Modeling Gene Expression and Chromatin State in Terms of Regulatory Sites

Published on ● Video Link: https://www.youtube.com/watch?v=PJN98aELhKQ



Duration: 37:04
437 views
1


Erik Van Nimwegen, Basel University
Regulatory Genomics and Epigenomics
https://simons.berkeley.edu/talks/erikvan-nimwegen-03-09-16




Other Videos By Simons Institute for the Theory of Computing


2016-03-11Accurate, Fast, and Model-Aware Transcript Expression Quantification with Salmon
2016-03-11Reconstructing Dynamic Signaling and Regulatory Networks
2016-03-11Co-occupancy Networks for Histone Modifications and Chromatin Associated Proteins
2016-03-11Beyond Enhancer Modularity: Locus-level Control of Gene Expression in Development
2016-03-11Scoring Transcript Variation in Single Cell RNA-seq Data
2016-03-11Learning Feature-Based Protein-DNA Recognition Models from SELEX Data
2016-03-11Deep Learning Frameworks for Regulatory Genomics and Epigenomics
2016-03-11Mapping Nucleosome Positions Using DNase
2016-03-11Genome in 3D: Modeling Chromosome Organization
2016-03-11Computational Genomics of Post-Transcriptional Gene Regulation
2016-03-11Modeling Gene Expression and Chromatin State in Terms of Regulatory Sites
2016-03-11Personal Transcription Factor Binding Site Mutations Point to Personal Medical Histories
2016-03-11Elucidating Sequence-Structure Binding Motifs by Uncovering Selection Trends in HT-SELEX Experiments
2016-03-11Hierarchical Regulatory Domain Inference from Hi-C Data
2016-03-11Telomere Length, Nature and Nurture
2016-03-11Modelling Gene Expression Dynamics with Gaussian Processes
2016-03-11Analysis Methods for Single Cell RNA-seq with Application to T-cell Function
2016-03-11Utilizing de Bruijn Graphs in Universal Sequence Design for Discovery of Regulatory Elements
2016-03-11Genome-wide Prediction of Enhancers and Their Target Genes Using ENCODE Data
2016-03-11Chromatin Dynamics and Gene Regulation During Motor Neuron Programming
2016-02-29Lower Bounds on the Critical Density in the Hard Disk Model via Optimized Metrics



Tags:
Simons Institute
UC Berkeley
computer science
theory of computing
Algorithmic Challenges in Genomics
Erik Van Nimwegen