| 1. | Mega Man Battle Network | 119,892 | 15.26% | 5 | 1:58:08 |
| 2. | Rockman EXE 4.5 Real Operation | 102,977 | 13.11% | 6 | 1:03:41 |
| 3. | Viewtiful Joe | 98,674 | 12.56% | 19 | 5:02:22 |
| 4. | Kirby 64: The Crystal Shards | 66,307 | 8.44% | 1 | 15:44 |
| 5. | Pole's Big Adventure | 56,914 | 7.24% | 1 | 30:52 |
| 6. | Mystic Square | 38,007 | 4.84% | 2 | 38:41 |
| 7. | Fire Emblem: Genealogy of the Holy War | 37,385 | 4.76% | 2 | 2:29 |
| 8. | Viewtiful Joe 2 | 37,353 | 4.75% | 11 | 8:06:11 |
| 9. | Mega Man Battle Network 5 | 33,591 | 4.27% | 2 | 6:58 |
| 10. | Fire Emblem: Path of Radiance | 28,246 | 3.59% | 2 | 20:09 |
| 11. | Goemon's Great Adventure | 20,929 | 2.66% | 5 | 43:56 |
| 12. | Mega Man | 13,637 | 1.74% | 5 | 1:52:52 |
| 13. | Hidden Star in Four Seasons | 10,947 | 1.39% | 7 | 2:35:54 |
| 14. | Monster Hunter 2 | 9,777 | 1.24% | 5 | 2:06:49 |
| 15. | Lotus Land Story | 6,729 | 0.86% | 1 | 9:49 |
| 16. | Mega Man Battle Network 3 | 5,389 | 0.69% | 1 | 0:24 |
| 17. | Mega Man ZX Advent | 4,882 | 0.62% | 18 | 4:47:13 |
| 18. | Kirby's Dream Collection | 3,853 | 0.49% | 4 | 51:06 |
| 19. | Wily Beast and Weakest Creature | 2,212 | 0.28% | 8 | 2:10:42 |
| 20. | Bravely Second: End Layer | 2,052 | 0.26% | 1 | 2:20 |
| 21. | Mountain of Faith | 1,858 | 0.24% | 11 | 2:42:53 |
| 22. | Violet Detector | 1,858 | 0.24% | 9 | 1:36:47 |
| 23. | Ten Desires | 1,397 | 0.18% | 6 | 1:58:10 |
| 24. | Final Fantasy V | 1,319 | 0.17% | 9 | 3:57:21 |
| 25. | Double Dealing Character | 1,307 | 0.17% | 4 | 1:17:10 |
| 26. | Highly Responsive to Prayers | 1,102 | 0.14% | 1 | 17:03 |
| 27. | Final Fantasy VII | 770 | 0.10% | 9 | 1:00:16:46 |
| 28. | Impossible Spell Card | 533 | 0.07% | 2 | 1:22 |
| 29. | The Legend of Zelda: Majora's Mask | 497 | 0.06% | 1 | 19:53 |
| 30. | Legacy of Lunatic Kingdom | 460 | 0.06% | 1 | 19:35 |
| 31. | Double Spoiler | 373 | 0.05% | 1 | 6:01 |
| 32. | Fairy Wars | 315 | 0.04% | 2 | 31:03 |
| 33. | Final Fantasy IX | 309 | 0.04% | 1 | 3:23 |
| 34. | Story of Eastern Wonderland | 294 | 0.04% | 1 | 22:24 |
| 35. | Subterranean Animism | 282 | 0.04% | 4 | 54:31 |
| 36. | Immaterial and Missing Power | 255 | 0.03% | 2 | 18:01 |
| 37. | The Embodiment of Scarlet Devil | 106 | 0.01% | 1 | 11:55 |
| 38. | Perfect Cherry Blossom | 90 | 0.01% | 1 | 18:36 |
| 39. | Boktai 2: Solar Boy Django | 66 | 0.01% | 1 | 7:31 |
