| 1. | Wario Land: Super Mario Land 3 | 240,355 | 16.23% | 14 | 6:04:31 |
| 2. | Wario Land 4 | 74,384 | 5.02% | 26 | 5:26:09 |
| 3. | Super Mario Land 2: 6 Golden Coins | 32,971 | 2.23% | 24 | 4:11:39 |
| 4. | Flame of Recca | 16,248 | 1.10% | 14 | 2:43:06 |
| 5. | Rhythm Heaven | 14,984 | 1.01% | 36 | 5:00:21 |
| 6. | Sailor Moon | 13,501 | 0.91% | 14 | 3:14:02 |
| 7. | Baseball | 12,459 | 0.84% | 2 | 35:22 |
| 8. | Magic Knight Rayearth | 11,460 | 0.77% | 38 | 7:09:13 |
| 9. | Slam Dunk 2 - IH Yosen Kanzen Ban!! | 9,893 | 0.67% | 4 | 1:27:59 |
| 10. | Kirby's Pinball Land | 9,013 | 0.61% | 6 | 1:17:00 |
| 11. | Ganbare Goemon: Sarawareta Ebisumaru! | 7,719 | 0.52% | 8 | 2:31:22 |
| 12. | Street Fighter II | 7,313 | 0.49% | 19 | 2:44:46 |
| 13. | Onimusha Tactics | 6,823 | 0.46% | 36 | 7:07:46 |
| 14. | Adventure Island II | 6,785 | 0.46% | 8 | 1:04:44 |
| 15. | Dragon Ball: Advanced Adventure | 6,649 | 0.45% | 33 | 4:59:47 |
| 16. | Super Mario Advance 4: Super Mario Bros. 3 | 6,273 | 0.42% | 3 | 18:10 |
| 17. | Dragon Ball | 6,266 | 0.42% | 40 | 10:42:19 |
| 18. | Kirby's Block Ball | 6,182 | 0.42% | 17 | 2:17:33 |
| 19. | Nintendo World Cup | 5,947 | 0.40% | 15 | 1:45:53 |
| 20. | The Bugs Bunny Crazy Castle 2 | 5,608 | 0.38% | 2 | 20:21 |
| 21. | Harvest Moon | 4,788 | 0.32% | 10 | 1:52:42 |
| 22. | Mario's Picross | 4,786 | 0.32% | 94 | 18:00:25 |
| 23. | Yoshi | 4,673 | 0.32% | 2 | 49:09 |
| 24. | Wario Land 3 | 4,569 | 0.31% | 49 | 6:11:28 |
| 25. | The Magic Circle | 4,343 | 0.29% | 1 | 8:38 |
| 26. | Mahjong Soul | 4,081 | 0.28% | 21 | 1:02:51 |
| 27. | Pokémon Red and Blue | 3,934 | 0.27% | 25 | 5:38:58 |
| 28. | Dragon Ball Z: Supersonic Warriors | 3,910 | 0.26% | 9 | 1:47:52 |
| 29. | Mario's Super Picross | 3,470 | 0.23% | 77 | 18:23:32 |
| 30. | Phoenix Wright: Ace Attorney | 2,942 | 0.20% | 46 | 1:01:42:07 |
| 31. | Hammerin' Harry | 2,889 | 0.20% | 3 | 22:12 |
| 32. | Tetris | 2,782 | 0.19% | 13 | 1:25:58 |
| 33. | One Piece: Yume no Lufy Kaizokudan Tanjou | 2,735 | 0.18% | 34 | 15:34:33 |
| 34. | Tokyo Highway Battle | 2,523 | 0.17% | 3 | 22:47 |
| 35. | Puyo Pop Fever | 2,514 | 0.17% | 31 | 2:06:23 |
| 36. | Dexterity | 2,412 | 0.16% | 10 | 2:09:34 |
| 37. | Amazing Penguin | 2,341 | 0.16% | 10 | 51:45 |
| 38. | WarioWare, Inc.: Mega Microgames! | 2,280 | 0.15% | 3 | 29:52 |
| 39. | The Legend of Zelda: Link's Awakening | 2,108 | 0.14% | 8 | 2:16:08 |
| 40. | Dragon Ball Z: The Legacy of Goku II | 2,090 | 0.14% | 27 | 0:00 |
| 41. | Mario's Picross 2 | 2,020 | 0.14% | 74 | 1:03:02:13 |
| 42. | Initial D Special Stage | 1,959 | 0.13% | 3 | 19:40 |
| 43. | Dragon Ball Z: Super Butōden | 1,947 | 0.13% | 7 | 15:57 |
| 44. | Final Fantasy X | 1,900 | 0.13% | 49 | 15:35:48 |
| 45. | Mario vs. Donkey Kong | 1,859 | 0.13% | 24 | 2:17:28 |
| 46. | Wario Land II | 1,726 | 0.12% | 14 | 2:52:25 |
| 47. | Kingdom Hearts: Chain of Memories | 1,705 | 0.12% | 24 | 2:40:08 |
| 48. | Kirby Super Star | 1,704 | 0.12% | 4 | 49:18 |
| 49. | Tokimeki Memorial | 1,566 | 0.11% | 20 | 2:33:04 |
| 50. | Romancing SaGa 3 | 1,498 | 0.10% | 2 | 19:27 |
| 51. | Bomberman Jetters | 1,454 | 0.10% | 40 | 2:14:26 |
| 52. | Super Mario Bros. | 1,444 | 0.10% | 4 | 16:14 |
| 53. | Legend of the River King | 1,096 | 0.07% | 31 | 8:41:21 |
| 54. | Mole Mania | 955 | 0.06% | 20 | 7:05:23 |
| 55. | Super Mario RPG | 951 | 0.06% | 42 | 5:15:09 |
| 56. | Pokémon Ruby and Sapphire | 934 | 0.06% | 29 | 2:55:56 |
| 57. | Mega Man | 853 | 0.06% | 3 | 33:17 |
| 58. | Momotaro Dentetsu | 852 | 0.06% | 11 | 6:33:27 |
| 59. | Onimusha 2: Samurai's Destiny | 845 | 0.06% | 36 | 5:56:58 |
| 60. | Sword of Mana | 843 | 0.06% | 31 | 1:58:48 |
| 61. | Super Mario Land | 831 | 0.06% | 5 | 1:44:00 |
| 62. | Dragon Quest | 751 | 0.05% | 19 | 4:27:04 |
| 63. | Hi Hi Puffy AmiYumi: Kaznapped! | 730 | 0.05% | 5 | 1:18:37 |
| 64. | Resident Evil: The Umbrella Chronicles | 725 | 0.05% | 29 | 4:49:42 |
| 65. | Sakura Wars | 678 | 0.05% | 27 | 1:18:48 |
| 66. | Wagyan Paradise | 664 | 0.04% | 9 | 0:00 |
| 67. | Donkey Kong '94 | 628 | 0.04% | 14 | 1:44:33 |
| 68. | Wario Land: Shake It! | 608 | 0.04% | 19 | 2:49:51 |
| 69. | Pole's Big Adventure | 591 | 0.04% | 8 | 1:25:04 |
| 70. | Kuru Kuru Kururin | 591 | 0.04% | 10 | 0:00 |
| 71. | Power Pro GB | 589 | 0.04% | 3 | 43:11 |
| 72. | Kirby's Adventure | 558 | 0.04% | 13 | 3:49:26 |
| 73. | Earthbound | 543 | 0.04% | 28 | 49:22 |
| 74. | Mario Golf | 528 | 0.04% | 12 | 4:22:27 |
| 75. | Kirby's Dream Land 2 | 526 | 0.04% | 8 | 2:32:56 |
| 76. | Crash Bandicoot: The Huge Adventure | 502 | 0.03% | 6 | 45:04 |
| 77. | Ranma 1/2 | 473 | 0.03% | 2 | 8:18 |
| 78. | Adventure Island | 466 | 0.03% | 2 | 13:11 |
| 79. | Onimusha: Warlords | 432 | 0.03% | 13 | 2:12:15 |
| 80. | Graduation | 416 | 0.03% | 3 | 1:46:34 |
| 81. | Sakura Momoko no Ukiuki Carnival | 412 | 0.03% | 15 | 0:00 |
| 82. | Doraemon | 412 | 0.03% | 9 | 30:57 |
| 83. | Neon Genesis Evangelion | 408 | 0.03% | 9 | 2:03:54 |
| 84. | Double Dragon II | 405 | 0.03% | 4 | 1:15:02 |
| 85. | Super Mario Kart | 401 | 0.03% | 6 | 1:17:05 |
| 86. | Yoshi's Woolly World | 400 | 0.03% | 49 | 8:52:30 |
| 87. | Momotarou Densetsu Gaiden | 391 | 0.03% | 9 | 1:40:57 |
| 88. | Mario Tennis | 377 | 0.03% | 15 | 5:39:42 |
| 89. | Final Fight | 376 | 0.03% | 2 | 32:31 |
| 90. | Hamtaro: Ham-Hams Unite! | 366 | 0.02% | 13 | 3:32:29 |
| 91. | WarioWare: Twisted! | 350 | 0.02% | 9 | 1:00:08 |
| 92. | Puyo Puyo | 350 | 0.02% | 3 | 48:59 |
| 93. | Mario Kart Tour | 341 | 0.02% | 19 | 1:21:47 |
| 94. | Super Bomberman 3 | 326 | 0.02% | 5 | 0:00 |
| 95. | Donkey Kong | 326 | 0.02% | 11 | 1:18:27 |
| 96. | Final Fight 2 | 326 | 0.02% | 3 | 1:20:37 |
| 97. | Resident Evil 2 | 326 | 0.02% | 12 | 3:35:31 |
| 98. | Resident Evil | 324 | 0.02% | 8 | 1:24:29 |
| 99. | Bomberman GB | 321 | 0.02% | 8 | 1:35:45 |
| 100. | Double Dragon | 300 | 0.02% | 4 | 45:46 |
