| 1. | Pokémon Ruby and Sapphire | 287,170 | 2.07% | 6 | 28:07 |
| 2. | Kirby's Adventure | 283,123 | 2.04% | 53 | 2:36:17 |
| 3. | Chrono Trigger | 229,209 | 1.66% | 194 | 14:26:28 |
| 4. | Final Fantasy VI | 211,288 | 1.53% | 190 | 18:25:27 |
| 5. | Final Fantasy | 178,147 | 1.29% | 214 | 15:25:20 |
| 6. | Pokémon Ranger | 167,398 | 1.21% | 1 | 6:44 |
| 7. | Before The Dawn | 136,816 | 0.99% | 1 | 5:13 |
| 8. | Pokémon Mystery Dungeon: Blue Rescue Team and Red Rescue Team | 84,344 | 0.61% | 1 | 8:37 |
| 9. | Pokémon FireRed and LeafGreen | 79,440 | 0.57% | 2 | 11:00 |
| 10. | Pokémon Gold and Silver | 53,264 | 0.38% | 3 | 5:39 |
| 11. | The Legend of Zelda | 37,741 | 0.27% | 51 | 3:26:10 |
| 12. | Quick, Draw! | 35,651 | 0.26% | 1 | 1:02 |
| 13. | Earthbound | 33,664 | 0.24% | 10 | 33:50 |
| 14. | Crystal Eyes | 32,047 | 0.23% | 1 | 4:12 |
| 15. | Pokémon Yellow | 31,866 | 0.23% | 1 | 6:56 |
| 16. | Super Mario Bros. 3 | 24,773 | 0.18% | 18 | 33:20 |
| 17. | Lufia II: Rise of the Sinistrals | 24,569 | 0.18% | 39 | 3:19:06 |
| 18. | Super Mario RPG | 24,362 | 0.18% | 55 | 4:11:38 |
| 19. | Super Mario World 2: Yoshi's Island | 21,596 | 0.16% | 1 | 3:09 |
| 20. | Tiny Toon Adventures | 20,605 | 0.15% | 1 | 5:43 |
| 21. | Final Exam | 20,532 | 0.15% | 1 | 5:16 |
| 22. | The Legend of Zelda: A Link to the Past | 19,460 | 0.14% | 51 | 4:20:49 |
| 23. | The Incredible Machine | 18,887 | 0.14% | 1 | 2:36 |
| 24. | Secret of Mana | 18,839 | 0.14% | 59 | 3:36:46 |
| 25. | Rolling Thunder | 18,607 | 0.13% | 1 | 5:36 |
| 26. | Rad Racer | 16,734 | 0.12% | 14 | 45:24 |
| 27. | Ikari Warriors II: Victory Road | 14,080 | 0.10% | 1 | 6:27 |
| 28. | Super Bust-A-Move | 13,417 | 0.10% | 2 | 5:52 |
| 29. | Super Mario Land | 12,589 | 0.09% | 1 | 3:02 |
| 30. | The Prophecy | 12,489 | 0.09% | 1 | 2:31 |
| 31. | The Race Against Time | 11,464 | 0.08% | 1 | 4:31 |
| 32. | Tetris | 11,288 | 0.08% | 53 | 2:07:19 |
| 33. | Dragon Quest V: Hand of the Heavenly Bride | 11,127 | 0.08% | 39 | 2:58:29 |
| 34. | Fire Emblem: The Binding Blade | 10,557 | 0.08% | 145 | 22:14:03 |
| 35. | Lufia: The Ruins of Lore | 10,379 | 0.07% | 1 | 6:05 |
| 36. | Super Mario Bros. | 9,865 | 0.07% | 15 | 56:28 |
| 37. | The Darkness | 9,430 | 0.07% | 1 | 7:42 |
| 38. | Mother 3 | 9,315 | 0.07% | 24 | 1:43:58 |
| 39. | The Legend of Zelda: Oracle of Ages | 9,215 | 0.07% | 90 | 7:51:02 |
| 40. | Super Mario Advance 4: Super Mario Bros. 3 | 8,426 | 0.06% | 5 | 6:56 |
| 41. | Dr. Mario | 8,219 | 0.06% | 3 | 12:49 |
| 42. | Dragon Quest III: The Seeds of Salvation | 7,997 | 0.06% | 44 | 4:17:08 |
| 43. | Rising Star - The Horse Game | 7,912 | 0.06% | 1 | 10:19 |
| 44. | NetHack | 7,757 | 0.06% | 17 | 1:13:59 |
| 45. | To The Rescue! | 7,637 | 0.06% | 2 | 8:18 |
| 46. | Onward | 7,352 | 0.05% | 3 | 15:54 |
| 47. | Tiny Toon Adventures 2: Montana's Movie Madness | 6,976 | 0.05% | 1 | 1:28 |
| 48. | Donkey Kong Country | 6,864 | 0.05% | 1 | 1:49 |
| 49. | Final Fantasy Mystic Quest | 6,862 | 0.05% | 45 | 2:31:41 |
| 50. | Sackboy: A Big Adventure | 6,831 | 0.05% | 1 | 6:00 |
| 51. | REmatch | 6,598 | 0.05% | 1 | 6:05 |
| 52. | Devastation | 5,880 | 0.04% | 1 | 9:30 |
| 53. | Bring It On! | 5,617 | 0.04% | 1 | 4:15 |
| 54. | The Forest | 5,496 | 0.04% | 1 | 5:48 |
| 55. | Final Fantasy Tactics Advance | 5,099 | 0.04% | 15 | 54:47 |
| 56. | Mystic Forest | 4,997 | 0.04% | 2 | 8:37 |
| 57. | Zelda II: The Adventure of Link | 4,895 | 0.04% | 19 | 1:33:57 |
| 58. | One Last Time | 4,827 | 0.03% | 1 | 5:44 |
| 59. | Little Things | 3,919 | 0.03% | 1 | 3:41 |
| 60. | Final Fantasy IV: The After Years | 3,892 | 0.03% | 3 | 11:10 |
| 61. | Flying High | 3,865 | 0.03% | 1 | 4:19 |
| 62. | Tales of Phantasia | 3,796 | 0.03% | 8 | 26:52 |
| 63. | Kid Icarus | 3,622 | 0.03% | 4 | 9:21 |
| 64. | Red Alert | 3,314 | 0.02% | 1 | 5:01 |
| 65. | Dragon Quest VI: Realms of Revelation | 3,063 | 0.02% | 19 | 1:37:10 |
| 66. | Super Mario World | 3,000 | 0.02% | 4 | 13:32 |
| 67. | Final Fantasy II | 2,939 | 0.02% | 2 | 7:22 |
| 68. | Yoshi's Cookie | 2,903 | 0.02% | 1 | 8:31 |
| 69. | Puzzle Bobble | 2,848 | 0.02% | 4 | 9:40 |
| 70. | Golden Sun: The Lost Age | 2,581 | 0.02% | 11 | 1:58:51 |
| 71. | Fired Up | 2,414 | 0.02% | 1 | 0:32 |
| 72. | Spiral Knights | 2,352 | 0.02% | 47 | 5:00:11 |
| 73. | Suikoden III | 2,336 | 0.02% | 1 | 3:29 |
| 74. | Spyro 2: Ripto's Rage! | 1,992 | 0.01% | 1 | 3:04 |
| 75. | Bubble Bobble | 1,976 | 0.01% | 6 | 26:48 |
| 76. | Arkanoid | 1,898 | 0.01% | 1 | 2:23 |
| 77. | Super Mario Bros. 2 | 1,897 | 0.01% | 2 | 2:26 |
| 78. | The Legend of Zelda: Ocarina of Time | 1,820 | 0.01% | 2 | 5:32 |
| 79. | Spyro: Year of the Dragon | 1,768 | 0.01% | 1 | 3:45 |
| 80. | Civilization | 1,686 | 0.01% | 1 | 4:23 |
| 81. | Illusion of Gaia | 1,650 | 0.01% | 21 | 1:07:26 |
| 82. | Pokémon Diamond and Pearl | 1,648 | 0.01% | 1 | 5:02 |
| 83. | Qix | 1,624 | 0.01% | 1 | 2:11 |
| 84. | Bejeweled 3 | 1,563 | 0.01% | 10 | 20:24 |
| 85. | Cabin Fever | 1,381 | 0.01% | 1 | 8:34 |
| 86. | Sword of Mana | 1,331 | 0.01% | 1 | 2:39 |
| 87. | The Pyramid | 1,321 | 0.01% | 3 | 12:00 |
| 88. | Way of the Samurai | 1,304 | 0.01% | 1 | 6:44 |
| 89. | The Cave | 1,201 | 0.01% | 1 | 8:43 |
| 90. | Interceptor | 1,156 | 0.01% | 1 | 8:28 |
| 91. | The Legend of Zelda: Link's Awakening | 1,025 | 0.01% | 15 | 1:31:23 |
| 92. | The New Tetris | 953 | 0.01% | 8 | 13:30 |
| 93. | Lufia & the Fortress of Doom | 934 | 0.01% | 1 | 2:04 |
| 94. | Danger Zone | 923 | 0.01% | 1 | 8:13 |
| 95. | Crazy Cars | 906 | 0.01% | 1 | 0:50 |
| 96. | Puzzle Bobble 4 | 779 | 0.01% | 1 | 0:27 |
| 97. | Golden Sun | 763 | 0.01% | 14 | 1:43:19 |
| 98. | R.C. Pro-Am | 686 | 0.00% | 1 | 2:16 |
| 99. | Pandemonium! | 684 | 0.00% | 1 | 7:52 |
| 100. | Trials of Mana | 669 | 0.00% | 4 | 16:13 |
