| 1. | Tear Ring Saga | 89,909 | 11.78% | 55 | 1:13:07:17 |
| 2. | Sonic the Hedgehog 2 | 49,226 | 6.45% | 30 | 3:02:40 |
| 3. | Fire Emblem: Genealogy of the Holy War | 46,113 | 6.04% | 140 | 4:03:38:26 |
| 4. | Sonic CD | 38,951 | 5.11% | 28 | 3:15:04 |
| 5. | Romancing SaGa 2 | 37,476 | 4.91% | 72 | 1:07:48:34 |
| 6. | Romancing SaGa | 31,495 | 4.13% | 47 | 1:02:09:49 |
| 7. | Chrono Trigger | 18,036 | 2.36% | 35 | 16:49:20 |
| 8. | Fire Emblem: Mystery of the Emblem | 17,541 | 2.30% | 88 | 1:18:52:45 |
| 9. | Romancing SaGa 3 | 16,757 | 2.20% | 48 | 23:18:10 |
| 10. | Live A Live | 15,771 | 2.07% | 67 | 1:00:05:19 |
| 11. | Fire Emblem: The Sacred Stones | 13,289 | 1.74% | 34 | 22:25:10 |
| 12. | Sailor Moon | 12,920 | 1.69% | 9 | 3:09:00 |
| 13. | Final Fantasy VI | 12,717 | 1.67% | 92 | 1:19:30:03 |
| 14. | Golden Sun: The Lost Age | 11,935 | 1.56% | 54 | 23:37:01 |
| 15. | Final Fantasy V | 11,418 | 1.50% | 36 | 16:10:51 |
| 16. | Fire Emblem: The Binding Blade | 9,153 | 1.20% | 70 | 1:15:23:54 |
| 17. | Mario Kart 64 | 8,792 | 1.15% | 1 | 58:11 |
| 18. | Unlimited Saga | 8,733 | 1.14% | 201 | 6:18:26:22 |
| 19. | Fire Emblem | 8,346 | 1.09% | 17 | 1:48:50 |
| 20. | Castlevania: Harmony of Dissonance | 8,286 | 1.09% | 29 | 8:54:37 |
| 21. | Imperial SaGa | 7,499 | 0.98% | 64 | 23:57:05 |
| 22. | Fire Emblem: Thracia 776 | 7,319 | 0.96% | 55 | 1:10:35:57 |
| 23. | Golden Sun | 6,989 | 0.92% | 35 | 16:55:44 |
| 24. | Tales of Phantasia | 6,899 | 0.90% | 5 | 2:11:17 |
| 25. | Trials of Mana | 6,773 | 0.89% | 41 | 21:07:22 |
| 26. | Fire Emblem Gaiden | 6,697 | 0.88% | 47 | 1:00:08:07 |
| 27. | SaGa Frontier | 6,066 | 0.80% | 171 | 4:01:54:38 |
| 28. | Densetsu no Stafy 3 | 5,927 | 0.78% | 37 | 14:28:38 |
| 29. | Final Fantasy IV: The After Years | 5,836 | 0.76% | 32 | 14:23:15 |
| 30. | Sonic Advance 3 | 5,251 | 0.69% | 16 | 2:57:56 |
| 31. | Fire Emblem: Archanea Saga | 4,951 | 0.65% | 4 | 2:31:27 |
| 32. | Super Smash Bros. Melee | 4,830 | 0.63% | 11 | 2:46:44 |
| 33. | Sutte Hakkun | 4,774 | 0.63% | 59 | 9:10:15 |
| 34. | SaGa Frontier 2 | 4,319 | 0.57% | 62 | 1:05:56:16 |
| 35. | Chrono Cross | 4,106 | 0.54% | 46 | 1:16:24:59 |
| 36. | Teenage Mutant Ninja Turtles 2: Battle Nexus | 3,999 | 0.52% | 11 | 6:26:46 |
| 37. | Mega Man | 3,726 | 0.49% | 43 | 10:05:43 |
| 38. | Sonic the Hedgehog 3 | 3,703 | 0.49% | 20 | 3:23:30 |
| 39. | Densetsu no Stafy | 3,696 | 0.48% | 27 | 14:37:32 |
| 40. | Rhapsody III: Memories of Marl Kingdom | 3,589 | 0.47% | 20 | 15:27:36 |
| 41. | Arcana Heart 3 | 3,376 | 0.44% | 47 | 1:13:30:22 |
| 42. | Densetsu no Stafy 2 | 3,363 | 0.44% | 29 | 8:37:21 |
| 43. | Mega Man X6 | 2,888 | 0.38% | 9 | 3:24:38 |
| 44. | Naruto: Ultimate Ninja 2 | 2,643 | 0.35% | 2 | 1:18:26 |
| 45. | Pokémon Mystery Dungeon: Explorers of Time and Explorers of Darkness | 2,594 | 0.34% | 1 | 8:43 |
| 46. | Imperishable Night | 2,504 | 0.33% | 29 | 1:54:16 |
| 47. | Castlevania: Aria of Sorrow | 2,422 | 0.32% | 21 | 7:16:18 |
| 48. | Nuga-Cel! | 2,414 | 0.32% | 26 | 15:01:31 |
| 49. | Suggoi! Arcana Heart 2 | 2,321 | 0.30% | 26 | 16:42:18 |
| 50. | Castlevania: Portrait of Ruin | 1,952 | 0.26% | 36 | 14:44:41 |
| 51. | Princess Maker | 1,914 | 0.25% | 1 | 4:18 |
| 52. | Final Fantasy III | 1,797 | 0.24% | 37 | 12:13:53 |
| 53. | Naruto: Clash of Ninja 2 | 1,731 | 0.23% | 8 | 2:39:42 |
| 54. | Fire Emblem: Shadow Dragon and the Blade of Light | 1,621 | 0.21% | 34 | 17:33:18 |
| 55. | Densetsu no Stafy 4 | 1,489 | 0.20% | 29 | 20:00:54 |
| 56. | Princess Minerva | 1,457 | 0.19% | 1 | 2:02 |
| 57. | Super Wagyan Land 2 | 1,429 | 0.19% | 11 | 4:09:33 |
| 58. | Puyo Puyo Sun | 1,414 | 0.19% | 13 | 8:51:33 |
| 59. | Koudelka | 1,408 | 0.18% | 16 | 10:03:19 |
| 60. | Pretty Soldier Sailor Moon | 1,345 | 0.18% | 1 | 1:15:49 |
| 61. | Nage Libre: Seijaku no Suishin | 1,315 | 0.17% | 2 | 1:15:00 |
| 62. | Final Fantasy | 1,241 | 0.16% | 9 | 3:25:09 |
| 63. | Castlevania: Symphony of the Night | 1,152 | 0.15% | 39 | 19:51:12 |
| 64. | Sonic the Hedgehog | 1,129 | 0.15% | 13 | 2:04:55 |
| 65. | Naruto: Ultimate Ninja Storm | 1,118 | 0.15% | 9 | 3:09:04 |
| 66. | Shoot the Bullet | 1,076 | 0.14% | 21 | 1:37:37 |
| 67. | Wagyan Paradise | 1,043 | 0.14% | 11 | 3:13:07 |
| 68. | Metal Slug 4 | 1,036 | 0.14% | 1 | 44:26 |
| 69. | Mystic Square | 1,034 | 0.14% | 1 | 42:47 |
| 70. | Spyro the Dragon | 955 | 0.13% | 13 | 5:05:57 |
| 71. | Double Spoiler | 864 | 0.11% | 22 | 1:58:02 |
| 72. | Gold Rush! | 825 | 0.11% | 1 | 3:40 |
| 73. | Naruto: Ultimate Ninja 3 | 818 | 0.11% | 8 | 5:38:13 |
| 74. | Psycho Soldier | 791 | 0.10% | 1 | 38:13 |
| 75. | RPG Maker 2003 | 745 | 0.10% | 9 | 3:02:32 |
| 76. | Super Mario World 2: Yoshi's Island | 741 | 0.10% | 19 | 6:07:16 |
| 77. | Street Fighter | 689 | 0.09% | 1 | 20:10 |
| 78. | Castlevania: Order of Ecclesia | 680 | 0.09% | 32 | 11:02:06 |
| 79. | Mare | 655 | 0.09% | 18 | 3:31:35 |
| 80. | Immaterial and Missing Power | 648 | 0.08% | 10 | 6:36:13 |
| 81. | Hyperdimension Neptunia Victory | 647 | 0.08% | 50 | 1:18:11:11 |
| 82. | Rhapsody: A Musical Adventure | 646 | 0.08% | 3 | 1:45:34 |
| 83. | Mega Man 7 | 629 | 0.08% | 14 | 5:27:32 |
| 84. | The Legend of Zelda: Ocarina of Time | 618 | 0.08% | 24 | 17:48:35 |
| 85. | Langrisser II | 605 | 0.08% | 1 | 5:50 |
| 86. | Phantasmagoria of Flower View | 591 | 0.08% | 12 | 6:48:55 |
| 87. | Kirby: Nightmare in Dream Land | 591 | 0.08% | 12 | 1:10:15 |
| 88. | Hopeless Masquerade | 569 | 0.07% | 11 | 7:33:45 |
| 89. | Kirby's Adventure | 558 | 0.07% | 9 | 57:36 |
| 90. | Lotus Land Story | 524 | 0.07% | 4 | 1:02:55 |
| 91. | Final Fight 2 | 490 | 0.06% | 1 | 56:53 |
| 92. | Castlevania: Dawn of Sorrow | 486 | 0.06% | 27 | 11:31:46 |
| 93. | Twinkle Star Sprites | 482 | 0.06% | 2 | 36:19 |
| 94. | Sonic the Hedgehog: Triple Trouble | 480 | 0.06% | 6 | 59:14 |
| 95. | Sonic Advance 2 | 464 | 0.06% | 9 | 1:09:51 |
| 96. | Puyo Puyo 2 | 440 | 0.06% | 9 | 6:02:39 |
| 97. | Highly Responsive to Prayers | 434 | 0.06% | 4 | 37:38 |
| 98. | Legacy of Lunatic Kingdom | 433 | 0.06% | 3 | 31:31 |
| 99. | J-Stars Victory VS | 419 | 0.05% | 3 | 2:17:40 |
| 100. | Urban Legend in Limbo | 418 | 0.05% | 20 | 7:35:44 |
