| 1. | Soulcalibur III | 6,024,093 | 9.66% | 48 | 51:37 |
| 2. | Sonic Riders | 5,855,560 | 9.39% | 124 | 3:00:43 |
| 3. | Donkey Kong Country | 3,496,194 | 5.61% | 2 | 4:10:35 |
| 4. | The Legend of Zelda: A Link to the Past | 3,137,196 | 5.03% | 1 | 4:13:13 |
| 5. | Shadow the Hedgehog | 2,973,082 | 4.77% | 12 | 1:22:09 |
| 6. | Donkey Kong Country 2 | 2,730,219 | 4.38% | 1 | 2:36:45 |
| 7. | Super Mario World | 2,315,296 | 3.71% | 1 | 2:24:15 |
| 8. | Donkey Kong Country 3 | 1,998,557 | 3.21% | 1 | 3:21:44 |
| 9. | Super Metroid | 1,663,855 | 2.67% | 1 | 2:11:43 |
| 10. | Super Mario World 2: Yoshi's Island | 1,229,990 | 1.97% | 2 | 5:33:56 |
| 11. | Super Mario Bros. 3 | 1,174,565 | 1.88% | 1 | 2:28:18 |
| 12. | Zelda II: The Adventure of Link | 1,087,828 | 1.75% | 2 | 4:11:41 |
| 13. | Contra III: The Alien Wars | 1,017,372 | 1.63% | 2 | 1:21:55 |
| 14. | Final Fantasy VI | 888,740 | 1.43% | 9 | 1:10:04:17 |
| 15. | Kirby Super Star | 789,427 | 1.27% | 5 | 9:50:35 |
| 16. | Crash Tag Team Racing | 766,448 | 1.23% | 2 | 8:55 |
| 17. | Contra 4 | 706,238 | 1.13% | 1 | 44:11 |
| 18. | Capcom vs. SNK 2 | 674,381 | 1.08% | 1 | 10:30 |
| 19. | Mighty Morphin Power Rangers | 634,159 | 1.02% | 1 | 47:10 |
| 20. | The Legend of Zelda | 627,733 | 1.01% | 16 | 7:41:02 |
| 21. | Spider-Man and the X-Men in Arcade's Revenge | 571,629 | 0.92% | 2 | 1:18:19 |
| 22. | Super Mario Bros. 2 | 567,895 | 0.91% | 1 | 1:02:12 |
| 23. | Secret of Mana | 553,419 | 0.89% | 15 | 1:01:45:53 |
| 24. | Donkey Kong | 541,011 | 0.87% | 4 | 2:23:21 |
| 25. | Super Mario Advance | 494,579 | 0.79% | 2 | 2:36:25 |
| 26. | Earthbound | 428,394 | 0.69% | 3 | 10:38:32 |
| 27. | Dynasty Warriors 3 | 389,316 | 0.62% | 1 | 6:06 |
| 28. | Tail Concerto | 380,385 | 0.61% | 13 | 13:31 |
| 29. | Metroid Fusion | 345,670 | 0.55% | 1 | 2:43:32 |
| 30. | Sly 3: Honor Among Thieves | 338,465 | 0.54% | 1 | 3:55 |
| 31. | Metroid: Zero Mission | 333,273 | 0.53% | 2 | 3:54:45 |
| 32. | Chrono Trigger | 311,362 | 0.50% | 2 | 11:09:53 |
| 33. | Resident Evil Gaiden | 298,428 | 0.48% | 1 | 1:46:19 |
| 34. | Star Fox 2 | 287,939 | 0.46% | 1 | 52:21 |
| 35. | Super Mario Bros. | 244,793 | 0.39% | 8 | 4:01:28 |
| 36. | Final Fantasy II | 239,607 | 0.38% | 4 | 14:15:14 |
| 37. | Super Godzilla | 234,825 | 0.38% | 1 | 1:28:13 |
| 38. | Spider-Man and Venom: Maximum Carnage | 234,808 | 0.38% | 1 | 54:36 |
| 39. | Super Mario RPG | 227,736 | 0.37% | 2 | 8:22:52 |
| 40. | Devil May Cry 4 | 216,977 | 0.35% | 1 | 4:31 |
| 41. | Illusion of Gaia | 207,342 | 0.33% | 3 | 7:10:28 |
| 42. | Super Ghouls 'n Ghosts | 198,128 | 0.32% | 3 | 2:37:06 |
| 43. | Ghostbusters II | 194,049 | 0.31% | 1 | 21:41 |
| 44. | Batman Returns | 189,417 | 0.30% | 1 | 49:35 |
| 45. | The Lost Vikings | 182,705 | 0.29% | 1 | 2:23:31 |
| 46. | The Legend of Zelda: Link's Awakening | 181,690 | 0.29% | 2 | 5:32:26 |
| 47. | Super Punch-Out!! | 179,444 | 0.29% | 1 | 31:42 |
| 48. | Feel the Magic: XY/XX | 174,814 | 0.28% | 1 | 1:21:52 |
| 49. | Demon's Crest | 172,219 | 0.28% | 1 | 1:53:30 |
| 50. | Secret of Evermore | 171,771 | 0.28% | 2 | 6:48:19 |
| 51. | Prehistorik Man | 169,706 | 0.27% | 1 | 1:32:44 |
| 52. | Shaman King: Master of Spirits | 168,769 | 0.27% | 1 | 4:03:02 |
| 53. | Super Mario Land | 164,524 | 0.26% | 2 | 1:07:06 |
| 54. | Castlevania: Circle of the Moon | 160,081 | 0.26% | 5 | 17:11:06 |
| 55. | Sly 2: Band of Thieves | 159,299 | 0.26% | 1 | 3:17 |
| 56. | Castlevania II: Simon's Quest | 154,657 | 0.25% | 2 | 2:11:03 |
| 57. | Wai Wai World | 152,496 | 0.24% | 2 | 2:37:49 |
| 58. | Shadow Hearts: Covenant | 151,150 | 0.24% | 13 | 29:24 |
| 59. | Disney's Aladdin | 151,055 | 0.24% | 1 | 46:28 |
| 60. | Demon Sword | 144,832 | 0.23% | 2 | 1:16:22 |
| 61. | Star Fox | 142,446 | 0.23% | 3 | 2:03:35 |
| 62. | Mega Man X | 135,950 | 0.22% | 1 | 1:23:21 |
| 63. | E.V.O.: Search for Eden | 131,994 | 0.21% | 1 | 2:32:11 |
| 64. | Soulcalibur VI | 128,753 | 0.21% | 1 | 1:22 |
| 65. | ActRaiser | 122,047 | 0.20% | 1 | 3:01:01 |
| 66. | Sonic the Hedgehog | 114,969 | 0.18% | 5 | 3:34:19 |
| 67. | Norse by Norse West: The Return of the Lost Vikings | 113,174 | 0.18% | 1 | 2:46:40 |
| 68. | Shantae | 112,655 | 0.18% | 1 | 3:56:05 |
| 69. | Metroid | 112,065 | 0.18% | 2 | 2:33:00 |
| 70. | The Batman | 111,477 | 0.18% | 1 | 1:21:29 |
| 71. | Prince of Persia | 109,356 | 0.18% | 1 | 1:19:38 |
| 72. | Super Double Dragon | 107,295 | 0.17% | 1 | 56:10 |
| 73. | Shaman King: Master of Spirits 2 | 106,685 | 0.17% | 1 | 3:27:22 |
| 74. | X-Men: Mutant Apocalypse | 99,292 | 0.16% | 1 | 52:56 |
| 75. | Battletoads/Double Dragon | 93,987 | 0.15% | 4 | 3:01:07 |
| 76. | Beavis and Butt-Head | 92,662 | 0.15% | 1 | 31:02 |
| 77. | Sailor Moon | 92,116 | 0.15% | 5 | 3:54:21 |
| 78. | New Ghostbusters II | 91,207 | 0.15% | 2 | 1:00:41 |
| 79. | Mega Man X3 | 90,680 | 0.15% | 1 | 1:48:51 |
| 80. | Mega Man 7 | 89,724 | 0.14% | 1 | 1:31:26 |
| 81. | Wolfenstein 3D | 89,560 | 0.14% | 2 | 3:33:43 |
| 82. | Castlevania III: Dracula's Curse | 84,690 | 0.14% | 4 | 3:02:09 |
| 83. | Front Mission Series: Gun Hazard | 82,870 | 0.13% | 3 | 11:45:05 |
| 84. | My Little Pony: Pinkie Pie's Party | 82,639 | 0.13% | 1 | 33:57 |
| 85. | The Death and Return of Superman | 81,810 | 0.13% | 1 | 1:14:41 |
| 86. | Bram Stoker's Dracula | 81,063 | 0.13% | 1 | 31:45 |
| 87. | Battletoads | 80,468 | 0.13% | 5 | 3:03:25 |
| 88. | Mega Man 2 | 79,180 | 0.13% | 2 | 1:43:04 |
| 89. | Metroid II: Return of Samus | 76,986 | 0.12% | 1 | 1:37:08 |
| 90. | Mega Man X2 | 76,457 | 0.12% | 1 | 1:27:59 |
| 91. | The Rub Rabbits! | 75,969 | 0.12% | 1 | 1:49:47 |
| 92. | The Jetsons: Invasion of the Planet Pirates | 73,780 | 0.12% | 2 | 1:50:17 |
| 93. | Super Star Wars: Return of the Jedi | 70,993 | 0.11% | 1 | 39:11 |
| 94. | Star Wars | 69,895 | 0.11% | 2 | 1:08:50 |
| 95. | Scooby-Doo! Classic Creep Capers | 69,895 | 0.11% | 1 | 59:07 |
| 96. | Bishoujo Senshi Sailor Moon: Another Story | 69,013 | 0.11% | 2 | 10:05:22 |
| 97. | Fester's Quest | 66,939 | 0.11% | 2 | 1:24:22 |
| 98. | Terranigma | 66,363 | 0.11% | 3 | 9:55:44 |
| 99. | Loom | 65,730 | 0.11% | 1 | 1:32:25 |
| 100. | Klonoa 2: Dream Champ Tournament | 65,579 | 0.11% | 1 | 3:15:45 |
