| 1. | Clock Tower | 1,205,527 | 45.35% | 4 | 35:42 |
| 2. | Moon Cresta | 274,067 | 10.31% | 2 | 16:39 |
| 3. | Star Fox | 170,200 | 6.40% | 1 | 9:41 |
| 4. | Cho Aniki | 97,292 | 3.66% | 1 | 7:58 |
| 5. | Kirby's Dream Land | 74,948 | 2.82% | 1 | 25:40 |
| 6. | Raiden II | 37,566 | 1.41% | 1 | 12:04 |
| 7. | Star Force | 37,106 | 1.40% | 1 | 5:49 |
| 8. | Xevious | 35,922 | 1.35% | 1 | 9:19 |
| 9. | Space Harrier | 33,932 | 1.28% | 1 | 9:57 |
| 10. | Stinger | 33,701 | 1.27% | 1 | 7:42 |
| 11. | Salamander | 25,766 | 0.97% | 3 | 27:22 |
| 12. | RayForce | 25,379 | 0.95% | 1 | 7:15 |
| 13. | Galaxian | 23,874 | 0.90% | 1 | 7:44 |
| 14. | Scramble Formation | 21,166 | 0.80% | 1 | 8:54 |
| 15. | Aero Fighters | 20,121 | 0.76% | 4 | 29:50 |
| 16. | Commando | 19,048 | 0.72% | 1 | 8:16 |
| 17. | DonPachi | 18,735 | 0.70% | 2 | 11:02 |
| 18. | Fighter's History | 17,678 | 0.67% | 8 | 5:37:21 |
| 19. | Puzzle Bobble 4 | 14,876 | 0.56% | 2 | 1:38:53 |
| 20. | Tiger-Heli | 14,175 | 0.53% | 1 | 7:32 |
| 21. | DoDonPachi | 14,138 | 0.53% | 2 | 1:01:41 |
| 22. | Sqoon | 12,689 | 0.48% | 1 | 8:00 |
| 23. | Vulcan Venture | 12,614 | 0.47% | 2 | 15:50 |
| 24. | Space Invaders | 12,458 | 0.47% | 2 | 19:54 |
| 25. | Gyrodine | 10,575 | 0.40% | 1 | 10:00 |
| 26. | Contra III: The Alien Wars | 10,508 | 0.40% | 2 | 55:06 |
| 27. | Zanac | 10,463 | 0.39% | 1 | 7:29 |
| 28. | 1943: The Battle of Midway | 10,169 | 0.38% | 1 | 8:08 |
| 29. | Mushihimesama | 9,761 | 0.37% | 1 | 10:50 |
| 30. | HyperZone | 9,741 | 0.37% | 1 | 32:44 |
| 31. | Syvalion | 9,521 | 0.36% | 1 | 10:01 |
| 32. | Super Contra | 9,362 | 0.35% | 1 | 13:09 |
| 33. | Strikers 1945 | 8,634 | 0.32% | 2 | 1:05:11 |
| 34. | Yoshi's Cookie | 7,735 | 0.29% | 10 | 7:54:17 |
| 35. | Bio-Hazard Battle | 7,667 | 0.29% | 1 | 13:55 |
| 36. | Air Zonk | 7,618 | 0.29% | 1 | 6:05 |
| 37. | Raiden | 6,543 | 0.25% | 1 | 7:22 |
| 38. | The Mysterious Murasame Castle | 6,032 | 0.23% | 1 | 9:05 |
| 39. | R-Type II | 5,902 | 0.22% | 1 | 8:02 |
| 40. | Super Mario Bros. 3 | 5,056 | 0.19% | 1 | 19:29 |
| 41. | Yoshi | 5,014 | 0.19% | 1 | 15:51 |
| 42. | Mr. Heli | 4,812 | 0.18% | 1 | 9:07 |
| 43. | B-Wings | 4,806 | 0.18% | 1 | 8:22 |
| 44. | Darius | 4,337 | 0.16% | 2 | 52:56 |
| 45. | Night Striker | 4,280 | 0.16% | 1 | 9:36 |
| 46. | Wario's Woods | 4,254 | 0.16% | 8 | 8:35:22 |
| 47. | Buster Bros. | 4,215 | 0.16% | 1 | 14:47 |
| 48. | Cloud Master | 4,150 | 0.16% | 1 | 8:32 |
| 49. | Master of Weapon | 4,110 | 0.15% | 1 | 10:01 |
| 50. | Puyo Puyo Sun | 3,956 | 0.15% | 6 | 6:44:03 |
| 51. | Insector X | 3,458 | 0.13% | 1 | 11:39 |
| 52. | Gley Lancer | 3,356 | 0.13% | 1 | 9:51 |
| 53. | Bomberman 64 | 3,200 | 0.12% | 4 | 2:25:58 |
| 54. | Super Bomberman 2 | 3,127 | 0.12% | 6 | 5:38:04 |
| 55. | Super Tetris 2: Bombliss | 3,109 | 0.12% | 1 | 34:12 |
| 56. | Megablast | 2,679 | 0.10% | 1 | 8:00 |
| 57. | R-Type | 2,465 | 0.09% | 3 | 3:08:07 |
| 58. | KiKi KaiKai | 2,374 | 0.09% | 1 | 7:53 |
| 59. | Street Fighter II | 2,284 | 0.09% | 16 | 10:28:52 |
| 60. | Cyber Troopers Virtual-On Oratorio Tangram | 2,214 | 0.08% | 1 | 3:20:28 |
| 61. | Super Mario Kart | 2,136 | 0.08% | 6 | 5:14:03 |
| 62. | Tetris 2 | 2,025 | 0.08% | 4 | 2:09:54 |
| 63. | Grid Seeker: Project Storm Hammer | 1,999 | 0.08% | 1 | 5:51 |
| 64. | Solar Striker | 1,983 | 0.07% | 2 | 1:13:07 |
| 65. | Tobal No. 1 | 1,825 | 0.07% | 2 | 1:36:47 |
| 66. | Powerball | 1,648 | 0.06% | 1 | 30:55 |
| 67. | Phelios | 1,619 | 0.06% | 1 | 9:06 |
| 68. | Kirby no Kirakira Kizzu | 1,330 | 0.05% | 12 | 6:47:40 |
| 69. | Panel de Pon | 1,317 | 0.05% | 11 | 9:24:24 |
| 70. | Super Mario All-Stars | 1,237 | 0.05% | 12 | 13:12:36 |
| 71. | Street Fighter: The Movie | 1,151 | 0.04% | 4 | 2:58:53 |
| 72. | Xardion | 1,118 | 0.04% | 1 | 2:00:30 |
| 73. | Sasa | 1,058 | 0.04% | 1 | 13:13 |
| 74. | Tag Team Match: M.U.S.C.L.E. | 1,042 | 0.04% | 4 | 3:03:25 |
| 75. | Virtua Fighter 2 | 964 | 0.04% | 6 | 11:08:50 |
| 76. | Princess Maker | 878 | 0.03% | 1 | 33:01 |
| 77. | Chelnov | 856 | 0.03% | 1 | 9:49 |
| 78. | Darius II | 768 | 0.03% | 1 | 10:01 |
| 79. | Joy Mech Fight | 710 | 0.03% | 8 | 4:27:07 |
| 80. | Kirby 64: The Crystal Shards | 703 | 0.03% | 10 | 3:00:15 |
| 81. | Puyo Puyo 2 | 670 | 0.03% | 5 | 4:38:13 |
| 82. | Mario Party 2 | 651 | 0.02% | 6 | 6:27:04 |
| 83. | Tetris Battle Gaiden | 623 | 0.02% | 1 | 1:30:33 |
| 84. | Teenage Mutant Ninja Turtles: Tournament Fighters | 618 | 0.02% | 2 | 2:10:34 |
| 85. | Arkanoid | 617 | 0.02% | 4 | 1:04:49 |
| 86. | Top Gun: The Second Mission | 612 | 0.02% | 1 | 40:06 |
| 87. | Baseball | 606 | 0.02% | 2 | 1:12:18 |
| 88. | Emeraldia | 584 | 0.02% | 1 | 31:21 |
| 89. | Guilty Gear Xrd | 561 | 0.02% | 11 | 8:13:11 |
| 90. | Twinkle Star Sprites | 557 | 0.02% | 13 | 7:28:12 |
| 91. | Popeye no Eigo Asobi | 552 | 0.02% | 7 | 4:35:12 |
| 92. | Nage Libre: Seijaku no Suishin | 540 | 0.02% | 5 | 10:48:42 |
| 93. | Super Volleyball | 536 | 0.02% | 1 | 8:18 |
| 94. | Palamedes | 515 | 0.02% | 4 | 2:32:25 |
| 95. | Mega Man | 504 | 0.02% | 3 | 6:40:36 |
| 96. | Tetris | 485 | 0.02% | 2 | 46:55 |
| 97. | Dream Club | 476 | 0.02% | 20 | 2:04:28:21 |
| 98. | Super Bomberman 4 | 457 | 0.02% | 1 | 20:08 |
| 99. | Fighting Vipers | 446 | 0.02% | 1 | 21:21 |
| 100. | Samurai Deeper Kyo | 436 | 0.02% | 1 | 1:03:16 |
