| 1. | Super Smash Bros. Brawl | 1,213,925 | 7.17% | 2 | 1:08:40 |
| 2. | rFactor | 958,561 | 5.66% | 2 | 1:00:09 |
| 3. | Dragon Quest III: The Seeds of Salvation | 765,239 | 4.52% | 9 | 1:15:18:33 |
| 4. | Super Mario Bros. | 642,414 | 3.79% | 3 | 6:03:12 |
| 5. | Super Smash Bros. Melee | 641,471 | 3.79% | 2 | 2:38:26 |
| 6. | Donkey Kong Country 2 | 599,593 | 3.54% | 1 | 41:16 |
| 7. | Gokujo Parodius | 427,864 | 2.53% | 1 | 37:28 |
| 8. | Mario Party 2 | 364,821 | 2.15% | 1 | 41:35 |
| 9. | Dino Crisis | 343,664 | 2.03% | 2 | 7:36:43 |
| 10. | Jikkyou Powerful Pro Yakyuu 6 | 272,127 | 1.61% | 1 | 1:22:25 |
| 11. | NBA 2K9 | 235,073 | 1.39% | 3 | 6:03:47 |
| 12. | Power Pro Kun Pocket 13 | 161,274 | 0.95% | 1 | 3:31:09 |
| 13. | Power Pro Kun Pocket 3 | 149,257 | 0.88% | 1 | 1:48:57 |
| 14. | Power Pro Kun Pocket 5 | 120,275 | 0.71% | 1 | 1:27:27 |
| 15. | Story of Seasons | 71,873 | 0.42% | 2 | 11:53:04 |
| 16. | Terranigma | 31,683 | 0.19% | 1 | 2:36:33 |
| 17. | Dragon Ball Z: Super Butōden | 24,709 | 0.15% | 3 | 5:57:22 |
| 18. | Famicom Jump: Hero Retsuden | 24,132 | 0.14% | 3 | 11:03:36 |
| 19. | Metal Saga | 23,336 | 0.14% | 1 | 5:59:58 |
| 20. | Akuma-kun: Makai no Wana | 23,266 | 0.14% | 1 | 3:36:51 |
| 21. | NBA 2K13 | 19,890 | 0.12% | 1 | 1:59:21 |
| 22. | Lupin III: Lupin Is Dead, Zenigata Is in Love | 19,068 | 0.11% | 1 | 4:29:39 |
| 23. | The Final Fantasy Legend | 17,832 | 0.11% | 2 | 7:33:56 |
| 24. | BioShock | 12,860 | 0.08% | 1 | 4:15:56 |
| 25. | Atelier Sophie: The Alchemist of the Mysterious Book | 12,407 | 0.07% | 1 | 1:45:42 |
| 26. | Square's Tom Sawyer | 9,845 | 0.06% | 2 | 5:50:12 |
| 27. | Final Fantasy Tactics | 9,364 | 0.06% | 2 | 8:55:08 |
| 28. | Dead Rising | 8,812 | 0.05% | 1 | 5:09:41 |
| 29. | Doraemon 3: Makai no Dungeon | 7,376 | 0.04% | 1 | 5:58:06 |
| 30. | Sonic Unleashed | 7,315 | 0.04% | 1 | 2:04:06 |
| 31. | Dragon Quest | 6,379 | 0.04% | 11 | 1:16:01:16 |
| 32. | The Legend of Zelda: A Link to the Past | 6,293 | 0.04% | 19 | 2:14:39:00 |
| 33. | Kamaitachi no Yoru | 5,882 | 0.03% | 2 | 8:02:33 |
| 34. | Final Fantasy V | 4,956 | 0.03% | 17 | 2:14:10:39 |
| 35. | Shinobi | 4,579 | 0.03% | 1 | 51:32 |
| 36. | I Am Setsuna | 4,491 | 0.03% | 1 | 2:53:26 |
| 37. | Ib | 4,413 | 0.03% | 6 | 1:07:22:55 |
| 38. | Elvandia Story | 4,295 | 0.03% | 1 | 1:24:58 |
| 39. | Densetsu no Stafy 4 | 4,109 | 0.02% | 1 | 5:59:58 |
| 40. | Final Fantasy Crystal Chronicles | 4,006 | 0.02% | 1 | 54:29 |
| 41. | Dead Space | 3,939 | 0.02% | 1 | 5:59:58 |
| 42. | Dragon Ball Z: Budokai 3 | 3,897 | 0.02% | 1 | 33:56 |
| 43. | Chrono Trigger | 3,695 | 0.02% | 6 | 1:07:51:41 |
| 44. | Dead Space 3 | 3,607 | 0.02% | 1 | 2:23:54 |
| 45. | Super Mario RPG | 3,382 | 0.02% | 5 | 17:39:02 |
| 46. | Fire Emblem: Genealogy of the Holy War | 2,934 | 0.02% | 4 | 17:11:40 |
| 47. | Hermie Hopperhead: Scrap Panic | 2,702 | 0.02% | 1 | 5:02:11 |
| 48. | Gallop Racer 3 | 2,693 | 0.02% | 1 | 41:47 |
| 49. | Silent Hill: Origins | 2,663 | 0.02% | 1 | 5:53:36 |
| 50. | Penny Racers | 2,615 | 0.02% | 1 | 3:33:54 |
| 51. | Treasure Hunter G | 2,595 | 0.02% | 1 | 4:36:24 |
| 52. | Metal Gear Solid: Peace Walker | 2,591 | 0.02% | 2 | 7:50:16 |
| 53. | Uncharted 4: A Thief's End | 2,587 | 0.02% | 3 | 15:49:39 |
| 54. | Dragon Ball Z III: Ressen Jinzou Ningen | 2,566 | 0.02% | 1 | 1:59:42 |
| 55. | Pac-Attack | 2,404 | 0.01% | 7 | 9:47:49 |
| 56. | God of War III | 2,398 | 0.01% | 1 | 5:59:59 |
| 57. | Romancing SaGa | 2,215 | 0.01% | 4 | 21:10:16 |
| 58. | Itoi Shigesato no Bass Tsuri No. 1 | 2,157 | 0.01% | 1 | 3:39:40 |
| 59. | Kidou Senshi Z Gundam: Away to the NewType | 2,156 | 0.01% | 1 | 3:05:10 |
| 60. | Dragon Ball Z Side Story: Plan to Eradicate the Saiyans | 2,023 | 0.01% | 1 | 1:43:53 |
| 61. | Ys I: Ancient Ys Vanished | 1,924 | 0.01% | 1 | 5:59:58 |
| 62. | Adventure Island | 1,905 | 0.01% | 3 | 3:41:49 |
| 63. | Hanjuku Hero | 1,896 | 0.01% | 1 | 20:46 |
| 64. | Mega Man | 1,869 | 0.01% | 3 | 4:35:44 |
| 65. | Jikkyou Powerful Pro Yakyuu 2009 | 1,788 | 0.01% | 1 | 5:06:54 |
| 66. | Romancing SaGa 3 | 1,680 | 0.01% | 6 | 23:14:19 |
| 67. | Wai Wai World | 1,608 | 0.01% | 1 | 2:34:20 |
| 68. | Punch-Out!! | 1,601 | 0.01% | 2 | 1:39:17 |
| 69. | Onimusha: Dawn of Dreams | 1,573 | 0.01% | 1 | 3:07:27 |
| 70. | Dragon Quest VI: Realms of Revelation | 1,549 | 0.01% | 6 | 1:10:04:17 |
| 71. | Pokémon Red and Blue | 1,504 | 0.01% | 6 | 18:41:38 |
| 72. | Dragon Quest II: Luminaries of the Legendary Line | 1,466 | 0.01% | 4 | 5:59:58 |
| 73. | Doraemon 2: Nobita no Toys Land Daibouken | 1,431 | 0.01% | 1 | 2:15:44 |
| 74. | Xardion | 1,414 | 0.01% | 1 | 1:02:29 |
| 75. | Dragon Quest Monsters | 1,398 | 0.01% | 4 | 20:15:24 |
| 76. | Wario Land 4 | 1,394 | 0.01% | 1 | 24:34 |
| 77. | Donkey Kong '94 | 1,386 | 0.01% | 2 | 6:07:11 |
| 78. | Disney's Pinocchio | 1,380 | 0.01% | 1 | 35:08 |
| 79. | Tales of Phantasia | 1,364 | 0.01% | 3 | 12:39:47 |
| 80. | Jurassic Park: Operation Genesis | 1,363 | 0.01% | 1 | 3:50:45 |
| 81. | The Legend of Zelda | 1,343 | 0.01% | 7 | 19:09:37 |
| 82. | Fatal Fury 2 | 1,335 | 0.01% | 2 | 9:38:26 |
| 83. | Transformers: Mystery of Convoy | 1,319 | 0.01% | 2 | 2:34:50 |
| 84. | Kirby's Dream Land 2 | 1,313 | 0.01% | 2 | 6:52:19 |
| 85. | Red Dead Revolver | 1,312 | 0.01% | 1 | 1:56:05 |
| 86. | Tokimeki Memorial | 1,305 | 0.01% | 2 | 11:48:59 |
| 87. | Chocobo Land: A Game of Dice | 1,301 | 0.01% | 2 | 11:45:33 |
| 88. | Pingus | 1,289 | 0.01% | 1 | 3:42:31 |
| 89. | Romancing SaGa 2 | 1,271 | 0.01% | 4 | 18:07:03 |
| 90. | Diddy Kong Racing | 1,271 | 0.01% | 2 | 7:04:02 |
| 91. | Super Mario 64 | 1,245 | 0.01% | 2 | 2:36:15 |
| 92. | The Neverhood | 1,239 | 0.01% | 2 | 7:15:02 |
| 93. | Indiana Jones' Greatest Adventures | 1,197 | 0.01% | 1 | 2:22:57 |
| 94. | Tenchu: Wrath of Heaven | 1,180 | 0.01% | 2 | 5:29:24 |
| 95. | Tales of Destiny | 1,179 | 0.01% | 3 | 16:43:12 |
| 96. | Barcode World | 1,166 | 0.01% | 2 | 11:36:12 |
| 97. | Dark Souls | 1,156 | 0.01% | 3 | 12:25:56 |
| 98. | Doom 64 | 1,151 | 0.01% | 1 | 5:43:44 |
| 99. | Mystic Ark | 1,146 | 0.01% | 3 | 15:23:22 |
| 100. | Kirby's Adventure | 1,145 | 0.01% | 2 | 4:46:19 |
