| 1. | Super Mario World 2: Yoshi's Island | 2,918,885 | 12.62% | 152 | 1:01:42:32 |
| 2. | International Superstar Soccer Deluxe | 1,579,628 | 6.83% | 5 | 1:07:29 |
| 3. | Super Mario World | 1,578,975 | 6.83% | 623 | 5:03:40:47 |
| 4. | Yoshi's Island DS | 1,331,230 | 5.76% | 41 | 7:41:39 |
| 5. | Mega Man X | 1,023,106 | 4.42% | 14 | 3:06:20 |
| 6. | Super Mario Bros. 3 | 785,948 | 3.40% | 88 | 22:44:51 |
| 7. | Kirby's Adventure | 680,403 | 2.94% | 19 | 3:46:12 |
| 8. | Circus Charlie | 585,198 | 2.53% | 8 | 1:09:08 |
| 9. | Wario Land II | 499,824 | 2.16% | 58 | 7:12:07 |
| 10. | Earthworm Jim 2 | 441,539 | 1.91% | 8 | 57:11 |
| 11. | Sonic the Hedgehog | 438,078 | 1.89% | 24 | 4:17:10 |
| 12. | Mega Man X3 | 387,672 | 1.68% | 14 | 1:41:49 |
| 13. | Super Bomberman 2 | 319,357 | 1.38% | 15 | 2:17:41 |
| 14. | Earthworm Jim | 306,872 | 1.33% | 8 | 1:01:44 |
| 15. | Super Mario Bros. | 303,420 | 1.31% | 43 | 7:13:59 |
| 16. | Donkey Kong Country | 302,703 | 1.31% | 43 | 13:41:33 |
| 17. | Donkey Kong Country 3 | 297,818 | 1.29% | 36 | 8:32:14 |
| 18. | Wario Land 3 | 280,890 | 1.21% | 36 | 5:24:10 |
| 19. | Super Bomberman 4 | 266,947 | 1.15% | 6 | 46:18 |
| 20. | Donkey Kong Land | 241,845 | 1.05% | 9 | 1:10:11 |
| 21. | Super Mario Bros. 2 | 241,733 | 1.05% | 55 | 10:47:44 |
| 22. | Mario Bros. | 228,284 | 0.99% | 36 | 5:28:42 |
| 23. | Donkey Kong Country 2 | 228,133 | 0.99% | 59 | 17:33:48 |
| 24. | Super Bomberman 3 | 225,300 | 0.97% | 22 | 4:59:17 |
| 25. | Contra | 201,594 | 0.87% | 16 | 3:34:09 |
| 26. | Mario Is Missing! | 195,231 | 0.84% | 16 | 2:27:30 |
| 27. | Mortal Kombat II | 182,163 | 0.79% | 37 | 8:44:30 |
| 28. | Mega Man X2 | 179,155 | 0.77% | 14 | 1:30:41 |
| 29. | Super Bomberman 5 | 174,579 | 0.75% | 5 | 35:23 |
| 30. | Dr. Mario World | 159,422 | 0.69% | 20 | 2:34:41 |
| 31. | Super Adventure Island | 157,032 | 0.68% | 12 | 1:30:49 |
| 32. | Jazz Jackrabbit 2 | 147,941 | 0.64% | 25 | 3:21:16 |
| 33. | Mortal Kombat 3 | 147,375 | 0.64% | 8 | 1:29:29 |
| 34. | Wario Land: Super Mario Land 3 | 142,902 | 0.62% | 22 | 3:08:56 |
| 35. | Final Fight | 123,128 | 0.53% | 7 | 2:19:48 |
| 36. | Alex Kidd in Miracle World | 111,678 | 0.48% | 5 | 34:09 |
| 37. | Jazz Jackrabbit | 111,647 | 0.48% | 45 | 12:10:19 |
| 38. | Donkey Kong Land 2 | 108,121 | 0.47% | 20 | 2:37:34 |
| 39. | Captain Commando | 105,064 | 0.45% | 4 | 29:58 |
| 40. | Neo Bomberman | 98,305 | 0.42% | 6 | 57:53 |
| 41. | Ghouls 'n Ghosts | 95,697 | 0.41% | 5 | 1:15:36 |
| 42. | Super Bomberman | 93,966 | 0.41% | 11 | 2:08:56 |
| 43. | Mega Man & Bass | 84,375 | 0.36% | 27 | 7:36:46 |
| 44. | Mega Man IV | 82,941 | 0.36% | 21 | 4:27:32 |
| 45. | Donkey Kong Land III | 81,219 | 0.35% | 22 | 2:58:44 |
| 46. | Magic Sword | 80,436 | 0.35% | 7 | 1:47:05 |
| 47. | Final Fight Revenge | 78,189 | 0.34% | 1 | 3:01 |
| 48. | Bomberman '94 | 78,009 | 0.34% | 12 | 1:37:26 |
| 49. | Adventure Island | 75,452 | 0.33% | 24 | 4:25:51 |
| 50. | Pooyan | 73,550 | 0.32% | 1 | 2:07 |
| 51. | Cadillacs and Dinosaurs | 72,683 | 0.31% | 10 | 4:20:48 |
| 52. | Street Fighter | 70,544 | 0.30% | 5 | 45:39 |
| 53. | Mega Man 3 | 66,680 | 0.29% | 33 | 5:36:35 |
| 54. | Snow Bros. | 66,475 | 0.29% | 7 | 1:05:36 |
| 55. | Three Wonders | 64,854 | 0.28% | 6 | 54:37 |
| 56. | Carrier Air Wing | 64,362 | 0.28% | 6 | 44:39 |
| 57. | Knights of the Round | 63,026 | 0.27% | 5 | 37:02 |
| 58. | Ultimate Mortal Kombat 3 | 61,542 | 0.27% | 13 | 2:39:11 |
| 59. | Mega Man 7 | 61,030 | 0.26% | 21 | 3:27:54 |
| 60. | Mega Man | 56,844 | 0.25% | 31 | 9:53:18 |
| 61. | Sonic the Hedgehog 2 | 56,072 | 0.24% | 13 | 1:12:50 |
| 62. | Mega Man: The Power Battle | 56,037 | 0.24% | 5 | 1:06:30 |
| 63. | Super Mario Land 2: 6 Golden Coins | 54,457 | 0.24% | 15 | 3:18:33 |
| 64. | Mega Man V | 53,427 | 0.23% | 20 | 2:21:59 |
| 65. | Bomberman II | 52,907 | 0.23% | 9 | 1:04:34 |
| 66. | Bomberman '93 | 52,433 | 0.23% | 8 | 1:21:42 |
| 67. | G.I. Joe | 49,644 | 0.21% | 5 | 39:38 |
| 68. | Super Mario Bros.: The Lost Levels | 49,252 | 0.21% | 16 | 2:42:10 |
| 69. | Super Contra | 46,953 | 0.20% | 6 | 1:22:56 |
| 70. | Pokémon Red and Blue | 45,247 | 0.20% | 10 | 1:43:11 |
| 71. | Mega Man III | 44,988 | 0.19% | 9 | 1:47:12 |
| 72. | Puzz Loop | 43,891 | 0.19% | 1 | 6:00 |
| 73. | New Adventure Island | 42,822 | 0.19% | 7 | 43:12 |
| 74. | WarioWare, Inc.: Mega Microgames! | 41,835 | 0.18% | 7 | 1:00:36 |
| 75. | The King of Dragons | 40,905 | 0.18% | 6 | 1:32:31 |
| 76. | Mega Man II | 40,439 | 0.17% | 8 | 2:10:03 |
| 77. | Tumblepop | 39,084 | 0.17% | 6 | 55:48 |
| 78. | Mortal Kombat | 38,161 | 0.16% | 12 | 2:55:55 |
| 79. | Buster Bros. | 37,679 | 0.16% | 1 | 2:07 |
| 80. | Bomberman | 36,776 | 0.16% | 9 | 1:20:09 |
| 81. | Mortal Kombat Trilogy | 36,721 | 0.16% | 10 | 2:31:44 |
| 82. | Sonic the Hedgehog | 36,269 | 0.16% | 14 | 1:30:05 |
| 83. | Castle of Illusion Starring Mickey Mouse | 35,303 | 0.15% | 1 | 2:44 |
| 84. | Rail Chase 2 | 35,224 | 0.15% | 2 | 39:03 |
| 85. | Capcom Arcade Stadium | 34,998 | 0.15% | 12 | 1:27:59 |
| 86. | Mega Man X4 | 34,952 | 0.15% | 10 | 1:28:13 |
| 87. | 1942 | 34,803 | 0.15% | 2 | 13:03 |
| 88. | Super Mario 3D World | 33,745 | 0.15% | 19 | 5:42:00 |
| 89. | Contra III: The Alien Wars | 32,250 | 0.14% | 5 | 26:07 |
| 90. | Donkey Kong '94 | 32,134 | 0.14% | 42 | 7:34:38 |
| 91. | Dynamite Cop | 31,724 | 0.14% | 3 | 1:08:23 |
| 92. | WarioWare D.I.Y. | 30,508 | 0.13% | 5 | 1:32:18 |
| 93. | Mega Man 2 | 30,453 | 0.13% | 19 | 5:20:42 |
| 94. | Strider | 29,705 | 0.13% | 5 | 1:39:07 |
| 95. | Super Spacefortress Macross | 29,500 | 0.13% | 1 | 23:01 |
| 96. | The House of the Dead | 28,527 | 0.12% | 3 | 34:05 |
| 97. | Mega Man 6 | 27,014 | 0.12% | 15 | 5:19:50 |
| 98. | Mortal Kombat 9 | 26,616 | 0.12% | 23 | 5:30:29 |
| 99. | Ninja Combat | 26,440 | 0.11% | 7 | 1:16:16 |
| 100. | Mega Twins | 26,360 | 0.11% | 8 | 1:13:03 |
