| 1. | Teenage Mutant Ninja Turtles III: The Manhattan Project | 1,873,608 | 7.81% | 2 | 2:04:26 |
| 2. | The Legend of Zelda | 1,301,760 | 5.43% | 6 | 7:03:50 |
| 3. | Super Mario Bros. 3 | 1,011,226 | 4.22% | 1 | 3:23:23 |
| 4. | The Legend of Zelda: A Link to the Past | 697,435 | 2.91% | 3 | 6:24:07 |
| 5. | Final Fantasy | 673,996 | 2.81% | 2 | 6:36:42 |
| 6. | Super Metroid | 617,389 | 2.57% | 2 | 3:37:14 |
| 7. | Super Mario World | 559,930 | 2.33% | 3 | 4:18:07 |
| 8. | Zelda II: The Adventure of Link | 496,040 | 2.07% | 1 | 1:08:15 |
| 9. | Shadowrun | 466,525 | 1.94% | 1 | 3:40:36 |
| 10. | Dragon Quest III: The Seeds of Salvation | 463,340 | 1.93% | 4 | 11:56:41 |
| 11. | Dragon Quest | 455,292 | 1.90% | 1 | 2:54:59 |
| 12. | Castlevania II: Simon's Quest | 379,124 | 1.58% | 1 | 1:17:15 |
| 13. | Teenage Mutant Ninja Turtles | 353,712 | 1.47% | 1 | 1:03:08 |
| 14. | The Legend of Zelda: Oracle of Ages | 346,463 | 1.44% | 3 | 0:00 |
| 15. | Duck Hunt | 329,917 | 1.38% | 1 | 28:09 |
| 16. | Crystalis | 324,200 | 1.35% | 2 | 2:20:11 |
| 17. | The Simpsons: Bart vs. the Space Mutants | 295,497 | 1.23% | 1 | 50:23 |
| 18. | Mega Man | 292,947 | 1.22% | 3 | 2:20:05 |
| 19. | Super Mario Bros. 2 | 273,937 | 1.14% | 1 | 1:07:58 |
| 20. | Battletoads | 269,889 | 1.12% | 2 | 59:47 |
| 21. | Dragon Quest II: Luminaries of the Legendary Line | 247,568 | 1.03% | 2 | 5:34:51 |
| 22. | Wizards & Warriors | 237,873 | 0.99% | 2 | 1:48:48 |
| 23. | Faxanadu | 237,126 | 0.99% | 1 | 1:36:11 |
| 24. | The Legend of Zelda: Link's Awakening | 220,728 | 0.92% | 2 | 5:06:38 |
| 25. | Mega Man 2 | 211,492 | 0.88% | 1 | 58:33 |
| 26. | Kid Icarus | 203,312 | 0.85% | 1 | 1:24:32 |
| 27. | Mega Man 3 | 200,316 | 0.83% | 1 | 1:19:06 |
| 28. | Castlevania III: Dracula's Curse | 196,177 | 0.82% | 1 | 2:22:22 |
| 29. | ActRaiser | 189,340 | 0.79% | 2 | 2:36:49 |
| 30. | Blaster Master | 188,667 | 0.79% | 1 | 1:25:49 |
| 31. | Metal Gear | 186,209 | 0.78% | 1 | 1:17:42 |
| 32. | Friday the 13th | 185,108 | 0.77% | 1 | 38:00 |
| 33. | Maniac Mansion | 175,532 | 0.73% | 1 | 1:43:55 |
| 34. | The Magic of Scheherazade | 171,156 | 0.71% | 1 | 3:17:57 |
| 35. | StarTropics | 169,765 | 0.71% | 1 | 1:36:14 |
| 36. | Shadowgate | 168,466 | 0.70% | 2 | 1:48:01 |
| 37. | Willow | 165,381 | 0.69% | 1 | 2:26:15 |
| 38. | Bionic Commando | 158,518 | 0.66% | 1 | 1:02:53 |
| 39. | Castlevania | 156,429 | 0.65% | 1 | 34:58 |
| 40. | Final Fantasy Adventure | 147,842 | 0.62% | 2 | 4:33:04 |
| 41. | Super Mario Bros. | 144,808 | 0.60% | 3 | 1:10:06 |
| 42. | RYGAR | 141,300 | 0.59% | 1 | 46:12 |
| 43. | Super Castlevania IV | 140,459 | 0.59% | 2 | 1:47:24 |
| 44. | Double Dragon | 139,126 | 0.58% | 1 | 26:16 |
| 45. | Tiny Toon Adventures | 138,349 | 0.58% | 2 | 0:00 |
| 46. | Ninja Gaiden | 137,343 | 0.57% | 2 | 57:41 |
| 47. | Batman: The Video Game | 134,029 | 0.56% | 1 | 31:29 |
| 48. | DuckTales | 130,884 | 0.55% | 1 | 44:13 |
| 49. | Super Star Wars: The Empire Strikes Back | 130,645 | 0.54% | 2 | 1:49:17 |
| 50. | Fester's Quest | 127,595 | 0.53% | 1 | 1:01:08 |
| 51. | The Battle of Olympus | 126,907 | 0.53% | 1 | 1:33:26 |
| 52. | Legacy of the Wizard | 124,624 | 0.52% | 1 | 1:21:43 |
| 53. | Super Star Wars | 121,250 | 0.51% | 1 | 1:08:08 |
| 54. | Metroid II: Return of Samus | 118,483 | 0.49% | 1 | 2:05:23 |
| 55. | Mega Man 4 | 117,827 | 0.49% | 1 | 1:18:43 |
| 56. | Sonic the Hedgehog | 113,848 | 0.47% | 2 | 1:19:32 |
| 57. | The Guardian Legend | 113,753 | 0.47% | 1 | 2:33:49 |
| 58. | The Legend of Zelda: Oracle of Seasons | 111,889 | 0.47% | 2 | 0:00 |
| 59. | Snake's Revenge | 111,250 | 0.46% | 1 | 2:01:36 |
| 60. | Final Fantasy II | 110,226 | 0.46% | 2 | 4:08:10 |
| 61. | The Lone Ranger | 109,629 | 0.46% | 1 | 1:56:46 |
| 62. | G.I. Joe: A Real American Hero | 107,966 | 0.45% | 2 | 1:03:09 |
| 63. | Ghosts 'n Goblins | 107,756 | 0.45% | 1 | 29:57 |
| 64. | Star Fox | 107,588 | 0.45% | 2 | 0:00 |
| 65. | Super Punch-Out!! | 105,838 | 0.44% | 2 | 1:07:57 |
| 66. | Beyond Shadowgate | 105,230 | 0.44% | 1 | 2:49:25 |
| 67. | Mega Man 6 | 102,423 | 0.43% | 1 | 1:38:31 |
| 68. | A Nightmare on Elm Street | 101,424 | 0.42% | 1 | 47:53 |
| 69. | The Adventures of Bayou Billy | 100,063 | 0.42% | 1 | 56:21 |
| 70. | Super Mario Kart | 98,698 | 0.41% | 1 | 1:10:33 |
| 71. | The Goonies II | 97,588 | 0.41% | 1 | 48:14 |
| 72. | Donkey Kong Country | 97,553 | 0.41% | 2 | 0:00 |
| 73. | Castlevania: Bloodlines | 97,074 | 0.40% | 1 | 2:13:43 |
| 74. | Super Star Wars: Return of the Jedi | 96,976 | 0.40% | 1 | 1:44:11 |
| 75. | Adventure Island II | 93,497 | 0.39% | 2 | 0:00 |
| 76. | Teenage Mutant Ninja Turtles: Turtles in Time | 92,326 | 0.38% | 1 | 59:56 |
| 77. | Super Contra | 92,085 | 0.38% | 1 | 30:02 |
| 78. | Zoda's Revenge: StarTropics II | 91,766 | 0.38% | 1 | 2:04:04 |
| 79. | The Revenge of Shinobi | 90,800 | 0.38% | 1 | 55:23 |
| 80. | Contra | 89,550 | 0.37% | 2 | 32:28 |
| 81. | River City Ransom | 89,030 | 0.37% | 1 | 54:57 |
| 82. | Mega Man X | 88,916 | 0.37% | 2 | 0:00 |
| 83. | Double Dragon II | 86,450 | 0.36% | 1 | 34:51 |
| 84. | Streets of Rage | 83,260 | 0.35% | 2 | 1:15:15 |
| 85. | Clash at Demonhead | 83,006 | 0.35% | 1 | 1:24:51 |
| 86. | Ninja Gaiden II: The Dark Sword of Chaos | 79,325 | 0.33% | 1 | 1:09:16 |
| 87. | Bucky O'Hare | 78,706 | 0.33% | 2 | 1:06:29 |
| 88. | Adventure Island | 78,476 | 0.33% | 1 | 1:27:19 |
| 89. | Super Mario Land | 77,276 | 0.32% | 2 | 53:32 |
| 90. | Little Nemo: The Dream Master | 76,580 | 0.32% | 1 | 47:11 |
| 91. | A Boy and His Blob: Trouble on Blobolonia | 76,510 | 0.32% | 1 | 43:44 |
| 92. | Uninvited | 76,440 | 0.32% | 1 | 1:42:31 |
| 93. | Double Dragon III: The Sacred Stones | 73,205 | 0.31% | 1 | 39:15 |
| 94. | Disney's Aladdin | 70,994 | 0.30% | 1 | 1:04:39 |
| 95. | Final Fight | 70,562 | 0.29% | 1 | 1:05:03 |
| 96. | Darkwing Duck | 68,905 | 0.29% | 2 | 53:33 |
| 97. | The Simpsons: Bart vs. the World | 65,862 | 0.27% | 1 | 53:34 |
| 98. | Jackal | 65,270 | 0.27% | 1 | 44:24 |
| 99. | Battletoads/Double Dragon | 64,731 | 0.27% | 1 | 50:28 |
| 100. | Strider | 64,446 | 0.27% | 1 | 1:01:54 |
