| 1. | Super Mario World 2: Yoshi's Island | 2,116,275 | 17.91% | 57 | 4:28:58 |
| 2. | Mario & Luigi: Bowser's Inside Story | 1,712,612 | 14.50% | 20 | 2:39:46 |
| 3. | Mega Man ZX | 537,695 | 4.55% | 16 | 1:38:37 |
| 4. | Shovel Knight | 363,446 | 3.08% | 81 | 12:23:30 |
| 5. | Trials of Mana | 286,779 | 2.43% | 29 | 3:11:06 |
| 6. | Metal Slug Advance | 264,273 | 2.24% | 11 | 58:31 |
| 7. | Mega Man Zero 3 | 262,636 | 2.22% | 4 | 20:47 |
| 8. | Super Mario RPG | 228,842 | 1.94% | 29 | 3:56:44 |
| 9. | Undertale | 212,998 | 1.80% | 28 | 8:59:50 |
| 10. | Mario & Luigi: Partners in Time | 204,760 | 1.73% | 11 | 1:33:14 |
| 11. | Castlevania: Order of Ecclesia | 201,659 | 1.71% | 27 | 3:19:36 |
| 12. | Castlevania: Dawn of Sorrow | 199,418 | 1.69% | 21 | 4:10:41 |
| 13. | Final Fantasy Tactics Advance | 180,202 | 1.53% | 1 | 14:45 |
| 14. | Chrono Trigger | 164,572 | 1.39% | 45 | 5:43:12 |
| 15. | Mega Man ZX Advent | 156,835 | 1.33% | 32 | 3:11:07 |
| 16. | Castlevania: Portrait of Ruin | 153,761 | 1.30% | 36 | 6:49:46 |
| 17. | Mega Man Battle Network 4 | 134,111 | 1.14% | 4 | 11:20 |
| 18. | Summon Night: Swordcraft Story 2 | 131,945 | 1.12% | 1 | 10:31 |
| 19. | Mario & Luigi: Superstar Saga | 109,096 | 0.92% | 24 | 1:30:31 |
| 20. | Cave Story | 108,560 | 0.92% | 16 | 2:18:38 |
| 21. | Mega Man Zero 4 | 88,877 | 0.75% | 3 | 31:29 |
| 22. | Danny Phantom: Urban Jungle | 84,465 | 0.71% | 6 | 17:55 |
| 23. | Mega Man Battle Network 6 | 84,033 | 0.71% | 9 | 34:41 |
| 24. | Fire Emblem | 75,475 | 0.64% | 84 | 1:17:00:37 |
| 25. | Medabots | 72,250 | 0.61% | 2 | 13:56 |
| 26. | Summon Night Craft Sword Monogatari: Hajimari no Ishi | 72,081 | 0.61% | 11 | 1:03:26 |
| 27. | Sanctum 2 | 59,497 | 0.50% | 79 | 1:00:50:47 |
| 28. | Klonoa 2: Dream Champ Tournament | 51,121 | 0.43% | 45 | 3:10:54 |
| 29. | Riviera: The Promised Land | 50,840 | 0.43% | 3 | 31:17 |
| 30. | Streets of Rage Remake | 47,369 | 0.40% | 26 | 4:11:28 |
| 31. | Mega Man Battle Network 3 | 46,461 | 0.39% | 4 | 10:21 |
| 32. | Orcs Must Die! | 46,399 | 0.39% | 141 | 1:07:00:28 |
| 33. | Summon Night: Swordcraft Story | 38,772 | 0.33% | 1 | 8:46 |
| 34. | Mega Man Battle Network 5 | 36,826 | 0.31% | 2 | 12:23 |
| 35. | Shantae and the Pirate's Curse | 36,695 | 0.31% | 14 | 1:54:09 |
| 36. | Super Smash Bros. Ultimate | 34,653 | 0.29% | 1 | 9:22 |
| 37. | Fire Emblem: The Binding Blade | 34,430 | 0.29% | 40 | 21:05:41 |
| 38. | The Haunted Mansion | 33,442 | 0.28% | 1 | 10:22 |
| 39. | Super Ghouls 'n Ghosts | 28,854 | 0.24% | 17 | 3:08:02 |
| 40. | Super Bomberman 5 | 28,723 | 0.24% | 1 | 7:01 |
| 41. | Breath of Fire II | 28,566 | 0.24% | 4 | 17:37 |
| 42. | Astro Boy: Omega Factor | 26,564 | 0.22% | 17 | 3:49:48 |
| 43. | CT Special Forces | 25,260 | 0.21% | 21 | 1:51:37 |
| 44. | Glory of Heracles | 24,069 | 0.20% | 22 | 4:36:59 |
| 45. | Final Fight 3 | 20,505 | 0.17% | 7 | 1:00:46 |
| 46. | Mighty Switch Force! | 20,144 | 0.17% | 28 | 1:33:29 |
| 47. | The Legend of Zelda: The Minish Cap | 19,453 | 0.16% | 16 | 3:44:36 |
| 48. | Mega Man 7 | 19,136 | 0.16% | 3 | 35:29 |
| 49. | Mega Man Zero 2 | 18,969 | 0.16% | 4 | 12:32 |
| 50. | Solatorobo: Red the Hunter | 18,315 | 0.16% | 91 | 18:29:53 |
| 51. | Fire Emblem: The Sacred Stones | 16,897 | 0.14% | 35 | 23:38:37 |
| 52. | Skate 2 | 16,872 | 0.14% | 6 | 57:22 |
| 53. | Orcs Must Die! 2 | 16,407 | 0.14% | 70 | 15:38:20 |
| 54. | Mighty Morphin Power Rangers | 15,762 | 0.13% | 1 | 53:06 |
| 55. | Ragnarok Battle Offline | 15,371 | 0.13% | 21 | 4:47:11 |
| 56. | Summon Night: Twin Age | 14,193 | 0.12% | 1 | 19:53 |
| 57. | Battletoads/Double Dragon | 14,016 | 0.12% | 7 | 39:57 |
| 58. | CT Special Forces: Back to Hell | 12,498 | 0.11% | 22 | 1:24:54 |
| 59. | Contra III: The Alien Wars | 12,420 | 0.11% | 6 | 39:37 |
| 60. | Shantae: Risky's Revenge | 10,248 | 0.09% | 1 | 11:43 |
| 61. | 20XX | 10,216 | 0.09% | 27 | 19:27:09 |
| 62. | Mega Man & Bass | 9,477 | 0.08% | 23 | 2:29:50 |
| 63. | Earthworm Jim 2 | 9,266 | 0.08% | 12 | 1:20:02 |
| 64. | Mega Man Zero | 9,220 | 0.08% | 15 | 50:07 |
| 65. | Terraria | 8,399 | 0.07% | 5 | 57:55 |
| 66. | Teenage Mutant Ninja Turtles: Turtles in Time | 8,163 | 0.07% | 11 | 57:19 |
| 67. | Castlevania: Dracula X | 7,998 | 0.07% | 8 | 47:59 |
| 68. | Orcs Must Die! 3 | 6,954 | 0.06% | 13 | 4:33:24 |
| 69. | Rocket Knight Adventures | 6,511 | 0.06% | 7 | 56:03 |
| 70. | Mega Man X | 5,745 | 0.05% | 14 | 1:06:52 |
| 71. | Mega Man X2 | 5,695 | 0.05% | 14 | 1:09:38 |
| 72. | Mega Man Battle Network 2 | 5,194 | 0.04% | 1 | 2:44 |
| 73. | Goof Troop | 5,136 | 0.04% | 5 | 48:13 |
| 74. | Blaster Master Zero 2 | 5,007 | 0.04% | 14 | 4:39:18 |
| 75. | Castlevania: Aria of Sorrow | 4,542 | 0.04% | 15 | 2:07:50 |
| 76. | Land of Illusion Starring Mickey Mouse | 4,466 | 0.04% | 15 | 56:59 |
| 77. | Mega Man 8 | 4,405 | 0.04% | 15 | 2:10:06 |
| 78. | Black Sigil: Blade of the Exiled | 4,222 | 0.04% | 1 | 14:28 |
| 79. | Super Mario Bros. 3 | 4,133 | 0.03% | 8 | 2:00:32 |
| 80. | Super Mario World | 4,065 | 0.03% | 14 | 49:34 |
| 81. | Gunstar Heroes | 4,044 | 0.03% | 2 | 12:58 |
| 82. | Seiken Densetsu 3 | 3,537 | 0.03% | 1 | 4:46 |
| 83. | Radiant Historia | 3,534 | 0.03% | 1 | 20:38 |
| 84. | Dragon Ball: Advanced Adventure | 3,137 | 0.03% | 16 | 1:38:24 |
| 85. | Blaster Master Zero | 3,130 | 0.03% | 9 | 27:17 |
| 86. | Dead Rising 2 | 3,078 | 0.03% | 2 | 20:40 |
| 87. | The Ninja Warriors | 3,009 | 0.03% | 3 | 2:51:14 |
| 88. | Mega Man X3 | 2,535 | 0.02% | 15 | 1:21:45 |
| 89. | Super Castlevania IV | 2,502 | 0.02% | 5 | 28:16 |
| 90. | Besiege | 2,392 | 0.02% | 25 | 16:58 |
| 91. | Medabots AX | 2,350 | 0.02% | 15 | 2:53:01 |
| 92. | BioMetal | 2,195 | 0.02% | 1 | 5:30 |
| 93. | Bomberman B-Daman | 1,869 | 0.02% | 10 | 36:20 |
| 94. | Congo's Caper | 1,680 | 0.01% | 7 | 43:58 |
| 95. | Mark of the Ninja | 1,481 | 0.01% | 11 | 1:15:33 |
| 96. | Blackthorne | 1,419 | 0.01% | 4 | 1:45:47 |
| 97. | Ninja Five-O | 1,278 | 0.01% | 4 | 38:26 |
| 98. | Ghouls 'n Ghosts | 1,266 | 0.01% | 3 | 2:12:25 |
| 99. | Mighty Morphin Power Rangers: The Movie | 1,190 | 0.01% | 1 | 1:00:00 |
| 100. | The Messenger | 1,179 | 0.01% | 3 | 2:15:29 |
