| 1. | Dragon Quest IV: Chapters of the Chosen | 3,366,835 | 15.52% | 1,135 | 17:21:10:33 |
| 2. | Captain Tsubasa Vol. II: Super Striker | 450,629 | 2.08% | 170 | 2:17:45:12 |
| 3. | Yie Ar Kung-Fu | 322,508 | 1.49% | 5 | 1:54:55 |
| 4. | Fire Emblem Awakening | 251,814 | 1.16% | 60 | 1:07:01:23 |
| 5. | Super Famicom Wars | 190,836 | 0.88% | 136 | 2:19:56:27 |
| 6. | Dragon Quest V: Hand of the Heavenly Bride | 174,421 | 0.80% | 78 | 1:05:22:00 |
| 7. | Nobunaga's Ambition II | 171,927 | 0.79% | 57 | 1:00:56:09 |
| 8. | King of Kings | 171,885 | 0.79% | 140 | 3:09:34:45 |
| 9. | Dragon Quest III: The Seeds of Salvation | 166,794 | 0.77% | 117 | 2:17:23:21 |
| 10. | Super Batter Up | 152,812 | 0.70% | 52 | 21:56:10 |
| 11. | Final Fantasy III | 150,927 | 0.70% | 32 | 13:15:18 |
| 12. | Bases Loaded | 146,507 | 0.68% | 14 | 5:10:06 |
| 13. | Advance Wars: Dual Strike | 132,137 | 0.61% | 47 | 19:53:09 |
| 14. | Lupin the 3rd: Treasure of the Sorcerer King | 131,297 | 0.61% | 23 | 9:29:43 |
| 15. | Dragon Ball Z: Budokai 3 | 128,518 | 0.59% | 21 | 5:20:34 |
| 16. | Nobunaga's Ambition: Lord of Darkness | 125,895 | 0.58% | 71 | 1:07:18:26 |
| 17. | Momotaro Dentetsu: Showa, Heisei, Reiwa mo Teiban! | 118,850 | 0.55% | 158 | 3:03:04:54 |
| 18. | Dragon Quest XI | 116,440 | 0.54% | 92 | 1:23:19:30 |
| 19. | 1-2-Switch | 112,302 | 0.52% | 60 | 1:17:59:15 |
| 20. | Romance of the Three Kingdoms | 111,630 | 0.51% | 13 | 5:16:50 |
| 21. | Dragon Quest II: Luminaries of the Legendary Line | 111,538 | 0.51% | 142 | 1:16:48:19 |
| 22. | The Legend of the Quiz Tournament of Champions | 110,979 | 0.51% | 32 | 5:43:58 |
| 23. | Final Fantasy VI | 105,944 | 0.49% | 59 | 20:59:43 |
| 24. | FIFA 20 | 103,921 | 0.48% | 14 | 10:00:36 |
| 25. | Super Mario Bros. | 102,176 | 0.47% | 29 | 10:29:04 |
| 26. | Romance of the Three Kingdoms II | 94,562 | 0.44% | 63 | 1:00:02:36 |
| 27. | Dragon Quest VI: Realms of Revelation | 91,374 | 0.42% | 54 | 2:18:00:28 |
| 28. | Fire Emblem: Mystery of the Emblem | 90,257 | 0.42% | 37 | 19:20:44 |
| 29. | Baseball | 88,749 | 0.41% | 33 | 11:32:59 |
| 30. | Famista 64 | 87,982 | 0.41% | 36 | 16:28:16 |
| 31. | Dragon Buster | 86,390 | 0.40% | 12 | 7:42:40 |
| 32. | Raid on Bungeling Bay | 85,586 | 0.39% | 3 | 1:03:04 |
| 33. | The Legend of Zelda | 81,983 | 0.38% | 23 | 7:11:34 |
| 34. | Famicom Wars | 81,938 | 0.38% | 88 | 2:03:47:21 |
| 35. | Dragon Quest | 79,208 | 0.37% | 178 | 1:15:08:55 |
| 36. | Family Circuit | 77,820 | 0.36% | 59 | 5:14:06 |
| 37. | Jaseiken Necromancer | 73,173 | 0.34% | 57 | 1:05:52:04 |
| 38. | The Legend of Zelda: A Link to the Past | 67,829 | 0.31% | 24 | 11:34:49 |
| 39. | Super Soccer | 65,608 | 0.30% | 36 | 9:53:36 |
| 40. | J. League Soccer Prime Goal | 63,344 | 0.29% | 22 | 4:32:13 |
| 41. | Torneko: The Last Hope | 58,739 | 0.27% | 52 | 1:22:11:20 |
| 42. | Yokai Dochuki | 58,231 | 0.27% | 2 | 51:23 |
| 43. | Dragon Ball 3: Gokuden | 57,422 | 0.26% | 19 | 6:49:30 |
| 44. | Adventure Island | 56,740 | 0.26% | 8 | 8:01:30 |
| 45. | Dragon Ball Z II: Gekishin Freeza!! | 54,430 | 0.25% | 24 | 7:25:00 |
| 46. | Final Fantasy IX | 54,136 | 0.25% | 64 | 1:07:08:05 |
| 47. | Super Mario Bros. 3 | 53,965 | 0.25% | 13 | 13:09:32 |
| 48. | Dragon Ball Z: Super Saiya Densetsu | 51,614 | 0.24% | 24 | 8:25:30 |
| 49. | Wrecking Crew | 50,181 | 0.23% | 37 | 14:52:36 |
| 50. | Doraemon | 48,032 | 0.22% | 5 | 1:08:57 |
| 51. | Final Fantasy Tactics | 46,964 | 0.22% | 48 | 20:51:24 |
| 52. | Bakushou!! Jinsei Gekijou | 46,622 | 0.21% | 6 | 3:02:45 |
| 53. | Famicom Jump: Hero Retsuden | 46,088 | 0.21% | 13 | 4:35:47 |
| 54. | Fire Emblem: The Binding Blade | 45,787 | 0.21% | 83 | 1:18:57:24 |
| 55. | Pooyan | 45,626 | 0.21% | 5 | 5:06:44 |
| 56. | Rupan Sansei: Columbus no Isan wa Ake ni Somaru | 44,270 | 0.20% | 11 | 4:58:38 |
| 57. | Fire Emblem: Shadow Dragon and the Blade of Light | 43,464 | 0.20% | 29 | 22:29:18 |
| 58. | Romance of the Three Kingdoms VI | 42,882 | 0.20% | 37 | 1:13:28:17 |
| 59. | Shining Force | 41,449 | 0.19% | 55 | 1:04:30:05 |
| 60. | Super Mahjong Taikai | 40,445 | 0.19% | 35 | 13:57:00 |
| 61. | Super Mario Maker 2 | 40,369 | 0.19% | 53 | 1:18:50:33 |
| 62. | 2nd Super Robot Wars | 40,345 | 0.19% | 2 | 52:34 |
| 63. | Super Mario World | 40,328 | 0.19% | 9 | 3:29:38 |
| 64. | The Legend of the Mystical Ninja | 39,391 | 0.18% | 12 | 3:44:42 |
| 65. | Solomon's Key | 39,322 | 0.18% | 35 | 14:36:38 |
| 66. | Captain Tsubasa | 38,146 | 0.18% | 32 | 10:25:38 |
| 67. | Jikkyou Powerful Pro Yakyuu 4 | 37,595 | 0.17% | 16 | 7:39:45 |
| 68. | Zelda II: The Adventure of Link | 35,523 | 0.16% | 17 | 4:58:01 |
| 69. | Ninja Hattori-kun | 34,889 | 0.16% | 2 | 34:55 |
| 70. | Romance of the Three Kingdoms III | 34,598 | 0.16% | 4 | 1:30:42 |
| 71. | Mario Bros. | 34,257 | 0.16% | 10 | 12:29:55 |
| 72. | Mega Man | 34,182 | 0.16% | 18 | 12:51:44 |
| 73. | The Portopia Serial Murder Case | 33,692 | 0.16% | 4 | 2:39:14 |
| 74. | Tag Team Match: M.U.S.C.L.E. | 33,440 | 0.15% | 3 | 50:35 |
| 75. | Final Fantasy | 32,296 | 0.15% | 61 | 22:38:21 |
| 76. | J.B. Harold Murder Club | 31,952 | 0.15% | 13 | 4:48:44 |
| 77. | The Goonies | 31,823 | 0.15% | 4 | 1:56:03 |
| 78. | R.B.I. Baseball | 31,581 | 0.15% | 1 | 14:55 |
| 79. | Secret of Mana | 31,562 | 0.15% | 20 | 7:58:27 |
| 80. | Game Boy Wars | 30,443 | 0.14% | 57 | 0:00 |
| 81. | The Tower of Druaga | 30,005 | 0.14% | 22 | 9:35:58 |
| 82. | Victorious Boxers 2: Fighting Spirit | 29,804 | 0.14% | 17 | 3:41:17 |
| 83. | F-Zero | 28,983 | 0.13% | 7 | 5:17:17 |
| 84. | Last Window: The Secret of Cape West | 28,739 | 0.13% | 22 | 9:45:29 |
| 85. | Shin Onigashima | 28,195 | 0.13% | 12 | 3:37:45 |
| 86. | Landstalker | 27,488 | 0.13% | 51 | 1:02:54:03 |
| 87. | Lode Runner | 26,420 | 0.12% | 29 | 7:47:08 |
| 88. | Super Mario RPG | 26,029 | 0.12% | 31 | 12:37:54 |
| 89. | Bomberman | 25,887 | 0.12% | 5 | 2:30:41 |
| 90. | Dragon Ball Z: Kyoushuu! Saiyajin | 25,698 | 0.12% | 11 | 3:44:55 |
| 91. | Milon's Secret Castle | 25,013 | 0.12% | 7 | 5:29:07 |
| 92. | F1 Race | 24,141 | 0.11% | 6 | 1:33:28 |
| 93. | Military Madness | 24,134 | 0.11% | 59 | 1:05:26:04 |
| 94. | Ring King | 23,954 | 0.11% | 8 | 4:08:02 |
| 95. | Super Ghouls 'n Ghosts | 23,560 | 0.11% | 7 | 2:39:15 |
| 96. | Fist of the North Star | 23,312 | 0.11% | 5 | 1:14:36 |
| 97. | Shin 4-Jin Uchi Mahjong: Yakuman Tengoku | 22,753 | 0.10% | 24 | 9:56:23 |
| 98. | Phantasy Star IV | 22,742 | 0.10% | 41 | 21:08:30 |
| 99. | Pro Evolution Soccer 2010 | 22,519 | 0.10% | 61 | 1:06:29:53 |
| 100. | SonSon | 22,411 | 0.10% | 4 | 3:35:46 |
