| 1. | Pokémon Crystal | 4,011,925 | 10.11% | 72 | 7:17:12:57 |
| 2. | Pokémon Emerald | 2,420,022 | 6.10% | 35 | 4:14:35:24 |
| 3. | Pokémon Platinum | 1,929,873 | 4.86% | 29 | 3:14:07:42 |
| 4. | Pokémon FireRed and LeafGreen | 1,857,492 | 4.68% | 32 | 2:08:39:07 |
| 5. | Yu-Gi-Oh! Legacy of the Duelist | 1,527,912 | 3.85% | 58 | 4:13:13:16 |
| 6. | Pokémon Mystery Dungeon: Blue Rescue Team and Red Rescue Team | 1,383,282 | 3.48% | 99 | 10:05:44:30 |
| 7. | Pokémon Red and Blue | 1,246,307 | 3.14% | 33 | 3:17:17:17 |
| 8. | Pokémon Black and White | 1,018,473 | 2.57% | 48 | 6:05:17:18 |
| 9. | Harvest Moon: Friends of Mineral Town | 572,013 | 1.44% | 22 | 1:21:36:14 |
| 10. | Yu-Gi-Oh! GX Tag Force | 563,349 | 1.42% | 30 | 4:05:51:44 |
| 11. | Digimon World | 518,819 | 1.31% | 21 | 1:19:22:44 |
| 12. | Yu-Gi-Oh! The Falsebound Kingdom | 424,722 | 1.07% | 25 | 2:19:54:45 |
| 13. | Yu-Gi-Oh! GX Duel Academy | 420,294 | 1.06% | 17 | 1:18:36:55 |
| 14. | Yu-Gi-Oh! Reshef of Destruction | 417,144 | 1.05% | 16 | 1:17:37:31 |
| 15. | Yu-Gi-Oh! GX Tag Force 2 | 369,029 | 0.93% | 28 | 4:06:48:28 |
| 16. | The Legend of Zelda: A Link to the Past | 364,662 | 0.92% | 30 | 2:19:13:59 |
| 17. | Pokémon Ruby and Sapphire | 322,923 | 0.81% | 3 | 8:26:28 |
| 18. | RPG Maker | 300,622 | 0.76% | 28 | 1:05:42:01 |
| 19. | Pokémon Mystery Dungeon: Explorers of Sky | 293,533 | 0.74% | 32 | 4:01:34:00 |
| 20. | Pokémon Colosseum | 287,968 | 0.73% | 15 | 1:09:25:38 |
| 21. | Pokémon Scarlet and Violet | 284,785 | 0.72% | 16 | 2:19:57:28 |
| 22. | Pokémon Stadium 2 | 250,323 | 0.63% | 18 | 1:17:30:59 |
| 23. | Castlevania: Dawn of Sorrow | 239,371 | 0.60% | 24 | 2:12:34:57 |
| 24. | Hamtaro: Ham-Ham Heartbreak | 222,729 | 0.56% | 6 | 9:05:27 |
| 25. | Resident Evil | 216,641 | 0.55% | 20 | 2:02:00:13 |
| 26. | Pokémon Black 2 and White 2 | 213,388 | 0.54% | 11 | 1:00:10:22 |
| 27. | Castlevania: Aria of Sorrow | 212,153 | 0.53% | 20 | 2:01:38:03 |
| 28. | Metroid Prime | 200,975 | 0.51% | 9 | 1:04:23:22 |
| 29. | The Legend of Zelda: Ocarina of Time | 195,001 | 0.49% | 20 | 1:20:05:46 |
| 30. | Castlevania: Portrait of Ruin | 191,643 | 0.48% | 22 | 2:17:32:14 |
| 31. | Pokémon Conquest | 173,058 | 0.44% | 10 | 21:53:39 |
| 32. | Five Nights at Freddy's | 169,691 | 0.43% | 13 | 14:24:07 |
| 33. | Yume Nikki | 159,458 | 0.40% | 14 | 20:13:34 |
| 34. | Don't Starve | 158,317 | 0.40% | 15 | 1:08:55:30 |
| 35. | Pokémon Stadium | 157,945 | 0.40% | 7 | 16:49:16 |
| 36. | Stardew Valley | 156,142 | 0.39% | 21 | 2:14:08:51 |
| 37. | Death Road to Canada | 145,033 | 0.37% | 18 | 1:07:51:56 |
| 38. | The Witch's House | 138,837 | 0.35% | 9 | 10:48:44 |
| 39. | Clock Tower | 130,475 | 0.33% | 4 | 11:03:28 |
| 40. | Yu-Gi-Oh! The Sacred Cards | 130,010 | 0.33% | 3 | 5:11:48 |
| 41. | Super Mario Maker 2 | 127,355 | 0.32% | 12 | 16:23:19 |
| 42. | Story of Seasons: Friends of Mineral Town | 119,273 | 0.30% | 16 | 1:15:22:30 |
| 43. | Digimon World Dawn and Dusk | 117,510 | 0.30% | 6 | 20:58:33 |
| 44. | VA-11 HALL-A | 117,420 | 0.30% | 27 | 1:22:34:18 |
| 45. | Fire Emblem: The Sacred Stones | 115,659 | 0.29% | 14 | 1:00:58:56 |
| 46. | Paper Mario | 112,918 | 0.28% | 12 | 1:08:26:21 |
| 47. | Pokémon Legends: Arceus | 109,634 | 0.28% | 12 | 1:17:14:03 |
| 48. | Digimon Story: Cyber Sleuth | 108,438 | 0.27% | 15 | 2:02:48:16 |
| 49. | Castlevania: Harmony of Dissonance | 107,565 | 0.27% | 9 | 1:01:32:13 |
| 50. | Earthbound | 107,563 | 0.27% | 12 | 1:13:54:03 |
| 51. | Castlevania: Order of Ecclesia | 106,664 | 0.27% | 11 | 1:06:25:35 |
| 52. | Hamtaro: Ham-Hams Unite! | 103,714 | 0.26% | 4 | 5:47:42 |
| 53. | Pokémon: Let's Go, Pikachu! and Let's Go, Eevee! | 102,077 | 0.26% | 9 | 1:03:09:08 |
| 54. | Clock Tower | 101,309 | 0.26% | 5 | 8:01:28 |
| 55. | Digimon Digital Card Battle | 99,377 | 0.25% | 7 | 11:21:17 |
| 56. | Dark Souls | 96,284 | 0.24% | 7 | 20:10:45 |
| 57. | Resident Evil 2 | 93,450 | 0.24% | 10 | 1:04:41:51 |
| 58. | Castlevania: Circle of the Moon | 93,282 | 0.23% | 9 | 1:01:57:50 |
| 59. | Resident Evil 4 | 91,670 | 0.23% | 11 | 1:15:14:02 |
| 60. | Pokémon Brilliant Diamond and Shining Pearl | 91,104 | 0.23% | 8 | 21:36:28 |
| 61. | Mega Man | 90,937 | 0.23% | 9 | 12:24:00 |
| 62. | The Legend of Zelda: Oracle of Seasons | 90,678 | 0.23% | 13 | 22:34:41 |
| 63. | Resident Evil | 88,064 | 0.22% | 6 | 12:21:55 |
| 64. | The Legend of Zelda: Oracle of Ages | 87,353 | 0.22% | 10 | 1:00:23:20 |
| 65. | The Legend of Zelda: Majora's Mask | 82,314 | 0.21% | 8 | 1:10:25:51 |
| 66. | Clock Tower II: The Struggle Within | 79,894 | 0.20% | 4 | 11:05:18 |
| 67. | Super Mario World | 79,224 | 0.20% | 3 | 5:25:01 |
| 68. | Don't Escape: 4 Days to Survive | 79,147 | 0.20% | 6 | 11:52:31 |
| 69. | Pokémon Gold and Silver | 78,048 | 0.20% | 2 | 10:49:22 |
| 70. | Yu-Gi-Oh! Online | 73,791 | 0.19% | 4 | 7:00:10 |
| 71. | The Legend of Zelda: The Wind Waker | 72,639 | 0.18% | 10 | 1:06:23:04 |
| 72. | NightCry | 69,022 | 0.17% | 5 | 11:33:35 |
| 73. | The Legend of Zelda: The Minish Cap | 68,858 | 0.17% | 8 | 15:57:34 |
| 74. | Banjo-Kazooie | 66,874 | 0.17% | 10 | 1:02:29:37 |
| 75. | Mega Man Battle Network | 65,801 | 0.17% | 3 | 11:53:05 |
| 76. | Doki Doki Literature Club! | 64,816 | 0.16% | 5 | 7:00:14 |
| 77. | DUSK | 64,410 | 0.16% | 1 | 1:11:34 |
| 78. | The Witch's House MV | 64,014 | 0.16% | 3 | 4:42:16 |
| 79. | Yu-Gi-Oh! GX: Spirit Caller | 63,190 | 0.16% | 1 | 2:20:50 |
| 80. | Rune Factory 2: A Fantasy Harvest Moon | 62,816 | 0.16% | 9 | 1:12:46:48 |
| 81. | Paper Mario: The Thousand-Year Door | 60,989 | 0.15% | 9 | 1:10:06:15 |
| 82. | Mega Man Battle Network 2 | 58,893 | 0.15% | 12 | 17:46:11 |
| 83. | Pikmin | 58,686 | 0.15% | 9 | 1:06:17:16 |
| 84. | Rogue Legacy | 57,842 | 0.15% | 7 | 13:08:46 |
| 85. | Animal Crossing: New Horizons | 56,878 | 0.14% | 12 | 21:33:45 |
| 86. | Minecraft | 55,504 | 0.14% | 3 | 2:54:07 |
| 87. | Resident Evil 3 | 55,012 | 0.14% | 6 | 13:47:07 |
| 88. | Pokémon Pinball: Ruby & Sapphire | 53,506 | 0.13% | 3 | 7:28:13 |
| 89. | Mario & Luigi: Bowser's Inside Story | 53,456 | 0.13% | 7 | 21:33:36 |
| 90. | Cuphead | 50,998 | 0.13% | 4 | 6:19:40 |
| 91. | Garbage | 50,818 | 0.13% | 3 | 4:45:36 |
| 92. | The Embodiment of Scarlet Devil | 48,434 | 0.12% | 2 | 5:00:09 |
| 93. | Pokémon Puzzle Challenge | 46,627 | 0.12% | 3 | 5:08:31 |
| 94. | Mad Father | 46,035 | 0.12% | 4 | 6:47:20 |
| 95. | Ao Oni | 44,442 | 0.11% | 3 | 2:59:38 |
| 96. | The Binding of Isaac: Rebirth | 43,922 | 0.11% | 4 | 7:03:20 |
| 97. | Mario & Luigi: Partners in Time | 43,921 | 0.11% | 5 | 16:16:34 |
| 98. | The Legend of Zelda: Skyward Sword | 42,998 | 0.11% | 7 | 1:02:02:05 |
| 99. | Bloodborne | 42,491 | 0.11% | 10 | 1:02:32:21 |
| 100. | Super Mario Bros. | 42,289 | 0.11% | 5 | 5:32:46 |
