the Night | 1,607 | 0.14% | 55 | 19:05:37 |
| 81. | Mortal Kombat II | 1,559 | 0.13% | 2 | 16:48 |
| 82. | Sweet Home | 1,547 | 0.13% | 14 | 4:31:11 |
| 83. | Shantae: Risky's Revenge | 1,494 | 0.13% | 8 | 2:36:33 |
| 84. | Micro Machines 2: Turbo Tournament | 1,463 | 0.13% | 2 | 20:02 |
| 85. | Dr. Mario | 1,422 | 0.12% | 4 | 38:10 |
| 86. | Death Stranding | 1,414 | 0.12% | 95 | 1:08:19:17 |
| 87. | Silent Hill 2 | 1,402 | 0.12% | 33 | 9:17:02 |
| 88. | Fatal Frame: Maiden of Black Water | 1,344 | 0.11% | 43 | 13:23:48 |
| 89. | Mega Man | 1,320 | 0.11% | 9 | 1:42:39 |
| 90. | Super Mario Advance 4: Super Mario Bros. 3 | 1,301 | 0.11% | 12 | 3:45:20 |
| 91. | Parasite Eve | 1,259 | 0.11% | 16 | 5:11:32 |
| 92. | Metal Gear Solid: Peace Walker | 1,253 | 0.11% | 66 | 1:01:11:23 |
| 93. | Metroid Dread | 1,235 | 0.11% | 20 | 7:12:41 |
| 94. | Contra III: The Alien Wars | 1,213 | 0.10% | 3 | 45:16 |
| 95. | Super Tennis | 1,174 | 0.10% | 3 | 38:00 |
| 96. | Mario Kart 64 | 1,156 | 0.10% | 1 | 9:38 |
| 97. | Mega Man 4 | 1,140 | 0.10% | 6 | 1:31:07 |
| 98. | Bucky O'Hare | 1,127 | 0.10% | 4 | 40:52 |
| 99. | Marvel's Spider-Man | 1,112 | 0.10% | 44 | 0:00 |
| 100. | NBA Jam | 1,106 | 0.09% | 2 | 21:16 |
