| 1. | The Legend of Zelda | 376,380 | 2.50% | 3 | 1:32:25 |
| 2. | Shining Force III | 340,588 | 2.26% | 4 | 1:07:04 |
| 3. | Yoshi's Island | 339,162 | 2.25% | 1 | 25:58 |
| 4. | Drill Dozer | 308,217 | 2.05% | 1 | 26:19 |
| 5. | Alien Syndrome | 267,358 | 1.78% | 2 | 39:08 |
| 6. | Final Fantasy VI | 243,231 | 1.62% | 3 | 1:03:29 |
| 7. | Valkyrie Profile | 241,219 | 1.60% | 2 | 31:47 |
| 8. | Super Star Soldier | 219,037 | 1.46% | 5 | 1:56:18 |
| 9. | Thunder Force III | 182,340 | 1.21% | 5 | 1:26:29 |
| 10. | Wario Land: Super Mario Land 3 | 161,378 | 1.07% | 1 | 39:20 |
| 11. | Super Mario RPG | 146,448 | 0.97% | 3 | 1:32:38 |
| 12. | Dragon Quest III: The Seeds of Salvation | 141,940 | 0.94% | 1 | 29:00 |
| 13. | Spy vs. Spy | 139,057 | 0.92% | 1 | 28:19 |
| 14. | Mega Man | 138,407 | 0.92% | 16 | 6:41:20 |
| 15. | Secret of Mana | 138,393 | 0.92% | 1 | 30:33 |
| 16. | Chrono Cross | 125,368 | 0.83% | 4 | 1:27:30 |
| 17. | Dragon Quest | 124,729 | 0.83% | 4 | 1:29:35 |
| 18. | Final Fantasy VII | 113,733 | 0.76% | 6 | 3:04:01 |
| 19. | Dragon Quest VIII: The Journey of the Cursed King | 109,540 | 0.73% | 4 | 2:09:53 |
| 20. | Fatal Fury 2 | 89,238 | 0.59% | 2 | 44:50 |
| 21. | Star Fox 64 | 78,540 | 0.52% | 1 | 26:10 |
| 22. | Sonic Adventure | 73,924 | 0.49% | 1 | 31:19 |
| 23. | Lady Stalker: Challenge from the Past | 69,354 | 0.46% | 1 | 30:16 |
| 24. | Blazing Lazers | 69,212 | 0.46% | 3 | 51:28 |
| 25. | Tales of Phantasia | 66,112 | 0.44% | 4 | 1:43:26 |
| 26. | Thunder Force IV | 65,070 | 0.43% | 3 | 53:57 |
| 27. | Alundra 2 | 63,150 | 0.42% | 3 | 1:34:15 |
| 28. | Dark Savior | 61,689 | 0.41% | 2 | 56:48 |
| 29. | Super Mario Bros. | 61,461 | 0.41% | 3 | 1:32:49 |
| 30. | Aleste | 58,408 | 0.39% | 1 | 33:02 |
| 31. | Sega Ninja | 58,323 | 0.39% | 2 | 27:43 |
| 32. | The Legend of Zelda: Majora's Mask | 57,828 | 0.38% | 2 | 1:02:01 |
| 33. | Castlevania: Rondo of Blood | 57,533 | 0.38% | 3 | 22:43 |
| 34. | Jet Set Radio | 56,043 | 0.37% | 1 | 30:07 |
| 35. | Thunder Force | 53,610 | 0.36% | 5 | 57:19 |
| 36. | Summon Night: Swordcraft Story | 53,578 | 0.36% | 3 | 41:03 |
| 37. | Street Fighter II | 49,969 | 0.33% | 3 | 1:12:10 |
| 38. | Klonoa: Empire of Dreams | 49,812 | 0.33% | 1 | 29:16 |
| 39. | Sonic the Hedgehog | 48,437 | 0.32% | 2 | 24:21 |
| 40. | Skull Fang | 47,254 | 0.31% | 2 | 39:20 |
| 41. | Magical Chase | 45,928 | 0.31% | 2 | 39:09 |
| 42. | Lords of Thunder | 45,413 | 0.30% | 1 | 31:18 |
| 43. | Persona 4 | 44,972 | 0.30% | 2 | 1:07:09 |
| 44. | Chrono Trigger | 44,324 | 0.29% | 4 | 1:41:28 |
| 45. | Gran Turismo 2 | 42,477 | 0.28% | 1 | 30:41 |
| 46. | Super Monaco GP | 42,376 | 0.28% | 2 | 37:39 |
| 47. | Tales of Eternia | 42,222 | 0.28% | 3 | 1:29:22 |
| 48. | Dragon Ball Z: Super Butōden | 42,140 | 0.28% | 2 | 1:01:59 |
| 49. | The Hybrid Front | 41,683 | 0.28% | 1 | 25:08 |
| 50. | Breath of Fire III | 41,591 | 0.28% | 2 | 1:00:41 |
| 51. | Final Fantasy V | 41,269 | 0.27% | 3 | 1:17:54 |
| 52. | Dragon Quest V: Hand of the Heavenly Bride | 40,176 | 0.27% | 3 | 1:18:20 |
| 53. | Space Harrier II | 39,881 | 0.27% | 2 | 46:27 |
| 54. | Streets of Rage 3 | 37,626 | 0.25% | 2 | 26:51 |
| 55. | Crash Bandicoot | 37,456 | 0.25% | 1 | 27:01 |
| 56. | Blue Almanac | 36,703 | 0.24% | 2 | 1:00:36 |
| 57. | Dragon Ball Z: Idainaru Goku Densetsu | 36,060 | 0.24% | 4 | 1:15:23 |
| 58. | Hi no Tori Hououhen: Gaou no Bouken | 36,036 | 0.24% | 1 | 31:13 |
| 59. | Wild Arms | 35,728 | 0.24% | 2 | 45:15 |
| 60. | Jak and Daxter: The Precursor Legacy | 35,686 | 0.24% | 2 | 1:04:18 |
| 61. | I.Q.: Intelligent Qube | 35,636 | 0.24% | 1 | 31:01 |
| 62. | Kirby's Adventure | 35,010 | 0.23% | 3 | 1:32:37 |
| 63. | Final Fight 3 | 34,604 | 0.23% | 1 | 28:17 |
| 64. | Xevious | 34,525 | 0.23% | 2 | 1:03:28 |
| 65. | Super Metroid | 32,960 | 0.22% | 1 | 31:44 |
| 66. | Dragon Quest IV: Chapters of the Chosen | 32,739 | 0.22% | 3 | 59:58 |
| 67. | Virtua Fighter | 32,719 | 0.22% | 5 | 1:07:01 |
| 68. | The Legend of the Mystical Ninja | 31,931 | 0.21% | 1 | 28:19 |
| 69. | Shining Force II | 31,861 | 0.21% | 4 | 57:26 |
| 70. | Alundra | 31,683 | 0.21% | 1 | 30:23 |
| 71. | Dreamcast Collection | 31,388 | 0.21% | 5 | 33:15 |
| 72. | Ginga Fukei Densetsu Sapphire | 31,342 | 0.21% | 2 | 1:00:36 |
| 73. | Mario Kart: Super Circuit | 30,821 | 0.20% | 2 | 28:22 |
| 74. | Jade Cocoon 2 | 30,815 | 0.20% | 1 | 30:06 |
| 75. | Threads of Fate | 30,728 | 0.20% | 2 | 1:01:51 |
| 76. | Moto Roader | 30,724 | 0.20% | 2 | 43:57 |
| 77. | Romancing SaGa 2 | 30,377 | 0.20% | 2 | 30:09 |
| 78. | Devil May Cry 2 | 30,305 | 0.20% | 2 | 34:29 |
| 79. | Street Fighter III | 30,063 | 0.20% | 5 | 1:27:35 |
| 80. | Streets of Rage 2 | 29,951 | 0.20% | 3 | 53:55 |
| 81. | Kuro no Ken | 29,651 | 0.20% | 2 | 1:01:40 |
| 82. | Echo Night 2: The Lord of Nightmares | 29,185 | 0.19% | 1 | 32:56 |
| 83. | Kid Icarus | 29,094 | 0.19% | 1 | 30:03 |
| 84. | R-Type | 28,742 | 0.19% | 2 | 40:29 |
| 85. | Growlanser | 28,469 | 0.19% | 2 | 58:54 |
| 86. | Lost in Blue | 28,273 | 0.19% | 1 | 31:59 |
| 87. | Lord Monarch | 27,814 | 0.18% | 1 | 29:20 |
| 88. | Fahrenheit | 27,131 | 0.18% | 1 | 29:37 |
| 89. | Suikoden III | 26,870 | 0.18% | 2 | 30:52 |
| 90. | Ecco: The Tides of Time | 26,722 | 0.18% | 1 | 14:41 |
| 91. | Gekioh: Shooting King | 26,626 | 0.18% | 2 | 58:42 |
| 92. | Crusader of Centy | 26,589 | 0.18% | 1 | 31:10 |
| 93. | Samurai Warriors | 26,572 | 0.18% | 1 | 30:35 |
| 94. | Ninja Five-O | 25,965 | 0.17% | 1 | 30:59 |
| 95. | The King of Fighters 2002 | 25,508 | 0.17% | 1 | 13:21 |
| 96. | Virtua Racing | 25,262 | 0.17% | 3 | 28:51 |
| 97. | The King of Fighters '97 | 25,244 | 0.17% | 2 | 38:01 |
| 98. | Panzer Dragoon II Zwei | 24,973 | 0.17% | 3 | 19:19 |
| 99. | Formula One World Championship: Beyond the Limit | 24,618 | 0.16% | 2 | 1:01:19 |
| 100. | Kakurenbo Battle Monster Tactics | 24,528 | 0.16% | 1 | 29:22 |
