| 1. | Super Mario Sunshine | 1,641,852 | 7.19% | 7 | 6:58:50 |
| 2. | Tomb Raider: Anniversary | 1,447,613 | 6.34% | 20 | 8:54:15 |
| 3. | Mega Man X3 | 1,304,519 | 5.71% | 11 | 5:30:45 |
| 4. | Mega Man | 1,301,981 | 5.70% | 26 | 8:37:50 |
| 5. | Mega Man X8 | 1,052,324 | 4.61% | 12 | 7:33:29 |
| 6. | Mega Man X | 1,022,612 | 4.48% | 9 | 4:15:29 |
| 7. | Mega Man X4 | 958,818 | 4.20% | 14 | 6:58:36 |
| 8. | Mega Man X2 | 906,874 | 3.97% | 9 | 4:23:12 |
| 9. | Mega Man X5 | 867,851 | 3.80% | 10 | 5:58:25 |
| 10. | Mega Man X6 | 825,897 | 3.62% | 12 | 7:09:40 |
| 11. | Metroid Fusion | 676,945 | 2.96% | 21 | 9:16:47 |
| 12. | Mega Man 7 | 654,412 | 2.87% | 11 | 4:27:07 |
| 13. | Castlevania: Aria of Sorrow | 613,638 | 2.69% | 16 | 6:54:08 |
| 14. | The Magical Quest Starring Mickey Mouse | 582,428 | 2.55% | 3 | 1:43:10 |
| 15. | Mega Man 8 | 581,268 | 2.55% | 12 | 4:57:46 |
| 16. | Mega Man X7 | 553,516 | 2.42% | 14 | 7:43:16 |
| 17. | Super Metroid | 452,577 | 1.98% | 10 | 4:35:08 |
| 18. | Castlevania: Dawn of Sorrow | 391,947 | 1.72% | 20 | 8:46:44 |
| 19. | Tomb Raider: Underworld | 364,343 | 1.60% | 18 | 6:51:21 |
| 20. | Castlevania: Symphony of the Night | 348,040 | 1.52% | 22 | 9:26:22 |
| 21. | Tomb Raider: Legend | 291,807 | 1.28% | 15 | 5:20:37 |
| 22. | Super Mario World 2: Yoshi's Island | 287,325 | 1.26% | 7 | 6:42:53 |
| 23. | Prince of Persia: The Sands of Time | 274,139 | 1.20% | 14 | 5:57:12 |
| 24. | Metroid: Zero Mission | 263,742 | 1.15% | 9 | 5:36:58 |
| 25. | The Legend of Dragoon | 257,231 | 1.13% | 37 | 1:15:47:46 |
| 26. | Sonic Generations | 244,707 | 1.07% | 5 | 1:47:38 |
| 27. | Final Fantasy VII | 240,896 | 1.05% | 65 | 1:09:46:36 |
| 28. | Castlevania: Order of Ecclesia | 227,984 | 1.00% | 9 | 8:59:36 |
| 29. | Devil May Cry 4 | 204,174 | 0.89% | 20 | 7:16:00 |
| 30. | Mighty Morphin Power Rangers: The Movie | 198,097 | 0.87% | 3 | 1:54:42 |
| 31. | X-Men: Mutant Apocalypse | 195,318 | 0.86% | 6 | 3:11:48 |
| 32. | Rayman 2: The Great Escape | 150,408 | 0.66% | 17 | 9:49:06 |
| 33. | Ys Seven | 145,170 | 0.64% | 53 | 1:02:28:39 |
| 34. | Pokémon Black 2 and White 2 | 132,196 | 0.58% | 9 | 4:08:29 |
| 35. | Mega Man 2 | 129,650 | 0.57% | 4 | 1:12:50 |
| 36. | Disney's Aladdin | 124,047 | 0.54% | 3 | 1:36:46 |
| 37. | Mega Man 3 | 119,973 | 0.53% | 6 | 1:57:41 |
| 38. | Brave Fencer Musashi | 119,558 | 0.52% | 37 | 18:35:28 |
| 39. | ActRaiser | 113,799 | 0.50% | 12 | 4:14:46 |
| 40. | Mega Man 11 | 110,368 | 0.48% | 7 | 2:44:57 |
| 41. | Chrono Trigger | 108,682 | 0.48% | 45 | 20:27:32 |
| 42. | Donkey Kong Country 3 | 107,458 | 0.47% | 13 | 4:46:20 |
| 43. | Wonder Boy in Monster World | 98,828 | 0.43% | 4 | 3:35:01 |
| 44. | Contra III: The Alien Wars | 92,849 | 0.41% | 2 | 1:10:59 |
| 45. | Castlevania: Portrait of Ruin | 88,579 | 0.39% | 22 | 10:37:42 |
| 46. | Fire Emblem: Path of Radiance | 88,353 | 0.39% | 76 | 1:20:52:55 |
| 47. | Mega Man Zero Collection | 85,871 | 0.38% | 11 | 16:27:19 |
| 48. | Mega Man 6 | 83,254 | 0.36% | 6 | 1:37:44 |
| 49. | Donkey Kong Country 2 | 80,043 | 0.35% | 10 | 3:47:36 |
| 50. | Donkey Kong Country | 77,689 | 0.34% | 8 | 2:53:04 |
| 51. | Mega Man 5 | 77,100 | 0.34% | 6 | 1:43:17 |
| 52. | Castlevania: The Dracula X Chronicles | 73,517 | 0.32% | 8 | 2:57:22 |
| 53. | Sonic & All-Stars Racing Transformed | 73,274 | 0.32% | 5 | 1:47:23 |
| 54. | Wild Arms 4 | 71,649 | 0.31% | 52 | 1:03:44:20 |
| 55. | Mega Man 9 | 71,233 | 0.31% | 5 | 1:56:32 |
| 56. | Mega Man 10 | 68,682 | 0.30% | 5 | 2:05:55 |
| 57. | Ys: The Ark of Napishtim | 65,345 | 0.29% | 17 | 8:20:41 |
| 58. | Castlevania: Rondo of Blood | 58,353 | 0.26% | 7 | 2:28:23 |
| 59. | Odallus: The Dark Call | 57,634 | 0.25% | 11 | 4:00:07 |
| 60. | Castlevania: Curse of Darkness | 49,114 | 0.22% | 33 | 17:08:57 |
| 61. | Bloodstained: Curse of the Moon | 48,338 | 0.21% | 11 | 4:32:37 |
| 62. | Super Mario 64 | 44,404 | 0.19% | 16 | 5:21:34 |
| 63. | Bloodstained: Ritual of the Night | 42,884 | 0.19% | 24 | 12:00:32 |
| 64. | Mega Man 4 | 42,509 | 0.19% | 2 | 44:55 |
| 65. | Final Fantasy VIII | 41,751 | 0.18% | 57 | 1:05:22:25 |
| 66. | Super Mario World | 40,401 | 0.18% | 8 | 3:31:23 |
| 67. | Star Wars: The Force Unleashed | 35,191 | 0.15% | 18 | 6:56:06 |
| 68. | Tales of Phantasia | 34,312 | 0.15% | 49 | 1:00:46:39 |
| 69. | Castle of Illusion Starring Mickey Mouse | 31,293 | 0.14% | 6 | 1:43:13 |
| 70. | Super Mario 3D World | 30,368 | 0.13% | 26 | 8:33:07 |
| 71. | Hearthstone | 30,120 | 0.13% | 7 | 1:41:20 |
| 72. | Final Fantasy X | 26,039 | 0.11% | 61 | 1:09:01:23 |
| 73. | Super Mario All-Stars | 23,617 | 0.10% | 19 | 54:35 |
| 74. | Digimon World 2 | 22,963 | 0.10% | 16 | 1:11:49:18 |
| 75. | The Mummy Demastered | 22,349 | 0.10% | 11 | 4:35:17 |
| 76. | Wario Land 3 | 21,863 | 0.10% | 17 | 8:13:00 |
| 77. | Toshinden 4 | 21,460 | 0.09% | 5 | 2:40:35 |
| 78. | Kingdom Hearts | 19,586 | 0.09% | 23 | 11:42:49 |
| 79. | Dante's Inferno | 16,143 | 0.07% | 16 | 7:41:26 |
| 80. | Aggelos | 14,945 | 0.07% | 8 | 3:52:17 |
| 81. | Metroid: Samus Returns | 14,523 | 0.06% | 18 | 8:11:44 |
| 82. | Mega Man Xtreme | 13,951 | 0.06% | 3 | 1:14:01 |
| 83. | Fire Emblem: Radiant Dawn | 13,717 | 0.06% | 49 | 0:00 |
| 84. | Disney's Magical Quest 3 starring Mickey and Donald | 13,089 | 0.06% | 3 | 57:42 |
| 85. | Teenage Mutant Ninja Turtles IV: Turtles in Time | 12,276 | 0.05% | 5 | 2:17:14 |
| 86. | Escape Goat | 12,178 | 0.05% | 4 | 1:16:20 |
| 87. | Kingdom Hearts Final Mix | 11,381 | 0.05% | 10 | 3:09:31 |
| 88. | Mega Man Xtreme 2 | 10,946 | 0.05% | 3 | 1:19:00 |
| 89. | Disney's Aladdin in Nasira's Revenge | 10,882 | 0.05% | 10 | 3:48:37 |
| 90. | Dragon Ball Z: The Legacy of Goku II | 10,066 | 0.04% | 15 | 7:37:21 |
| 91. | Super Mario 3D Land | 9,193 | 0.04% | 16 | 6:20:54 |
| 92. | Kirby: Triple Deluxe | 7,918 | 0.03% | 13 | 6:37:17 |
| 93. | Goof Troop | 6,877 | 0.03% | 3 | 1:20:00 |
| 94. | Donald In the Magic Cap | 5,563 | 0.02% | 3 | 1:00:14 |
| 95. | The Legend of Zelda: Majora's Mask | 5,401 | 0.02% | 1 | 1:00:40 |
| 96. | Star Wars: The Force Unleashed II | 5,183 | 0.02% | 9 | 4:20:14 |
| 97. | Wario Land 4 | 5,135 | 0.02% | 9 | 3:54:04 |
| 98. | Kingdom Hearts III | 5,003 | 0.02% | 6 | 3:04:45 |
| 99. | Congo's Caper | 4,204 | 0.02% | 3 | 1:01:41 |
| 100. | Castlevania: Dracula X | 3,945 | 0.02% | 1 | 5:15 |
