| 1. | Pokémon Emerald | 456,178 | 4.20% | 1 | 3:07:14 |
| 2. | Sorcerian | 298,331 | 2.75% | 25 | 1:05:16:53 |
| 3. | Donkey Kong Country | 286,623 | 2.64% | 2 | 1:06:46 |
| 4. | Street Fighter II | 283,939 | 2.62% | 12 | 11:47:04 |
| 5. | Donkey Kong Country 2 | 257,677 | 2.38% | 1 | 2:10:28 |
| 6. | Valkyrie Profile | 167,204 | 1.54% | 1 | 3:36:32 |
| 7. | Daytona USA | 136,814 | 1.26% | 1 | 40:58 |
| 8. | Puyo Puyo | 132,271 | 1.22% | 16 | 5:36:09 |
| 9. | Donkey Kong Country 3 | 124,471 | 1.15% | 1 | 1:43:43 |
| 10. | Space Harrier | 121,267 | 1.12% | 7 | 2:59:14 |
| 11. | The Tower of Druaga | 111,198 | 1.02% | 4 | 32:08 |
| 12. | ActRaiser | 109,836 | 1.01% | 1 | 48:43 |
| 13. | SimCity | 104,541 | 0.96% | 1 | 48:18 |
| 14. | Super Mario Kart | 98,718 | 0.91% | 1 | 54:20 |
| 15. | Mega Man 4 | 97,840 | 0.90% | 1 | 30:20 |
| 16. | Kirby: Squeak Squad | 94,253 | 0.87% | 1 | 58:15 |
| 17. | YU-NO: A girl who chants love at the bound of this world | 93,709 | 0.86% | 2 | 9:38:19 |
| 18. | Kirby's Dream Land | 92,003 | 0.85% | 1 | 19:06 |
| 19. | Pokémon FireRed and LeafGreen | 91,081 | 0.84% | 1 | 1:38:29 |
| 20. | Super Mario Land | 90,043 | 0.83% | 1 | 15:32 |
| 21. | Life Force | 85,428 | 0.79% | 3 | 46:44 |
| 22. | The Legend of the Mystical Ninja | 84,542 | 0.78% | 1 | 1:07:53 |
| 23. | The Legend of Zelda: Link's Awakening | 78,175 | 0.72% | 1 | 3:02:35 |
| 24. | Mega Man 5 | 77,957 | 0.72% | 1 | 30:39 |
| 25. | Tokimeki Memorial: Forever With You | 69,753 | 0.64% | 1 | 3:18:33 |
| 26. | Kirby Super Star Ultra | 64,698 | 0.60% | 1 | 2:03:41 |
| 27. | Super Mario Land 2: 6 Golden Coins | 64,099 | 0.59% | 1 | 34:49 |
| 28. | Street Fighter IV | 60,610 | 0.56% | 3 | 3:20:39 |
| 29. | Super Hang-On | 59,061 | 0.54% | 3 | 1:21:51 |
| 30. | Dragon Slayer: The Legend of Heroes | 58,676 | 0.54% | 8 | 8:44:46 |
| 31. | Ys III: Wanderers from Ys | 55,346 | 0.51% | 8 | 9:43:38 |
| 32. | Gradius III | 55,274 | 0.51% | 3 | 1:48:55 |
| 33. | Nemesis | 53,755 | 0.50% | 4 | 1:14:48 |
| 34. | Romance of the Three Kingdoms II | 49,296 | 0.45% | 5 | 2:25:09 |
| 35. | Out Run | 46,904 | 0.43% | 3 | 1:47:15 |
| 36. | Donkey Kong Land | 46,604 | 0.43% | 1 | 1:14:15 |
| 37. | Terranigma | 45,213 | 0.42% | 1 | 2:08:37 |
| 38. | Star Cruiser | 44,286 | 0.41% | 8 | 9:12:50 |
| 39. | Kirby's Dream Land 2 | 44,080 | 0.41% | 1 | 35:36 |
| 40. | Super Mario Bros. 2 | 42,117 | 0.39% | 1 | 19:15 |
| 41. | Kirby: Nightmare in Dream Land | 40,637 | 0.37% | 1 | 49:56 |
| 42. | Ghosts 'n Goblins | 40,634 | 0.37% | 2 | 41:52 |
| 43. | Thunder Force V | 38,823 | 0.36% | 1 | 1:08:51 |
| 44. | Dragon Slayer: The Legend of Heroes II | 38,059 | 0.35% | 5 | 7:56:42 |
| 45. | Kidou Senshi Gundam F91: Formula Senki 0122 | 37,567 | 0.35% | 1 | 32:36 |
| 46. | Mega Man X | 37,121 | 0.34% | 1 | 40:57 |
| 47. | U.N. Squadron | 36,804 | 0.34% | 2 | 1:16:03 |
| 48. | Tetris | 36,362 | 0.34% | 7 | 2:22:32 |
| 49. | Mega Man 2 | 35,117 | 0.32% | 1 | 34:21 |
| 50. | Legacy of the Wizard | 35,061 | 0.32% | 1 | 22:09 |
| 51. | Hydlide 3: The Space Memories | 34,759 | 0.32% | 8 | 6:02:07 |
| 52. | Transformers: Mystery of Convoy | 34,521 | 0.32% | 1 | 4:59 |
| 53. | Thunder Force III | 33,763 | 0.31% | 3 | 2:05:44 |
| 54. | Mega Man 3 | 33,427 | 0.31% | 1 | 42:47 |
| 55. | Metal Max 2 | 32,914 | 0.30% | 1 | 1:12:33 |
| 56. | R4: Ridge Racer Type 4 | 32,889 | 0.30% | 1 | 2:06:33 |
| 57. | Nobunaga's Ambition | 32,756 | 0.30% | 3 | 4:04 |
| 58. | Madou Monogatari | 32,571 | 0.30% | 3 | 3:00:37 |
| 59. | Thunder Force II | 30,514 | 0.28% | 4 | 2:13:28 |
| 60. | Xanadu | 29,961 | 0.28% | 4 | 2:36:50 |
| 61. | Nobunaga's Ambition II | 29,428 | 0.27% | 5 | 1:04:40 |
| 62. | Puyo Puyo 2 | 29,085 | 0.27% | 2 | 47:32 |
| 63. | Romance of the Three Kingdoms III | 29,078 | 0.27% | 2 | 2:01:45 |
| 64. | Ridge Racer 2 | 29,024 | 0.27% | 1 | 1:02:18 |
| 65. | Dragon Quest III: The Seeds of Salvation | 28,884 | 0.27% | 1 | 2:14:58 |
| 66. | Mega Man X2 | 28,582 | 0.26% | 1 | 1:06:21 |
| 67. | Rave Racer | 28,127 | 0.26% | 1 | 1:16:00 |
| 68. | Final Fight | 27,839 | 0.26% | 3 | 1:21:40 |
| 69. | Street Fighter V | 27,758 | 0.26% | 3 | 2:27:27 |
| 70. | Super Castlevania IV | 27,508 | 0.25% | 1 | 1:10:16 |
| 71. | Fantasy Zone | 26,974 | 0.25% | 7 | 2:33:15 |
| 72. | Snatcher | 26,512 | 0.24% | 3 | 4:20:14 |
| 73. | Last Armageddon | 25,931 | 0.24% | 4 | 6:46:09 |
| 74. | Mega Man 6 | 25,599 | 0.24% | 1 | 34:59 |
| 75. | Power DoLLS: Detachment of Limited Line Service | 25,591 | 0.24% | 4 | 2:34:17 |
| 76. | Yoshi's Story | 25,260 | 0.23% | 1 | 1:32:13 |
| 77. | Galaxy Force II | 25,219 | 0.23% | 3 | 1:23:26 |
| 78. | Vulcan Venture | 25,172 | 0.23% | 2 | 1:13:41 |
| 79. | Metal Gear 2: Solid Snake | 25,088 | 0.23% | 1 | 1:37:38 |
| 80. | Darkstalkers 3 | 24,992 | 0.23% | 1 | 1:38:06 |
| 81. | Mega Man | 24,725 | 0.23% | 1 | 31:20 |
| 82. | Salamander 2 | 24,415 | 0.23% | 1 | 51:15 |
| 83. | Gdleen | 24,258 | 0.22% | 1 | 34:22 |
| 84. | Night Warriors: Darkstalkers' Revenge | 24,168 | 0.22% | 1 | 1:11:56 |
| 85. | Super Daisenryaku | 23,842 | 0.22% | 1 | 29:31 |
| 86. | Dragon Spirit | 23,550 | 0.22% | 2 | 1:46:12 |
| 87. | P.T.O. | 23,062 | 0.21% | 2 | 1:37:48 |
| 88. | JoJo's Bizarre Adventure | 22,599 | 0.21% | 1 | 27:34 |
| 89. | Mega Man X3 | 22,403 | 0.21% | 1 | 1:17:27 |
| 90. | Wizardry: Proving Grounds of the Mad Overlord | 22,049 | 0.20% | 3 | 3:04:02 |
| 91. | Gradius IV | 21,462 | 0.20% | 1 | 49:51 |
| 92. | Uncharted Waters | 21,238 | 0.20% | 2 | 1:40:31 |
| 93. | Nemesis 3: The Eve of Destruction | 20,773 | 0.19% | 1 | 35:47 |
| 94. | Turbo Outrun | 20,646 | 0.19% | 3 | 1:01:44 |
| 95. | Dark Castle | 20,612 | 0.19% | 1 | 1:04:14 |
| 96. | Ys II: Ancient Ys Vanished - The Final Chapter | 20,611 | 0.19% | 5 | 4:40:10 |
| 97. | Wizardry II: The Knight of Diamonds | 20,269 | 0.19% | 1 | 23:20 |
| 98. | Pokémon Red and Blue | 20,172 | 0.19% | 1 | 1:49:41 |
| 99. | The King of Fighters '95 | 20,131 | 0.19% | 3 | 2:09:51 |
| 100. | Ganbare Goemon 2 | 20,129 | 0.19% | 1 | 24:50 |
