| 1. | Mega Man X | 741,130 | 10.10% | 9 | 5:17:47 |
| 2. | Mega Man 7 | 683,217 | 9.31% | 10 | 4:35:05 |
| 3. | Contra ReBirth | 580,405 | 7.91% | 35 | 3:25:42 |
| 4. | Mega Man 2 | 491,643 | 6.70% | 15 | 9:20:35 |
| 5. | Blaster Master | 375,683 | 5.12% | 18 | 38:50 |
| 6. | Contra: Hard Corps | 305,521 | 4.16% | 2 | 3:00:00 |
| 7. | Castlevania: The Adventure ReBirth | 298,643 | 4.07% | 22 | 3:21:51 |
| 8. | Shantae: Risky's Revenge | 236,309 | 3.22% | 15 | 6:41:48 |
| 9. | Undertale | 217,756 | 2.97% | 3 | 23:53 |
| 10. | Blaster Master Zero | 152,881 | 2.08% | 10 | 19:53:07 |
| 11. | Mega Man Network Transmission | 115,959 | 1.58% | 25 | 9:30:40 |
| 12. | Mega Man | 100,945 | 1.38% | 50 | 1:03:33:06 |
| 13. | Mario Kart Arcade GP 2 | 97,204 | 1.32% | 1 | 16:45 |
| 14. | Chip 'n Dale Rescue Rangers | 84,981 | 1.16% | 9 | 2:30:01 |
| 15. | Super Mario Galaxy 2 | 68,989 | 0.94% | 1 | 8:14 |
| 16. | SegaSonic the Hedgehog | 64,713 | 0.88% | 1 | 21:27 |
| 17. | Pokémon Crystal | 63,005 | 0.86% | 55 | 3:47:44 |
| 18. | Sin and Punishment | 60,037 | 0.82% | 8 | 2:36:49 |
| 19. | Mega Man Legends | 59,266 | 0.81% | 38 | 8:58:15 |
| 20. | Mega Man 3 | 57,959 | 0.79% | 19 | 5:30:25 |
| 21. | Mega Man Legends 2 | 57,147 | 0.78% | 21 | 4:42:58 |
| 22. | Mega Man 10 | 52,411 | 0.71% | 13 | 2:11:27 |
| 23. | Pole's Big Adventure | 50,349 | 0.69% | 31 | 4:37:22 |
| 24. | Castlevania | 48,086 | 0.66% | 4 | 2:31:09 |
| 25. | Sword of the Necromancer | 46,813 | 0.64% | 1 | 1:46:22 |
| 26. | Mega Man Xtreme 2 | 45,798 | 0.62% | 5 | 1:00:47 |
| 27. | Fate/tiger colosseum | 43,546 | 0.59% | 5 | 49:27 |
| 28. | Super Mario World | 43,244 | 0.59% | 12 | 7:05:46 |
| 29. | Monster Hunter Portable 3rd | 42,240 | 0.58% | 1 | 42:46 |
| 30. | Rhythm Tengoku | 42,054 | 0.57% | 1 | 2:00:05 |
| 31. | The Legend of Zelda: Link's Awakening | 37,510 | 0.51% | 40 | 1:24:59 |
| 32. | Sonic the Fighters | 36,642 | 0.50% | 2 | 51:34 |
| 33. | Red Rust | 32,668 | 0.45% | 1 | 5:24:17 |
| 34. | Rockman EXE WS | 32,094 | 0.44% | 1 | 1:00 |
| 35. | Sonic Rivals | 31,715 | 0.43% | 1 | 9:49 |
| 36. | Mega Man 8 | 24,859 | 0.34% | 9 | 5:45:47 |
| 37. | Castlevania: Symphony of the Night | 23,886 | 0.33% | 1 | 2:03:41 |
| 38. | The Legend of Zelda: A Link to the Past | 23,827 | 0.32% | 66 | 13:24:52 |
| 39. | MIGHTY GUNVOLT | 23,446 | 0.32% | 1 | 48:08 |
| 40. | Blaster Master Zero 3 | 23,031 | 0.31% | 2 | 11:44:44 |
| 41. | Mega Man 4 | 22,862 | 0.31% | 9 | 4:03:16 |
| 42. | Mega Man V | 22,528 | 0.31% | 9 | 4:16:43 |
| 43. | Half-Minute Hero | 21,927 | 0.30% | 5 | 42:11 |
| 44. | Kirby's Adventure | 21,608 | 0.29% | 1 | 1:58:24 |
| 45. | Mega Man 11 | 21,031 | 0.29% | 4 | 3:21:27 |
| 46. | Blaster Master: Overdrive | 20,841 | 0.28% | 25 | 5:02:50 |
| 47. | Azure Striker Gunvolt | 18,215 | 0.25% | 2 | 5:21:44 |
| 48. | The Legend of Dark Witch: Episode 2 | 18,158 | 0.25% | 2 | 4:50:06 |
| 49. | Mega Man 6 | 16,534 | 0.23% | 8 | 4:09:20 |
| 50. | Mega Man 5 | 16,480 | 0.22% | 9 | 3:29:33 |
| 51. | Mega Man Maverick Hunter X | 15,873 | 0.22% | 13 | 2:41:40 |
| 52. | Banjo-Kazooie | 15,463 | 0.21% | 1 | 10:05 |
| 53. | Mega Man IV | 15,085 | 0.21% | 9 | 4:05:19 |
| 54. | Pizza Tower | 14,562 | 0.20% | 2 | 20:05 |
| 55. | Shantae: Half-Genie Hero | 14,175 | 0.19% | 5 | 12:42:53 |
| 56. | Raiden IV | 14,014 | 0.19% | 3 | 2:36:49 |
| 57. | Mega Man III | 13,240 | 0.18% | 8 | 3:22:56 |
| 58. | Super Castlevania IV | 12,269 | 0.17% | 5 | 6:49:43 |
| 59. | Mario Kart Wii | 12,214 | 0.17% | 23 | 2:51:57 |
| 60. | MIGHTY GUNVOLT BURST | 11,990 | 0.16% | 9 | 12:12:40 |
| 61. | Mega Man X2 | 11,635 | 0.16% | 16 | 4:14:41 |
| 62. | Super Mario Bros. 2 | 10,732 | 0.15% | 6 | 3:18:47 |
| 63. | Mega Man Xtreme | 10,201 | 0.14% | 6 | 1:35:19 |
| 64. | WarioWare D.I.Y. | 10,039 | 0.14% | 2 | 11:46 |
| 65. | Ultimate NES Remix | 9,828 | 0.13% | 2 | 17:27 |
| 66. | The Legend of Zelda | 9,521 | 0.13% | 12 | 7:39:52 |
| 67. | Chocobo Racing | 9,347 | 0.13% | 1 | 1:11:13 |
| 68. | Super Mario Bros. | 8,723 | 0.12% | 12 | 2:37:11 |
| 69. | Lucky Star: Net Idol Meister | 8,479 | 0.12% | 1 | 6:23 |
| 70. | Mega Man Zero 2 | 8,434 | 0.11% | 11 | 2:02:40 |
| 71. | Super Mario Kart | 8,205 | 0.11% | 5 | 3:56:22 |
| 72. | Pilotwings | 8,074 | 0.11% | 5 | 1:44:19 |
| 73. | DoDonPachi SaiDaiOuJou | 7,661 | 0.10% | 1 | 5:14 |
| 74. | Shovel Knight | 7,621 | 0.10% | 5 | 3:41:53 |
| 75. | Sonic CD | 7,577 | 0.10% | 4 | 1:25:34 |
| 76. | Power Stone Collection | 7,337 | 0.10% | 1 | 1:22:53 |
| 77. | TwinBee Yahho! | 7,258 | 0.10% | 1 | 25:22 |
| 78. | TaleSpin | 7,217 | 0.10% | 1 | 26:29 |
| 79. | Sonic the Hedgehog | 7,175 | 0.10% | 13 | 4:12:04 |
| 80. | Tatsunoko vs. Capcom: Ultimate All-Stars | 6,854 | 0.09% | 19 | 57:16 |
| 81. | Star Fox 2 | 6,841 | 0.09% | 1 | 31:44 |
| 82. | Super Puzzle Fighter II Turbo | 6,702 | 0.09% | 1 | 20:39 |
| 83. | Pokémon Rumble | 6,517 | 0.09% | 56 | 7:30:01 |
| 84. | The Disney Afternoon Collection | 6,391 | 0.09% | 1 | 3:02:01 |
| 85. | Mega Man 2: The Power Fighters | 6,225 | 0.08% | 5 | 1:16:41 |
| 86. | Nights: Journey of Dreams | 6,198 | 0.08% | 8 | 48:02 |
| 87. | Dr. Mario Online Rx | 6,002 | 0.08% | 3 | 20:56 |
| 88. | Super Gem Fighter Mini Mix | 5,978 | 0.08% | 1 | 38:03 |
| 89. | Star Fox 64 3D | 5,860 | 0.08% | 1 | 9:52 |
| 90. | Pokemon X and Y | 5,813 | 0.08% | 3 | 11:50 |
| 91. | Kirby 64: The Crystal Shards | 5,780 | 0.08% | 2 | 19:39 |
| 92. | Mega Man: Dr. Wily's Revenge | 5,712 | 0.08% | 6 | 2:04:19 |
| 93. | Zelda II: The Adventure of Link | 5,637 | 0.08% | 13 | 5:11:35 |
| 94. | Pokémon Stadium 2 | 5,333 | 0.07% | 3 | 3:52 |
| 95. | Yoshi's Safari | 5,211 | 0.07% | 5 | 1:50:04 |
| 96. | Kirby's Dream Land | 5,176 | 0.07% | 3 | 1:02:52 |
| 97. | Arc Rise Fantasia | 5,170 | 0.07% | 48 | 5:32:16 |
| 98. | Dragon Ball Evolution | 5,042 | 0.07% | 3 | 2:53 |
| 99. | Street Fighter | 5,036 | 0.07% | 1 | 3:19 |
| 100. | Tech Romancer | 5,033 | 0.07% | 1 | 1:03:17 |
