| 1. | Mega Man X3 | 1,618,500 | 16.44% | 60 | 4:44:07 |
| 2. | Pokémon FireRed and LeafGreen | 1,544,034 | 15.68% | 81 | 12:15:26 |
| 3. | Kirby: Nightmare in Dream Land | 631,829 | 6.42% | 4 | 1:32:02 |
| 4. | Kirby Super Star Ultra | 519,195 | 5.27% | 19 | 4:28:43 |
| 5. | Mega Man & Bass | 401,950 | 4.08% | 42 | 4:17:40 |
| 6. | Wario: Master of Disguise | 260,194 | 2.64% | 25 | 7:08:14 |
| 7. | Frogger 2: Swampy's Revenge | 252,636 | 2.57% | 13 | 2:54:24 |
| 8. | Mega Man 8 | 250,404 | 2.54% | 59 | 4:49:03 |
| 9. | Mega Man II | 189,293 | 1.92% | 8 | 46:50 |
| 10. | Mega Man 7 | 156,098 | 1.59% | 50 | 4:29:44 |
| 11. | Charlie and the Chocolate Factory | 144,600 | 1.47% | 16 | 2:12:15 |
| 12. | Bomberman Max 2 | 134,526 | 1.37% | 40 | 4:09:55 |
| 13. | Madagascar: Operation Penguin | 119,223 | 1.21% | 23 | 2:15:37 |
| 14. | Mega Man X2 | 110,328 | 1.12% | 28 | 2:03:25 |
| 15. | Frogger's Adventures: Temple of the Frog | 109,831 | 1.12% | 29 | 2:09:32 |
| 16. | Bomberman GB | 106,104 | 1.08% | 29 | 2:14:51 |
| 17. | Pocket Bomberman | 104,553 | 1.06% | 24 | 1:02:16 |
| 18. | Pokémon Emerald | 94,898 | 0.96% | 51 | 13:05:30 |
| 19. | Sonic Lost World | 77,833 | 0.79% | 15 | 3:33:35 |
| 20. | Spyro: Attack of the Rhynocs | 60,339 | 0.61% | 14 | 3:36:40 |
| 21. | Spyro 2: Season of Flame | 60,200 | 0.61% | 13 | 3:58:44 |
| 22. | Mega Man X8 | 54,825 | 0.56% | 39 | 3:20:31 |
| 23. | Sonic the Hedgehog 4: Episode I | 52,407 | 0.53% | 24 | 29:09 |
| 24. | Castlevania: Harmony of Dissonance | 50,118 | 0.51% | 24 | 4:42:13 |
| 25. | Earthworm Jim 2 | 49,096 | 0.50% | 10 | 30:52 |
| 26. | Street Fighter EX3 | 45,590 | 0.46% | 1 | 10:30 |
| 27. | Mario & Luigi: Partners in Time | 43,302 | 0.44% | 56 | 10:36:08 |
| 28. | Pokémon Platinum | 37,877 | 0.38% | 63 | 16:34:13 |
| 29. | Sonic Advance | 36,415 | 0.37% | 52 | 3:27:12 |
| 30. | Mega Man | 35,637 | 0.36% | 25 | 2:41:52 |
| 31. | Sonic Rush | 34,652 | 0.35% | 32 | 7:45:44 |
| 32. | Super Mario Advance 4: Super Mario Bros. 3 | 32,782 | 0.33% | 21 | 5:11:36 |
| 33. | Bomberman Max | 32,600 | 0.33% | 36 | 3:19:37 |
| 34. | Castlevania: Aria of Sorrow | 32,327 | 0.33% | 32 | 4:19:45 |
| 35. | Frogger's Journey: The Forgotten Relic | 29,514 | 0.30% | 12 | 3:09:58 |
| 36. | Sonic Advance 3 | 28,756 | 0.29% | 20 | 4:55:31 |
| 37. | Castlevania: Portrait of Ruin | 28,233 | 0.29% | 26 | 6:29:32 |
| 38. | Castlevania: Circle of the Moon | 26,800 | 0.27% | 18 | 3:37:04 |
| 39. | Bugdom | 25,083 | 0.25% | 7 | 1:15:20 |
| 40. | Mario & Luigi: Superstar Saga | 24,449 | 0.25% | 33 | 8:49:19 |
| 41. | Mega Man 2 | 24,000 | 0.24% | 10 | 2:09:53 |
| 42. | Mega Man IV | 22,877 | 0.23% | 13 | 1:26:16 |
| 43. | Mega Man Xtreme 2 | 22,389 | 0.23% | 21 | 1:45:34 |
| 44. | Mega Man Xtreme | 22,374 | 0.23% | 23 | 1:38:37 |
| 45. | Spyro: Year of the Dragon | 20,815 | 0.21% | 31 | 7:30:35 |
| 46. | Pokémon Crystal | 19,668 | 0.20% | 42 | 10:19:24 |
| 47. | Castlevania: Dawn of Sorrow | 19,665 | 0.20% | 46 | 7:41:03 |
| 48. | Mega Man X6 | 19,182 | 0.19% | 27 | 2:41:31 |
| 49. | Sonic CD | 18,939 | 0.19% | 7 | 51:49 |
| 50. | Super Mario World | 18,436 | 0.19% | 95 | 1:00:21:54 |
| 51. | Mega Man X5 | 18,377 | 0.19% | 39 | 5:05:57 |
| 52. | Spyro: Season of Ice | 17,964 | 0.18% | 15 | 3:16:54 |
| 53. | Super Princess Peach | 17,402 | 0.18% | 25 | 6:23:01 |
| 54. | Banjo-Kazooie | 16,359 | 0.17% | 21 | 5:34:52 |
| 55. | Pokémon Black 2 and White 2 | 16,134 | 0.16% | 71 | 17:52:07 |
| 56. | Super Mario World 2: Yoshi's Island | 15,973 | 0.16% | 17 | 36:03 |
| 57. | Pokémon Black and White | 15,947 | 0.16% | 60 | 15:10:16 |
| 58. | Frogger | 15,295 | 0.16% | 26 | 4:40:54 |
| 59. | Donkey Kong Land 2 | 15,003 | 0.15% | 18 | 4:45:49 |
| 60. | Lego Island 2: The Brickster's Revenge | 14,819 | 0.15% | 7 | 1:54:23 |
| 61. | Mega Man ZX Advent | 14,233 | 0.14% | 29 | 7:41:29 |
| 62. | The Legend of Zelda: Oracle of Seasons | 14,038 | 0.14% | 25 | 6:21:55 |
| 63. | Sonic Colors | 13,463 | 0.14% | 20 | 5:03:52 |
| 64. | DK: King of Swing | 12,565 | 0.13% | 11 | 1:55:59 |
| 65. | Super Mario Bros. | 11,436 | 0.12% | 27 | 4:38:46 |
| 66. | Yoshi's Island: Super Mario Advance 3 | 11,292 | 0.11% | 28 | 7:20:55 |
| 67. | Diddy Kong Racing | 11,214 | 0.11% | 19 | 3:57:49 |
| 68. | Mega Man III | 11,034 | 0.11% | 15 | 1:11:54 |
| 69. | Paper Mario: The Thousand-Year Door | 10,086 | 0.10% | 73 | 20:40:52 |
| 70. | Super Smash Bros. Ultimate | 9,790 | 0.10% | 58 | 12:43:02 |
| 71. | Mega Man X4 | 9,759 | 0.10% | 38 | 4:22:27 |
| 72. | The Legend of Zelda: Oracle of Ages | 9,656 | 0.10% | 32 | 8:37:52 |
| 73. | Wario Land II | 9,618 | 0.10% | 23 | 5:27:47 |
| 74. | Sonic Spinball | 9,579 | 0.10% | 3 | 52:02 |
| 75. | Kirby's Dream Land 3 | 8,948 | 0.09% | 12 | 2:38:14 |
| 76. | Mega Man 10 | 8,941 | 0.09% | 24 | 4:05:41 |
| 77. | Sonic the Hedgehog 2 | 8,830 | 0.09% | 31 | 2:37:37 |
| 78. | Banjo-Tooie | 8,828 | 0.09% | 54 | 14:09:45 |
| 79. | Sonic Adventure 2 | 8,820 | 0.09% | 20 | 5:01:55 |
| 80. | Donkey Kong Land III | 8,657 | 0.09% | 16 | 2:21:48 |
| 81. | Donkey Kong Country 3 | 8,110 | 0.08% | 24 | 7:14:03 |
| 82. | Mega Man X7 | 8,040 | 0.08% | 31 | 3:30:20 |
| 83. | Mega Man ZX | 7,980 | 0.08% | 19 | 5:22:08 |
| 84. | Donkey Kong Country 2 | 7,844 | 0.08% | 32 | 6:56:04 |
| 85. | ClueFinders: Mystery Mansion Arcade | 7,819 | 0.08% | 4 | 54:43 |
| 86. | Super Mario Galaxy | 7,774 | 0.08% | 38 | 9:35:09 |
| 87. | Super Mario Advance | 7,632 | 0.08% | 9 | 2:05:36 |
| 88. | Kirby's Epic Yarn | 7,203 | 0.07% | 32 | 8:11:41 |
| 89. | Wario Land 3 | 6,824 | 0.07% | 17 | 4:22:51 |
| 90. | Super Bomberman 5 | 6,767 | 0.07% | 8 | 1:32:52 |
| 91. | Mega Man X | 6,693 | 0.07% | 32 | 2:24:52 |
| 92. | Super Mario RPG | 6,623 | 0.07% | 32 | 8:45:13 |
| 93. | Sonic the Hedgehog | 6,585 | 0.07% | 27 | 2:31:25 |
| 94. | Shantae | 6,560 | 0.07% | 13 | 3:27:22 |
| 95. | Mega Man V | 6,305 | 0.06% | 7 | 1:25:07 |
| 96. | Pokémon XD: Gale of Darkness | 6,279 | 0.06% | 57 | 15:06:30 |
| 97. | Shrek 2 | 6,071 | 0.06% | 6 | 1:34:23 |
| 98. | Mega Man Legends | 6,021 | 0.06% | 24 | 6:47:15 |
| 99. | Journey | 5,969 | 0.06% | 6 | 12:35 |
| 100. | Wands | 5,855 | 0.06% | 2 | 29:55 |
