| 1. | Dragon Quest III: The Seeds of Salvation | 4,233,993 | 16.50% | 137 | 9:02:35:53 |
| 2. | Dragon Quest Monsters | 1,463,989 | 5.71% | 40 | 3:00:36:34 |
| 3. | Dragon Quest V: Hand of the Heavenly Bride | 1,303,351 | 5.08% | 89 | 7:15:55:37 |
| 4. | Dragon Quest IV: Chapters of the Chosen | 873,046 | 3.40% | 63 | 6:01:37:14 |
| 5. | Dragon Quest VI: Realms of Revelation | 668,808 | 2.61% | 59 | 4:01:21:37 |
| 6. | Final Fantasy Legend II | 640,475 | 2.50% | 18 | 1:07:26:22 |
| 7. | Dragon Quest VII: Fragments of the Forgotten Past | 606,466 | 2.36% | 31 | 3:05:53:01 |
| 8. | Final Fantasy III | 600,452 | 2.34% | 30 | 2:21:41:54 |
| 9. | Dragon Quest II: Luminaries of the Legendary Line | 588,222 | 2.29% | 43 | 3:06:23:01 |
| 10. | Chrono Trigger | 530,854 | 2.07% | 24 | 3:13:59:45 |
| 11. | Pokémon Red and Blue | 527,088 | 2.05% | 61 | 5:08:49:19 |
| 12. | Earthbound | 439,058 | 1.71% | 23 | 1:06:51:16 |
| 13. | Wario Land: Super Mario Land 3 | 428,798 | 1.67% | 3 | 3:08:08 |
| 14. | Dragon Quest Monsters: Joker | 402,847 | 1.57% | 2 | 4:47:58 |
| 15. | The Legend of Zelda: A Link to the Past | 384,163 | 1.50% | 4 | 1:57:43 |
| 16. | Final Fantasy V | 279,642 | 1.09% | 55 | 3:21:40:59 |
| 17. | Super Mario RPG | 269,341 | 1.05% | 37 | 3:04:44:45 |
| 18. | Pokémon Yellow | 267,135 | 1.04% | 10 | 15:30:04 |
| 19. | Dragon Quest Monsters 2 | 262,155 | 1.02% | 9 | 15:23:22 |
| 20. | Dragon Quest VIII: The Journey of the Cursed King | 258,409 | 1.01% | 59 | 5:19:29:05 |
| 21. | Dragon Quest IX: Sentinels of the Starry Skies | 204,465 | 0.80% | 4 | 15:10:15 |
| 22. | Resident Evil 2 | 201,256 | 0.78% | 4 | 7:32:46 |
| 23. | Mother 1+2 | 200,865 | 0.78% | 2 | 3:23:35 |
| 24. | Final Fantasy VII | 182,012 | 0.71% | 19 | 1:14:21:17 |
| 25. | Pokémon Ranger: Shadows of Almia | 179,439 | 0.70% | 2 | 12:22:07 |
| 26. | Wario Land 3 | 167,671 | 0.65% | 5 | 4:06:23 |
| 27. | Final Fantasy IV | 158,074 | 0.62% | 26 | 2:15:13:30 |
| 28. | 4th Super Robot Wars | 148,737 | 0.58% | 3 | 20:31:54 |
| 29. | Etrian Odyssey Nexus | 118,964 | 0.46% | 4 | 14:21:24 |
| 30. | The Legend of Zelda: Link's Awakening | 107,415 | 0.42% | 3 | 3:19:13 |
| 31. | Dragon Quest | 106,377 | 0.41% | 27 | 1:06:52:10 |
| 32. | Kirby Super Star | 101,615 | 0.40% | 15 | 13:09:33 |
| 33. | Pokémon FireRed and LeafGreen | 83,801 | 0.33% | 37 | 2:13:33:55 |
| 34. | Clock Tower | 80,940 | 0.32% | 2 | 1:17:57 |
| 35. | Shin Megami Tensei II | 71,572 | 0.28% | 2 | 6:34:42 |
| 36. | Front Mission | 68,191 | 0.27% | 2 | 3:40:53 |
| 37. | Terranigma | 67,374 | 0.26% | 4 | 17:04:43 |
| 38. | Yoshi's Island | 66,125 | 0.26% | 2 | 4:36:00 |
| 39. | Illusion of Gaia | 63,686 | 0.25% | 2 | 6:32:18 |
| 40. | Ogre Battle: The March of the Black Queen | 59,377 | 0.23% | 7 | 17:20:07 |
| 41. | Final Fantasy VIII | 58,654 | 0.23% | 4 | 8:15:25 |
| 42. | Resident Evil 7 | 56,856 | 0.22% | 3 | 5:21:17 |
| 43. | Custom Robo Arena | 56,625 | 0.22% | 2 | 6:40:53 |
| 44. | Final Fantasy | 53,224 | 0.21% | 5 | 12:07:02 |
| 45. | Pokémon Crystal | 51,654 | 0.20% | 5 | 11:22:26 |
| 46. | The Legend of Zelda: Breath of the Wild | 49,052 | 0.19% | 7 | 12:53:31 |
| 47. | Undertale | 48,835 | 0.19% | 5 | 4:36:01 |
| 48. | Mario Kart 64 | 47,381 | 0.18% | 1 | 52:58 |
| 49. | P.T. | 44,722 | 0.17% | 3 | 1:04:00 |
| 50. | Clock Tower | 43,290 | 0.17% | 2 | 2:11:04 |
| 51. | Etrian Odyssey 2 Untold: The Fafnir Knight | 42,166 | 0.16% | 1 | 2:47:48 |
| 52. | Final Fantasy VI | 41,793 | 0.16% | 22 | 2:01:17:08 |
| 53. | Super Mario Odyssey | 37,818 | 0.15% | 1 | 1:35:26 |
| 54. | Donkey Kong Country 2 | 37,598 | 0.15% | 4 | 3:00:44 |
| 55. | Romancing SaGa 2 | 35,768 | 0.14% | 9 | 16:49:04 |
| 56. | Bomberman 64 | 35,614 | 0.14% | 6 | 8:56:08 |
| 57. | Pokémon Platinum | 34,685 | 0.14% | 8 | 11:42:49 |
| 58. | Pokémon Ruby and Sapphire | 33,034 | 0.13% | 13 | 16:19:10 |
| 59. | Etrian Odyssey III | 32,466 | 0.13% | 2 | 3:52:19 |
| 60. | Bully | 32,072 | 0.13% | 2 | 7:00:37 |
| 61. | E.V.O.: Search for Eden | 31,148 | 0.12% | 5 | 10:18:53 |
| 62. | Soul Blazer | 31,025 | 0.12% | 1 | 1:49:26 |
| 63. | Final Fantasy II | 30,260 | 0.12% | 9 | 17:30:39 |
| 64. | Dragon Quest XI | 30,210 | 0.12% | 2 | 49:52 |
| 65. | Momotarou Densetsu Gaiden | 28,998 | 0.11% | 6 | 11:50:14 |
| 66. | Donkey Kong 64 | 28,306 | 0.11% | 8 | 21:43:32 |
| 67. | Digimon World | 26,946 | 0.11% | 6 | 10:08:59 |
| 68. | Kirby's Return to Dream Land | 23,973 | 0.09% | 13 | 16:31:41 |
| 69. | Densetsu no Stafy 3 | 22,192 | 0.09% | 2 | 4:07:44 |
| 70. | SaGa Frontier 2 | 21,281 | 0.08% | 1 | 3:27:08 |
| 71. | Mega Man | 20,829 | 0.08% | 3 | 34:14 |
| 72. | Bahamut Lagoon | 20,704 | 0.08% | 7 | 14:53:41 |
| 73. | Doraemon | 20,662 | 0.08% | 2 | 2:14:59 |
| 74. | Valkyria Chronicles | 19,768 | 0.08% | 2 | 5:36:20 |
| 75. | Final Fantasy XIII | 19,446 | 0.08% | 1 | 20:02 |
| 76. | Monster Rancher 2 | 18,037 | 0.07% | 2 | 2:48:35 |
| 77. | Final Fantasy IX | 17,704 | 0.07% | 19 | 2:18:02:23 |
| 78. | Pokémon Emerald | 17,602 | 0.07% | 2 | 1:41:38 |
| 79. | Kirby's Dream Land 3 | 17,303 | 0.07% | 8 | 10:56:14 |
| 80. | Romancing SaGa 3 | 16,540 | 0.06% | 4 | 3:25:09 |
| 81. | The Final Fantasy Legend | 15,275 | 0.06% | 2 | 7:09:07 |
| 82. | The Legend of Zelda: The Minish Cap | 14,371 | 0.06% | 2 | 4:53:01 |
| 83. | Chocobo's Dungeon 2 | 14,257 | 0.06% | 2 | 2:29:46 |
| 84. | Hamtaro: Ham-Ham Heartbreak | 14,236 | 0.06% | 1 | 1:29:43 |
| 85. | Donkey Kong Country 3 | 14,163 | 0.06% | 2 | 3:05:09 |
| 86. | Final Fantasy Tactics | 13,741 | 0.05% | 7 | 12:16:28 |
| 87. | Super Mario World | 13,511 | 0.05% | 1 | 33:51 |
| 88. | Pokémon Gold and Silver | 12,937 | 0.05% | 6 | 7:21:30 |
| 89. | Rune Factory Frontier | 11,742 | 0.05% | 1 | 1:34:45 |
| 90. | SaGa Frontier | 11,673 | 0.05% | 10 | 8:13:26 |
| 91. | Donkey Kong Country | 11,598 | 0.05% | 2 | 28:52 |
| 92. | Slayers | 11,359 | 0.04% | 1 | 3:03:12 |
| 93. | Story of Seasons | 10,895 | 0.04% | 6 | 4:49:03 |
| 94. | Dragon Quest X | 10,790 | 0.04% | 3 | 3:21:26 |
| 95. | Mega Man 4 | 9,151 | 0.04% | 1 | 0:00 |
| 96. | Mother 3 | 9,061 | 0.04% | 13 | 16:02:16 |
| 97. | Fire Emblem: Mystery of the Emblem | 8,534 | 0.03% | 1 | 1:43:56 |
| 98. | Mystery Dungeon: Shiren the Wanderer | 8,510 | 0.03% | 3 | 9:39:03 |
| 99. | Mega Man 2 | 8,148 | 0.03% | 4 | 2:08:19 |
| 100. | Papers, Please | 7,915 | 0.03% | 5 | 4:24:48 |
