| 1. | Mega Man | 2,927,493 | 2.40% | 13 | 4:33:02 |
| 2. | Dragon Quest | 2,425,310 | 1.98% | 10 | 3:35:13 |
| 3. | Dragon Quest II: Luminaries of the Legendary Line | 2,255,230 | 1.85% | 6 | 1:04:15 |
| 4. | Dragon Quest IV: Chapters of the Chosen | 2,205,204 | 1.80% | 4 | 50:54 |
| 5. | Miracle Warriors: Seal of the Dark Lord | 2,029,465 | 1.66% | 1 | 17:12 |
| 6. | Mario Bros. | 1,579,666 | 1.29% | 2 | 23:27 |
| 7. | Digital Devil Story: Megami Tensei II | 1,538,960 | 1.26% | 2 | 42:54 |
| 8. | Super Mario Bros. | 1,451,715 | 1.19% | 12 | 2:51:06 |
| 9. | The Final Fantasy Legend | 1,258,937 | 1.03% | 8 | 0:00 |
| 10. | Final Fantasy | 1,223,570 | 1.00% | 3 | 50:00 |
| 11. | Final Fantasy III | 1,203,247 | 0.98% | 2 | 13:29 |
| 12. | Hydlide 3: The Space Memories | 1,138,967 | 0.93% | 6 | 40:09 |
| 13. | Salamander | 1,061,187 | 0.87% | 1 | 27:50 |
| 14. | Jaseiken Necromancer | 1,001,009 | 0.82% | 2 | 37:01 |
| 15. | Minelvaton Saga: Ragon no Fukkatsu | 952,433 | 0.78% | 3 | 35:22 |
| 16. | Super Mario Bros.: The Lost Levels | 937,751 | 0.77% | 3 | 32:34 |
| 17. | Dragon Buster | 819,479 | 0.67% | 4 | 1:03:15 |
| 18. | Dragon Quest III: The Seeds of Salvation | 745,942 | 0.61% | 2 | 10:34 |
| 19. | Rolling Thunder | 715,761 | 0.59% | 2 | 22:23 |
| 20. | Famicom Jump: Hero Retsuden | 646,133 | 0.53% | 2 | 53:24 |
| 21. | Dragon Ball Z: Sagas | 646,076 | 0.53% | 1 | 19:00 |
| 22. | Milon's Secret Castle | 625,561 | 0.51% | 5 | 1:28:56 |
| 23. | The Legend of Kage | 618,204 | 0.51% | 2 | 26:40 |
| 24. | Destiny of an Emperor | 608,725 | 0.50% | 3 | 17:18 |
| 25. | Final Fantasy II | 589,588 | 0.48% | 3 | 7:27 |
| 26. | Metal Gear | 538,613 | 0.44% | 3 | 1:10:30 |
| 27. | Hoshi Wo Miru Hito | 527,709 | 0.43% | 1 | 22:47 |
| 28. | Final Fantasy IV | 499,357 | 0.41% | 1 | 23:16 |
| 29. | Castlevania | 493,445 | 0.40% | 1 | 10:59 |
| 30. | Spelunker | 485,813 | 0.40% | 2 | 0:00 |
| 31. | The Legend of Zelda | 469,627 | 0.38% | 2 | 25:30 |
| 32. | Athena | 463,031 | 0.38% | 1 | 14:24 |
| 33. | Faxanadu | 457,004 | 0.37% | 1 | 23:30 |
| 34. | The Goonies | 451,141 | 0.37% | 2 | 0:00 |
| 35. | Double Dragon II | 450,445 | 0.37% | 2 | 34:55 |
| 36. | I Love Softball | 428,964 | 0.35% | 1 | 17:49 |
| 37. | Ultima IV: Quest of the Avatar | 410,635 | 0.34% | 1 | 18:04 |
| 38. | Last Armageddon | 408,450 | 0.33% | 1 | 15:30 |
| 39. | Sweet Home | 407,005 | 0.33% | 1 | 31:24 |
| 40. | Wonder Momo | 385,738 | 0.32% | 1 | 9:05 |
| 41. | Teenage Mutant Ninja Turtles | 376,920 | 0.31% | 1 | 20:36 |
| 42. | Altered Beast | 375,086 | 0.31% | 2 | 37:15 |
| 43. | Little Ninja Brothers | 373,783 | 0.31% | 1 | 27:00 |
| 44. | Sansara Naga | 368,941 | 0.30% | 1 | 16:41 |
| 45. | Benkei Gaiden | 357,838 | 0.29% | 2 | 1:14:38 |
| 46. | Otaku no Seiza: An Adventure in the Otaku Galaxy | 353,859 | 0.29% | 1 | 31:10 |
| 47. | Contra | 335,062 | 0.27% | 1 | 21:03 |
| 48. | Lagrange Point | 328,250 | 0.27% | 1 | 38:19 |
| 49. | Tokimeki Memorial | 324,135 | 0.27% | 2 | 56:08 |
| 50. | Robowarrior | 314,664 | 0.26% | 1 | 6:18 |
| 51. | Brain Lord | 313,787 | 0.26% | 1 | 29:23 |
| 52. | The Wing of Madoola | 313,052 | 0.26% | 1 | 19:46 |
| 53. | Dragon Ball Z: Super Saiya Densetsu | 307,346 | 0.25% | 1 | 0:00 |
| 54. | Radia Senki: Reimeihen | 306,428 | 0.25% | 2 | 1:11:07 |
| 55. | Ghost Lion | 306,242 | 0.25% | 1 | 20:44 |
| 56. | Square's Tom Sawyer | 304,950 | 0.25% | 1 | 24:00 |
| 57. | Final Fantasy Mystic Quest | 303,054 | 0.25% | 1 | 0:00 |
| 58. | Yokai Dochuki | 299,113 | 0.24% | 1 | 20:45 |
| 59. | Captain Tsubasa Vol. II: Super Striker | 296,371 | 0.24% | 1 | 9:22 |
| 60. | Fist of the North Star | 295,397 | 0.24% | 1 | 44:00 |
| 61. | Zero4 Champ RR | 289,994 | 0.24% | 1 | 7:18 |
| 62. | Clash at Demonhead | 284,726 | 0.23% | 1 | 26:25 |
| 63. | Egg Monster Hero | 281,742 | 0.23% | 1 | 11:27 |
| 64. | The Magic of Scheherazade | 273,522 | 0.22% | 1 | 24:06 |
| 65. | Breath of Fire | 272,378 | 0.22% | 2 | 1:06:23 |
| 66. | Vulcan Venture | 269,305 | 0.22% | 1 | 28:26 |
| 67. | Kaguya-hime Densetsu | 267,045 | 0.22% | 1 | 10:02 |
| 68. | Karnov | 262,405 | 0.21% | 1 | 19:48 |
| 69. | Dragon Ball Z Side Story: Plan to Eradicate the Saiyans | 259,050 | 0.21% | 1 | 24:39 |
| 70. | Clock Tower | 258,913 | 0.21% | 1 | 30:05 |
| 71. | Starship Hector | 257,724 | 0.21% | 1 | 12:30 |
| 72. | Shin Megami Tensei | 257,637 | 0.21% | 1 | 43:32 |
| 73. | Silva Saga II: The Legend of Light and Darkness | 256,650 | 0.21% | 1 | 45:54 |
| 74. | Wrath of the Black Manta | 252,116 | 0.21% | 1 | 25:54 |
| 75. | Makai Hakkenden Shada | 248,728 | 0.20% | 1 | 23:59 |
| 76. | Shining in the Darkness | 248,012 | 0.20% | 2 | 33:19 |
| 77. | Shin Megami Tensei II | 245,954 | 0.20% | 1 | 0:00 |
| 78. | Tsuppari Wars | 244,078 | 0.20% | 2 | 0:00 |
| 79. | Cosmo Police Galivan | 237,586 | 0.19% | 1 | 21:22 |
| 80. | Kid Niki: Radical Ninja | 237,299 | 0.19% | 2 | 33:47 |
| 81. | Super Mario Bros. 3 | 236,830 | 0.19% | 2 | 17:22 |
| 82. | Fantasy Zone | 233,132 | 0.19% | 1 | 15:49 |
| 83. | Layla | 232,275 | 0.19% | 1 | 18:09 |
| 84. | Amagon | 230,178 | 0.19% | 1 | 14:31 |
| 85. | Double Dragon III: The Sacred Stones | 229,948 | 0.19% | 1 | 22:28 |
| 86. | Phantasy Star | 228,643 | 0.19% | 1 | 29:10 |
| 87. | Top Striker | 227,358 | 0.19% | 1 | 0:00 |
| 88. | Tales of Phantasia | 225,950 | 0.18% | 1 | 0:00 |
| 89. | Ys III: Wanderers from Ys | 223,415 | 0.18% | 1 | 28:10 |
| 90. | Esper Dream | 222,140 | 0.18% | 1 | 31:04 |
| 91. | Ninja Jajamaru-kun | 219,909 | 0.18% | 1 | 14:55 |
| 92. | Tashiro Masashi no Princess ga Ippai | 218,023 | 0.18% | 1 | 17:55 |
| 93. | Xexyz | 217,512 | 0.18% | 1 | 24:36 |
| 94. | Super Chinese 3 | 217,056 | 0.18% | 1 | 29:29 |
| 95. | Tenshi no Uta | 215,603 | 0.18% | 2 | 1:13:57 |
| 96. | Matsukata Hiroki no Super Trawling | 213,088 | 0.17% | 1 | 30:09 |
| 97. | Dungeon Explorer | 211,890 | 0.17% | 1 | 24:31 |
| 98. | R-Type | 210,577 | 0.17% | 1 | 18:41 |
| 99. | Idol Hakkenden | 209,139 | 0.17% | 1 | 25:29 |
| 100. | Phantasy Star II | 199,407 | 0.16% | 1 | 38:58 |
