| 1. | Chrono Trigger | 627,562 | 5.82% | 11 | 59:47 |
| 2. | Animal Crossing | 392,766 | 3.65% | 1 | 1:12 |
| 3. | Conker's Bad Fur Day | 375,945 | 3.49% | 5 | 50:15 |
| 4. | Teenage Mutant Ninja Turtles IV: Turtles in Time | 336,739 | 3.13% | 2 | 6:06 |
| 5. | Donkey Kong Country | 305,258 | 2.83% | 7 | 36:06 |
| 6. | Super Mario RPG | 279,627 | 2.60% | 6 | 41:23 |
| 7. | Super Mario World 2: Yoshi's Island | 263,601 | 2.45% | 4 | 9:55 |
| 8. | The Legend of Zelda: A Link to the Past | 253,454 | 2.35% | 5 | 14:25 |
| 9. | Super Mario 64 | 215,385 | 2.00% | 17 | 2:19:55 |
| 10. | Final Fantasy VI | 204,006 | 1.89% | 7 | 40:52 |
| 11. | Earthbound | 202,187 | 1.88% | 3 | 8:29 |
| 12. | Street Fighter II | 195,782 | 1.82% | 1 | 2:23 |
| 13. | Star Fox | 190,114 | 1.76% | 3 | 21:22 |
| 14. | Kirby Super Star | 178,232 | 1.65% | 2 | 4:49 |
| 15. | Super Metroid | 177,247 | 1.65% | 4 | 18:53 |
| 16. | Mega Man X | 173,706 | 1.61% | 2 | 4:10 |
| 17. | Super Mario World | 172,959 | 1.61% | 3 | 5:53 |
| 18. | NBA Jam: Tournament Edition | 162,989 | 1.51% | 2 | 3:14 |
| 19. | Super Bomberman 2 | 159,572 | 1.48% | 1 | 3:03 |
| 20. | Terranigma | 142,861 | 1.33% | 2 | 4:43 |
| 21. | Donkey Kong Country 2 | 139,714 | 1.30% | 3 | 11:20 |
| 22. | The Legend of Zelda: Ocarina of Time | 131,417 | 1.22% | 13 | 1:00:18 |
| 23. | Killer Instinct | 131,176 | 1.22% | 1 | 2:11 |
| 24. | Mario Kart 64 | 126,618 | 1.18% | 7 | 44:14 |
| 25. | Star Fox 64 | 126,023 | 1.17% | 4 | 11:02 |
| 26. | Mega Man X2 | 119,409 | 1.11% | 2 | 11:32 |
| 27. | Contra III: The Alien Wars | 115,408 | 1.07% | 1 | 2:35 |
| 28. | Sparkster | 103,746 | 0.96% | 1 | 2:23 |
| 29. | Donkey Kong 64 | 96,194 | 0.89% | 6 | 54:01 |
| 30. | Earthworm Jim | 88,417 | 0.82% | 1 | 5:05 |
| 31. | Donkey Kong Country 3 | 81,902 | 0.76% | 1 | 2:50 |
| 32. | Rayman 2: The Great Escape | 78,432 | 0.73% | 6 | 33:24 |
| 33. | Secret of Mana | 77,425 | 0.72% | 1 | 1:48 |
| 34. | Banjo-Kazooie | 76,408 | 0.71% | 8 | 42:23 |
| 35. | Dragon Quest VI: Realms of Revelation | 76,022 | 0.71% | 1 | 3:03 |
| 36. | Super Turrican 2 | 74,025 | 0.69% | 1 | 2:46 |
| 37. | Diddy Kong Racing | 73,120 | 0.68% | 7 | 52:53 |
| 38. | ActRaiser | 69,680 | 0.65% | 1 | 1:49 |
| 39. | Super Castlevania IV | 61,496 | 0.57% | 1 | 3:11 |
| 40. | Demon's Crest | 60,160 | 0.56% | 1 | 5:49 |
| 41. | Super Mario Kart | 58,541 | 0.54% | 3 | 27:24 |
| 42. | Earthworm Jim 3D | 56,384 | 0.52% | 1 | 1:30 |
| 43. | GoldenEye 007 | 51,582 | 0.48% | 2 | 6:30 |
| 44. | Paper Mario | 48,284 | 0.45% | 7 | 13:17 |
| 45. | Lufia II: Rise of the Sinistrals | 46,264 | 0.43% | 1 | 2:28 |
| 46. | Final Fantasy Mystic Quest | 46,256 | 0.43% | 1 | 2:10 |
| 47. | Yoshi's Story | 43,584 | 0.40% | 3 | 6:44 |
| 48. | Super Turrican | 41,846 | 0.39% | 1 | 3:57 |
| 49. | Mega Man X3 | 41,473 | 0.38% | 1 | 1:14 |
| 50. | Luigi's Mansion | 37,337 | 0.35% | 2 | 29:30 |
| 51. | Mario Party | 36,464 | 0.34% | 2 | 12:20 |
| 52. | Killer Instinct Gold | 36,105 | 0.34% | 1 | 2:34 |
| 53. | Final Fantasy V | 35,322 | 0.33% | 1 | 2:25 |
| 54. | Super Smash Bros. | 34,949 | 0.32% | 3 | 15:01 |
| 55. | Super Mario Sunshine | 33,390 | 0.31% | 3 | 9:57 |
| 56. | The Legend of Zelda: Majora's Mask | 31,377 | 0.29% | 3 | 6:54 |
| 57. | Resident Evil 2 | 31,208 | 0.29% | 2 | 3:02 |
| 58. | Bahamut Lagoon | 30,296 | 0.28% | 1 | 5:06 |
| 59. | Super Smash Bros. Melee | 25,466 | 0.24% | 7 | 35:03 |
| 60. | Ridge Racer 64 | 25,313 | 0.23% | 1 | 3:47 |
| 61. | Tetrisphere | 24,320 | 0.23% | 1 | 6:32 |
| 62. | San Francisco Rush 2049 | 24,017 | 0.22% | 1 | 3:51 |
| 63. | The Simpsons: Road Rage | 23,748 | 0.22% | 1 | 3:39 |
| 64. | Wave Race 64 | 23,617 | 0.22% | 1 | 1:59 |
| 65. | Blast Corps | 23,356 | 0.22% | 1 | 3:20 |
| 66. | Alien Hominid | 20,768 | 0.19% | 1 | 2:58 |
| 67. | Buck Bumble | 19,521 | 0.18% | 1 | 2:15 |
| 68. | Final Fantasy Crystal Chronicles | 17,950 | 0.17% | 4 | 15:00 |
| 69. | Turok 2: Seeds of Evil | 16,673 | 0.15% | 1 | 5:42 |
| 70. | F-Zero X | 16,261 | 0.15% | 2 | 13:34 |
| 71. | The Legend of Zelda: The Wind Waker | 15,768 | 0.15% | 3 | 12:51 |
| 72. | Paper Mario: The Thousand-Year Door | 15,157 | 0.14% | 5 | 17:22 |
| 73. | Sonic Adventure 2 | 14,952 | 0.14% | 3 | 8:23 |
| 74. | Mario Party 7 | 14,677 | 0.14% | 1 | 1:53 |
| 75. | Kirby 64: The Crystal Shards | 13,004 | 0.12% | 2 | 12:41 |
| 76. | Mario Party 2 | 11,064 | 0.10% | 2 | 40:56 |
| 77. | Metroid Prime | 10,286 | 0.10% | 5 | 23:59 |
| 78. | Super Mario Party | 10,016 | 0.09% | 1 | 1:43 |
| 79. | F-Zero GX | 9,649 | 0.09% | 4 | 34:27 |
| 80. | The Legend of Zelda: Twilight Princess | 8,566 | 0.08% | 2 | 29:54 |
| 81. | GoldenEye: Rogue Agent | 7,771 | 0.07% | 1 | 3:00 |
| 82. | Metroid Prime 2: Echoes | 7,630 | 0.07% | 3 | 17:03 |
| 83. | MTV Sports: Snowboarding | 7,220 | 0.07% | 1 | 9:48 |
| 84. | Mario Kart: Double Dash!! | 7,199 | 0.07% | 1 | 5:48 |
| 85. | Star Fox Adventures | 7,159 | 0.07% | 2 | 7:26 |
| 86. | Hot Wheels: Velocity X | 6,983 | 0.06% | 1 | 6:11 |
| 87. | Dragon Ball Z: Budokai | 6,683 | 0.06% | 1 | 3:45 |
| 88. | Ty the Tasmanian Tiger | 6,422 | 0.06% | 2 | 4:19 |
| 89. | TimeSplitters 2 | 5,309 | 0.05% | 2 | 34:41 |
| 90. | Tales of Symphonia | 5,230 | 0.05% | 2 | 6:06 |
| 91. | Bomberman Generation | 5,101 | 0.05% | 1 | 5:44 |
| 92. | Burnout | 4,788 | 0.04% | 1 | 2:31 |
| 93. | Tetris Worlds | 4,393 | 0.04% | 1 | 3:31 |
| 94. | Rayman 3: Hoodlum Havoc | 4,025 | 0.04% | 1 | 2:41 |
| 95. | Baten Kaitos: Eternal Wings and the Lost Ocean | 3,904 | 0.04% | 2 | 7:56 |
| 96. | Gauntlet: Dark Legacy | 3,836 | 0.04% | 2 | 5:56 |
| 97. | Mega Man Network Transmission | 3,826 | 0.04% | 1 | 3:27 |
| 98. | Fire Emblem: Path of Radiance | 3,711 | 0.03% | 2 | 6:22 |
| 99. | Pikmin | 3,503 | 0.03% | 1 | 5:47 |
| 100. | Eternal Darkness | 3,029 | 0.03% | 2 | 10:54 |
