| 1. | Final Fantasy | 1,402,991 | 4.22% | 68 | 2:18:08:30 |
| 2. | Dragon Quest V: Hand of the Heavenly Bride | 1,346,220 | 4.05% | 57 | 3:19:38:03 |
| 3. | Final Fantasy V | 1,212,038 | 3.64% | 57 | 2:02:44:07 |
| 4. | Pokémon Gold and Silver | 966,713 | 2.91% | 50 | 1:11:10:30 |
| 5. | Dragon Quest VII: Fragments of the Forgotten Past | 931,226 | 2.80% | 30 | 3:18:01:43 |
| 6. | Dragon Quest XI | 778,193 | 2.34% | 28 | 3:10:22:33 |
| 7. | Fire Emblem: Mystery of the Emblem | 657,522 | 1.98% | 57 | 1:14:29:26 |
| 8. | Vandal Hearts | 591,748 | 1.78% | 46 | 21:25:24 |
| 9. | KimiKiss | 577,726 | 1.74% | 35 | 1:10:24:10 |
| 10. | Dragon Quest | 570,477 | 1.71% | 33 | 2:00:29:58 |
| 11. | Dragon Quest II: Luminaries of the Legendary Line | 566,166 | 1.70% | 34 | 15:46:14 |
| 12. | Dragon Ball Z II: Gekishin Freeza!! | 447,081 | 1.34% | 23 | 15:41:38 |
| 13. | Dragon Quest Builders 2 | 431,253 | 1.30% | 49 | 1:14:19:56 |
| 14. | Trials of Mana | 427,886 | 1.29% | 42 | 1:11:37:22 |
| 15. | Mystery Dungeon: Shiren the Wanderer | 413,317 | 1.24% | 26 | 1:10:21:45 |
| 16. | Tecmo Cup Soccer Game | 364,782 | 1.10% | 20 | 9:33:46 |
| 17. | Super Robot Wars Alpha | 355,519 | 1.07% | 32 | 2:04:53:54 |
| 18. | Final Fantasy VI | 343,830 | 1.03% | 18 | 1:08:22:32 |
| 19. | Tetris | 337,437 | 1.01% | 41 | 1:19:46:45 |
| 20. | Dark Souls | 327,866 | 0.99% | 27 | 14:25:45 |
| 21. | Super Mario Bros. | 305,923 | 0.92% | 32 | 20:34:12 |
| 22. | SimCity 2000 | 288,624 | 0.87% | 11 | 5:56:41 |
| 23. | Romancing SaGa Re;univerSe | 284,635 | 0.86% | 22 | 12:16:13 |
| 24. | The Final Fantasy Legend | 276,969 | 0.83% | 13 | 8:45:28 |
| 25. | Chrono Trigger | 261,443 | 0.79% | 11 | 1:13:36:40 |
| 26. | Super Mario World | 231,304 | 0.70% | 13 | 10:23:41 |
| 27. | Animal Crossing | 224,718 | 0.68% | 13 | 1:00:51:20 |
| 28. | Dragon Quest VIII: The Journey of the Cursed King | 219,078 | 0.66% | 20 | 13:21:11 |
| 29. | Mega Man | 199,385 | 0.60% | 17 | 23:06:57 |
| 30. | Square's Tom Sawyer | 188,136 | 0.57% | 14 | 8:07:01 |
| 31. | Live A Live | 173,266 | 0.52% | 15 | 1:14:49:48 |
| 32. | Tales of Eternia | 171,314 | 0.51% | 14 | 8:48:21 |
| 33. | Mega Man: Dr. Wily's Revenge | 168,187 | 0.51% | 9 | 8:29:54 |
| 34. | Tales of Destiny | 166,034 | 0.50% | 10 | 6:54:49 |
| 35. | Final Fantasy XV | 164,857 | 0.50% | 23 | 18:33:08 |
| 36. | Adventure Island | 164,450 | 0.49% | 13 | 5:58:35 |
| 37. | Mario Bros. | 158,642 | 0.48% | 7 | 9:46:20 |
| 38. | Doraemon | 156,172 | 0.47% | 6 | 2:58:59 |
| 39. | Dragon Quest III: The Seeds of Salvation | 155,899 | 0.47% | 4 | 19:45:29 |
| 40. | Romancing SaGa 3 | 152,283 | 0.46% | 13 | 9:06:06 |
| 41. | Captain Tsubasa Vol. II: Super Striker | 150,718 | 0.45% | 13 | 18:31:47 |
| 42. | Final Fantasy X | 148,001 | 0.44% | 18 | 20:48:44 |
| 43. | Rust | 143,269 | 0.43% | 3 | 8:50:45 |
| 44. | Phoenix Wright: Ace Attorney | 141,839 | 0.43% | 17 | 18:57:49 |
| 45. | Super Mario All-Stars | 140,892 | 0.42% | 8 | 8:41:50 |
| 46. | The Legend of Zelda: Majora's Mask | 136,108 | 0.41% | 9 | 1:05:06:21 |
| 47. | Dragon Quest Monsters 2 | 127,854 | 0.38% | 6 | 13:29:53 |
| 48. | Pokémon Sword and Shield | 126,487 | 0.38% | 14 | 10:47:44 |
| 49. | Famicom Jump: Hero Retsuden | 124,428 | 0.37% | 9 | 3:07:56 |
| 50. | Dragon Quest VI: Realms of Revelation | 122,948 | 0.37% | 5 | 21:48:54 |
| 51. | Super Mario 64 | 117,066 | 0.35% | 4 | 13:52:41 |
| 52. | River City Ransom | 112,850 | 0.34% | 4 | 5:23:55 |
| 53. | Super Mario Bros. 2 | 112,419 | 0.34% | 8 | 2:26:33 |
| 54. | Demon's Souls | 110,792 | 0.33% | 9 | 5:31:35 |
| 55. | Hanjuku Hero | 110,414 | 0.33% | 10 | 4:38:19 |
| 56. | Dragon Ball Z: Super Saiya Densetsu | 109,621 | 0.33% | 5 | 13:08:24 |
| 57. | Wonder Project J | 108,144 | 0.32% | 9 | 4:57:15 |
| 58. | Super Mario Bros. 3 | 106,501 | 0.32% | 4 | 8:58:45 |
| 59. | Tales of Vesperia | 101,868 | 0.31% | 9 | 6:52:48 |
| 60. | Wario Land: Super Mario Land 3 | 100,973 | 0.30% | 7 | 3:46:16 |
| 61. | Battle Soccer: Field no Hasha | 93,490 | 0.28% | 9 | 3:25:00 |
| 62. | Street Fighter IV | 87,868 | 0.26% | 10 | 22:50:23 |
| 63. | The Portopia Serial Murder Case | 87,581 | 0.26% | 4 | 2:25:24 |
| 64. | Yoshi's Cookie | 86,824 | 0.26% | 4 | 1:40:49 |
| 65. | The Legend of Zelda | 84,352 | 0.25% | 8 | 7:36:14 |
| 66. | PLAYERUNKNOWN'S Battlegrounds | 83,718 | 0.25% | 1 | 3:57:40 |
| 67. | Gokujo Parodius | 83,275 | 0.25% | 8 | 2:40:54 |
| 68. | Kirby Super Star | 78,637 | 0.24% | 9 | 5:22:42 |
| 69. | Donkey Kong Country | 76,967 | 0.23% | 3 | 7:49:19 |
| 70. | Ninja Hattori-kun | 76,334 | 0.23% | 6 | 2:32:19 |
| 71. | Super Mario Land 2: 6 Golden Coins | 74,830 | 0.22% | 4 | 3:52:21 |
| 72. | Street Fighter II | 73,648 | 0.22% | 4 | 10:00:09 |
| 73. | Pokémon Red and Blue | 73,212 | 0.22% | 5 | 2:06:54 |
| 74. | Zelda II: The Adventure of Link | 72,392 | 0.22% | 6 | 2:02:06 |
| 75. | Amagami | 68,858 | 0.21% | 4 | 12:55:14 |
| 76. | Nintendo World Cup | 65,872 | 0.20% | 7 | 3:05:37 |
| 77. | Mega Man 2 | 62,368 | 0.19% | 2 | 1:36:09 |
| 78. | Disney's Aladdin | 62,107 | 0.19% | 3 | 2:40:03 |
| 79. | Final Fantasy Legend II | 60,239 | 0.18% | 5 | 11:02:10 |
| 80. | Silent Hill 2 | 60,168 | 0.18% | 6 | 2:35:32 |
| 81. | THE iDOLM@STER | 59,538 | 0.18% | 7 | 6:15:22 |
| 82. | Minecraft | 54,431 | 0.16% | 4 | 5:36:01 |
| 83. | Kingdom Hearts II | 52,468 | 0.16% | 5 | 3:11:10 |
| 84. | Torneko: The Last Hope | 50,236 | 0.15% | 1 | 1:58:07 |
| 85. | Tales of Rebirth | 48,657 | 0.15% | 5 | 10:03:31 |
| 86. | The Legend of Zelda: Link's Awakening | 48,063 | 0.14% | 3 | 12:42:59 |
| 87. | Undertale | 47,430 | 0.14% | 3 | 8:48:56 |
| 88. | Bahamut Lagoon | 47,292 | 0.14% | 4 | 11:59:24 |
| 89. | AI: The Somnium Files | 46,730 | 0.14% | 11 | 12:49:17 |
| 90. | Yoshi's Island | 46,627 | 0.14% | 3 | 19:42:37 |
| 91. | Super Robot Wars T | 44,354 | 0.13% | 4 | 5:55:26 |
| 92. | Animal Crossing: Wild World | 42,136 | 0.13% | 1 | 3:48:48 |
| 93. | Resident Evil 4 | 40,752 | 0.12% | 10 | 4:51:51 |
| 94. | Tales of Destiny 2 | 39,681 | 0.12% | 4 | 2:57:01 |
| 95. | Crystalis | 38,871 | 0.12% | 3 | 8:03:29 |
| 96. | Dragon Quest Monsters | 38,331 | 0.12% | 1 | 41:30 |
| 97. | Street Fighter | 37,489 | 0.11% | 2 | 5:15:28 |
| 98. | Super Bomberman R | 35,979 | 0.11% | 3 | 8:52:13 |
| 99. | The Legend of Zelda: Ocarina of Time | 34,963 | 0.11% | 2 | 6:08:20 |
| 100. | Mario Paint | 34,620 | 0.10% | 2 | 2:33:11 |
