| 1. | Pokémon Red and Blue | 365 | 2.84% | 3 | 1:30:53 |
| 2. | Sonic the Hedgehog 2 | 353 | 2.75% | 8 | 4:02:08 |
| 3. | Donkey Kong Country 2 | 310 | 2.41% | 4 | 2:00:04 |
| 4. | Kingdom Hearts: Chain of Memories | 283 | 2.20% | 1 | 30:02 |
| 5. | Earthworm Jim: Menace 2 the Galaxy | 241 | 1.88% | 1 | 0:00 |
| 6. | Earthbound | 230 | 1.79% | 22 | 0:00 |
| 7. | Mega Man X | 202 | 1.57% | 5 | 0:00 |
| 8. | Pokémon Gold and Silver | 200 | 1.56% | 2 | 1:00:32 |
| 9. | Wario Land 4 | 155 | 1.21% | 6 | 2:31:38 |
| 10. | Bomberman 64: The Second Attack! | 146 | 1.14% | 7 | 1:00:30 |
| 11. | Mega Man IV | 112 | 0.87% | 4 | 30:16 |
| 12. | Chrono Trigger | 99 | 0.77% | 1 | 30:16 |
| 13. | Kid Chameleon | 94 | 0.73% | 5 | 2:32:54 |
| 14. | Mega Man Xtreme | 93 | 0.72% | 5 | 0:00 |
| 15. | Racing Gears Advance | 92 | 0.72% | 3 | 0:00 |
| 16. | Battletoads/Double Dragon | 90 | 0.70% | 3 | 1:30:42 |
| 17. | Blast Corps | 84 | 0.65% | 4 | 1:00:10 |
| 18. | Guilty Gear X | 83 | 0.65% | 6 | 3:00:06 |
| 19. | Fire Emblem: Shadow Dragon and the Blade of Light | 77 | 0.60% | 2 | 1:00:32 |
| 20. | Bomberman 64 | 71 | 0.55% | 1 | 0:00 |
| 21. | The Legend of Zelda: Link's Awakening | 54 | 0.42% | 8 | 0:00 |
| 22. | Mega Man V | 51 | 0.40% | 3 | 30:15 |
| 23. | Street Fighter II | 50 | 0.39% | 4 | 1:00:32 |
| 24. | Vectorman | 46 | 0.36% | 4 | 1:30:08 |
| 25. | Uniracers | 44 | 0.34% | 1 | 30:04 |
| 26. | Elite Soccer | 42 | 0.33% | 1 | 0:00 |
| 27. | Harry Potter and the Prisoner of Azkaban | 41 | 0.32% | 1 | 30:01 |
| 28. | Super Smash Bros. | 32 | 0.25% | 3 | 0:00 |
| 29. | Mega Man 2 | 31 | 0.24% | 5 | 0:00 |
| 30. | Guilty Gear XX | 28 | 0.22% | 1 | 30:02 |
| 31. | Metal Gear Solid 2: Sons of Liberty | 28 | 0.22% | 4 | 1:30:06 |
| 32. | Super Mario RPG | 27 | 0.21% | 3 | 0:00 |
| 33. | Austin Powers: Oh, Behave! | 26 | 0.20% | 1 | 45:05 |
| 34. | Super Metroid | 25 | 0.19% | 7 | 0:00 |
| 35. | Super Tetris 3 | 24 | 0.19% | 7 | 0:00 |
| 36. | Comix Zone | 23 | 0.18% | 1 | 30:02 |
| 37. | Zoda's Revenge: StarTropics II | 22 | 0.17% | 6 | 30:16 |
| 38. | NBA Jam: Tournament Edition | 21 | 0.16% | 4 | 1:00:17 |
| 39. | Mega Man 3 | 21 | 0.16% | 8 | 0:00 |
| 40. | Final Fantasy III | 20 | 0.16% | 2 | 0:00 |
| 41. | Buck Bumble | 19 | 0.15% | 2 | 0:00 |
| 42. | Airwolf | 17 | 0.13% | 1 | 30:01 |
| 43. | Donkey Kong Country 3 | 16 | 0.12% | 3 | 0:00 |
| 44. | Super Mario Bros. 2 | 16 | 0.12% | 3 | 0:00 |
| 45. | The New Tetris | 15 | 0.12% | 4 | 0:00 |
| 46. | Tetrisphere | 15 | 0.12% | 6 | 0:00 |
| 47. | Mega Man X3 | 15 | 0.12% | 5 | 0:00 |
| 48. | Dragon Quest III: The Seeds of Salvation | 14 | 0.11% | 1 | 30:47 |
| 49. | Vectorman 2 | 13 | 0.10% | 2 | 0:00 |
| 50. | Castlevania: Bloodlines | 13 | 0.10% | 1 | 0:00 |
| 51. | Tiny Toon Adventures: Buster Busts Loose! | 12 | 0.09% | 1 | 0:00 |
| 52. | Rush 2: Extreme Racing USA | 12 | 0.09% | 1 | 30:16 |
| 53. | The Revenge of Shinobi | 12 | 0.09% | 1 | 0:00 |
| 54. | RYGAR | 12 | 0.09% | 3 | 0:00 |
| 55. | Metal Gear 2: Solid Snake | 12 | 0.09% | 2 | 0:00 |
| 56. | Super Castlevania IV | 12 | 0.09% | 1 | 0:00 |
| 57. | Rad Racer | 11 | 0.09% | 1 | 0:00 |
| 58. | Final Fantasy VII | 11 | 0.09% | 1 | 30:16 |
| 59. | Tetris Blast | 10 | 0.08% | 3 | 30:03 |
| 60. | Mortal Kombat Trilogy | 10 | 0.08% | 1 | 0:00 |
| 61. | Sonic the Hedgehog 3 | 10 | 0.08% | 1 | 0:00 |
| 62. | Sonic the Hedgehog | 10 | 0.08% | 2 | 0:00 |
| 63. | Snowboard Kids 2 | 9 | 0.07% | 3 | 0:00 |
| 64. | SimCity 2000 | 9 | 0.07% | 3 | 0:00 |
| 65. | Metal Gear Solid | 9 | 0.07% | 3 | 0:00 |
| 66. | Advance Wars 2: Black Hole Rising | 9 | 0.07% | 4 | 0:00 |
| 67. | Castlevania | 9 | 0.07% | 3 | 0:00 |
| 68. | Red Alert | 8 | 0.06% | 1 | 0:00 |
| 69. | Mario Paint | 8 | 0.06% | 1 | 0:00 |
| 70. | F1 2002 | 8 | 0.06% | 1 | 0:00 |
| 71. | Wave Race 64 | 8 | 0.06% | 1 | 0:00 |
| 72. | Diddy Kong Racing | 8 | 0.06% | 3 | 0:00 |
| 73. | Progress Quest | 8 | 0.06% | 1 | 11:57:38 |
| 74. | Super Punch-Out!! | 8 | 0.06% | 1 | 0:00 |
| 75. | Mega Man & Bass | 8 | 0.06% | 1 | 0:00 |
| 76. | Solomon's Key 2 | 7 | 0.05% | 1 | 30:04 |
| 77. | Beavis and Butt-Head | 7 | 0.05% | 2 | 0:00 |
| 78. | Dynamite Headdy | 7 | 0.05% | 1 | 0:00 |
| 79. | Sonic Spinball | 7 | 0.05% | 1 | 0:00 |
| 80. | Mega Man Battle Network | 7 | 0.05% | 2 | 0:00 |
| 81. | Mario Kart 64 | 7 | 0.05% | 1 | 0:00 |
| 82. | Final Fantasy VI | 7 | 0.05% | 2 | 0:00 |
| 83. | Marvel Super Heroes vs. Street Fighter | 6 | 0.05% | 1 | 0:00 |
| 84. | Killer Instinct Gold | 6 | 0.05% | 1 | 30:16 |
| 85. | Civilization | 6 | 0.05% | 1 | 0:00 |
| 86. | Double Dragon III: The Sacred Stones | 6 | 0.05% | 1 | 0:00 |
| 87. | Mortal Kombat: Deadly Alliance | 6 | 0.05% | 1 | 0:00 |
| 88. | Mother 3 | 6 | 0.05% | 1 | 0:00 |
| 89. | Mega Man Battle Network 4 | 6 | 0.05% | 2 | 0:00 |
| 90. | Mega Man III | 6 | 0.05% | 2 | 0:00 |
| 91. | Castlevania: The Adventure | 6 | 0.05% | 1 | 0:00 |
| 92. | Final Fantasy Mystic Quest | 6 | 0.05% | 2 | 0:00 |
| 93. | Tetris Plus | 5 | 0.04% | 4 | 0:00 |
| 94. | SNK vs. Capcom: The Match of the Millennium | 5 | 0.04% | 1 | 0:00 |
| 95. | Advance Wars: Dual Strike | 5 | 0.04% | 3 | 0:00 |
| 96. | The Legend of Zelda | 5 | 0.04% | 1 | 0:00 |
| 97. | Mega Man 8 | 5 | 0.04% | 3 | 0:00 |
| 98. | Jazz Jackrabbit | 5 | 0.04% | 1 | 0:00 |
| 99. | Final Fantasy V | 5 | 0.04% | 1 | 0:00 |
| 100. | Final Fantasy | 5 | 0.04% | 2 | 0:00 |
