| 1. | Final Fantasy VI | 182,924 | 17.88% | 7 | 18:11 |
| 2. | Breath of Fire IV | 102,028 | 9.97% | 4 | 10:15 |
| 3. | Lufia II: Rise of the Sinistrals | 83,382 | 8.15% | 6 | 16:02 |
| 4. | Breath of Fire III | 68,452 | 6.69% | 4 | 8:23 |
| 5. | Bomberman 64: The Second Attack! | 34,315 | 3.35% | 6 | 19:06 |
| 6. | Chrono Trigger | 28,120 | 2.75% | 5 | 16:17 |
| 7. | Final Fantasy Crystal Chronicles | 27,990 | 2.74% | 6 | 25:58 |
| 8. | Super Mario Bros. 3 | 27,112 | 2.65% | 3 | 5:36 |
| 9. | Bahamut Lagoon | 23,702 | 2.32% | 3 | 5:46 |
| 10. | Donkey Kong 64 | 21,988 | 2.15% | 5 | 19:01 |
| 11. | Sword of Mana | 21,664 | 2.12% | 3 | 5:59 |
| 12. | Pokémon FireRed and LeafGreen | 20,210 | 1.97% | 3 | 6:46 |
| 13. | Treasure of the Rudras | 18,750 | 1.83% | 1 | 1:21 |
| 14. | Conker's Bad Fur Day | 16,417 | 1.60% | 6 | 25:52 |
| 15. | Legend of Mana | 15,909 | 1.55% | 7 | 19:30 |
| 16. | Tales of Destiny | 11,147 | 1.09% | 1 | 1:51 |
| 17. | SaGa Frontier 2 | 9,957 | 0.97% | 2 | 10:49 |
| 18. | Aidyn Chronicles: The First Mage | 8,195 | 0.80% | 5 | 19:02 |
| 19. | Super Mario Bros. 2 | 7,780 | 0.76% | 2 | 2:04 |
| 20. | Final Fantasy V | 7,503 | 0.73% | 6 | 18:20 |
| 21. | Rayman 2: The Great Escape | 7,406 | 0.72% | 4 | 14:05 |
| 22. | Final Fantasy Tactics Advance | 5,570 | 0.54% | 4 | 7:31 |
| 23. | WarioWare, Inc.: Mega Microgames! | 4,558 | 0.45% | 3 | 4:08 |
| 24. | Mario Power Tennis | 4,382 | 0.43% | 5 | 34:23 |
| 25. | Final Fantasy IX | 4,240 | 0.41% | 5 | 15:40 |
| 26. | Quest 64 | 4,214 | 0.41% | 6 | 16:17 |
| 27. | Kirby & the Amazing Mirror | 3,926 | 0.38% | 4 | 11:03 |
| 28. | Kirby 64: The Crystal Shards | 3,921 | 0.38% | 6 | 16:01 |
| 29. | Jet Force Gemini | 3,795 | 0.37% | 6 | 15:31 |
| 30. | Glover | 3,774 | 0.37% | 4 | 16:34 |
| 31. | Seiken Densetsu 3 | 3,649 | 0.36% | 3 | 10:51 |
| 32. | Phantasy Star Online | 2,983 | 0.29% | 4 | 14:47 |
| 33. | Super Mario All-Stars | 2,604 | 0.25% | 4 | 6:37 |
| 34. | The Legend of Dragoon | 2,533 | 0.25% | 5 | 7:51 |
| 35. | Romancing SaGa 3 | 2,227 | 0.22% | 2 | 5:31 |
| 36. | Digimon World 4 | 2,185 | 0.21% | 3 | 6:50 |
| 37. | Final Fantasy VIII | 2,169 | 0.21% | 7 | 27:37 |
| 38. | Final Fantasy | 2,024 | 0.20% | 1 | 2:17 |
| 39. | Kirby's Dream Land 3 | 1,997 | 0.20% | 5 | 11:11 |
| 40. | Mario Party 5 | 1,956 | 0.19% | 5 | 9:18 |
| 41. | Animal Crossing | 1,925 | 0.19% | 5 | 12:57 |
| 42. | Mario Party 4 | 1,914 | 0.19% | 4 | 12:07 |
| 43. | Mario Tennis | 1,862 | 0.18% | 4 | 10:24 |
| 44. | Super Mario World | 1,746 | 0.17% | 6 | 10:12 |
| 45. | Castlevania: Legacy of Darkness | 1,659 | 0.16% | 3 | 7:42 |
| 46. | Chocobo Racing | 1,626 | 0.16% | 3 | 5:49 |
| 47. | Paper Mario | 1,608 | 0.16% | 6 | 14:20 |
| 48. | Kirby Air Ride | 1,583 | 0.15% | 5 | 17:38 |
| 49. | Paper Mario: The Thousand-Year Door | 1,509 | 0.15% | 6 | 11:44 |
| 50. | Bomberman Hero | 1,487 | 0.15% | 4 | 8:29 |
| 51. | Amazing Island | 1,487 | 0.15% | 3 | 13:30 |
| 52. | Mario & Luigi: Superstar Saga | 1,404 | 0.14% | 5 | 9:32 |
| 53. | Bomberman 64 | 1,370 | 0.13% | 6 | 9:30 |
| 54. | Breath of Fire | 1,188 | 0.12% | 2 | 3:04 |
| 55. | The Legend of Zelda: Majora's Mask | 1,133 | 0.11% | 7 | 14:59 |
| 56. | Luigi's Mansion | 1,097 | 0.11% | 6 | 17:04 |
| 57. | Silent Hill | 1,090 | 0.11% | 5 | 11:46 |
| 58. | Snowboard Kids | 1,066 | 0.10% | 3 | 6:53 |
| 59. | The Legend of Zelda: A Link to the Past | 1,013 | 0.10% | 5 | 9:14 |
| 60. | Kirby Super Star | 986 | 0.10% | 6 | 11:56 |
| 61. | Mario Golf: Toadstool Tour | 962 | 0.09% | 4 | 21:33 |
| 62. | The Legend of Zelda: Four Swords Adventures | 960 | 0.09% | 6 | 45:23 |
| 63. | Breath of Fire II | 946 | 0.09% | 1 | 1:24 |
| 64. | Final Fantasy VII | 945 | 0.09% | 6 | 22:35 |
| 65. | Mario Kart: Double Dash!! | 928 | 0.09% | 5 | 26:23 |
| 66. | The Legend of Zelda: Ocarina of Time | 915 | 0.09% | 6 | 11:17 |
| 67. | Chameleon Twist | 902 | 0.09% | 3 | 5:16 |
| 68. | Super Mario Kart | 832 | 0.08% | 5 | 20:31 |
| 69. | Metroid Prime 2: Echoes | 828 | 0.08% | 1 | 5:06 |
| 70. | Earthbound | 817 | 0.08% | 5 | 12:04 |
| 71. | Valkyrie Profile | 812 | 0.08% | 3 | 4:55 |
| 72. | Mischief Makers | 767 | 0.07% | 3 | 10:04 |
| 73. | Perfect Dark | 746 | 0.07% | 2 | 3:07 |
| 74. | Yoshi's Story | 731 | 0.07% | 4 | 9:24 |
| 75. | The 7th Saga | 705 | 0.07% | 1 | 2:08 |
| 76. | Tales of Eternia | 691 | 0.07% | 1 | 1:33 |
| 77. | Sonic Battle | 674 | 0.07% | 3 | 10:08 |
| 78. | Super Mario RPG | 645 | 0.06% | 6 | 11:29 |
| 79. | Super Mario 64 | 622 | 0.06% | 6 | 16:17 |
| 80. | Star Fox | 619 | 0.06% | 2 | 4:19 |
| 81. | Mario Party 3 | 589 | 0.06% | 4 | 6:19 |
| 82. | Mario Golf | 582 | 0.06% | 3 | 12:08 |
| 83. | Super Smash Bros. | 575 | 0.06% | 4 | 8:41 |
| 84. | Golden Sun: The Lost Age | 567 | 0.06% | 4 | 9:34 |
| 85. | Donkey Kong Country 2 | 556 | 0.05% | 4 | 9:45 |
| 86. | The Legend of Zelda: Twilight Princess | 535 | 0.05% | 6 | 30:52 |
| 87. | Diddy Kong Racing | 512 | 0.05% | 6 | 17:28 |
| 88. | MediEvil | 506 | 0.05% | 3 | 6:33 |
| 89. | Metal Gear Solid | 462 | 0.05% | 4 | 12:08 |
| 90. | Star Fox 64 | 426 | 0.04% | 5 | 10:33 |
| 91. | Sonic Advance 2 | 415 | 0.04% | 2 | 4:30 |
| 92. | F-Zero GX | 412 | 0.04% | 6 | 20:12 |
| 93. | Mario Kart 64 | 408 | 0.04% | 4 | 19:02 |
| 94. | Banjo-Kazooie | 406 | 0.04% | 5 | 23:50 |
| 95. | Metroid Prime | 397 | 0.04% | 6 | 20:34 |
| 96. | Mario Party 2 | 381 | 0.04% | 4 | 7:07 |
| 97. | Donkey Kong Country 3 | 377 | 0.04% | 3 | 7:46 |
| 98. | Mario Party | 377 | 0.04% | 4 | 6:44 |
| 99. | Persona 2: Innocent Sin | 374 | 0.04% | 1 | 1:12 |
| 100. | Sonic Advance | 347 | 0.03% | 3 | 5:59 |
