| 1. | Mario Power Tennis | 2,395,150 | 43.02% | 21 | 4:29:52 |
| 2. | Dragon Quest VIII: The Journey of the Cursed King | 181,599 | 3.26% | 76 | 12:35:58 |
| 3. | Maximo: Ghosts to Glory | 168,999 | 3.04% | 34 | 12:43:54 |
| 4. | Fire Emblem: Path of Radiance | 146,958 | 2.64% | 205 | 2:08:14:52 |
| 5. | New Super Mario Bros. | 127,879 | 2.30% | 71 | 11:47:01 |
| 6. | Road Runner's Death Valley Rally | 124,465 | 2.24% | 7 | 1:45:05 |
| 7. | Paper Mario: The Thousand-Year Door | 113,891 | 2.05% | 107 | 1:13:05:02 |
| 8. | Maximo vs. Army of Zin | 107,044 | 1.92% | 31 | 9:35:26 |
| 9. | Bomberman 64 | 100,798 | 1.81% | 43 | 7:46:05 |
| 10. | Mario & Luigi: Superstar Saga | 84,025 | 1.51% | 44 | 8:11:41 |
| 11. | Super Smash Bros. Ultimate | 78,433 | 1.41% | 61 | 16:23:30 |
| 12. | Castlevania: Portrait of Ruin | 71,662 | 1.29% | 37 | 9:06:19 |
| 13. | Tatsunoko vs. Capcom: Ultimate All-Stars | 71,565 | 1.29% | 98 | 13:32:40 |
| 14. | The Legend of Zelda: Ocarina of Time | 69,902 | 1.26% | 72 | 23:32:16 |
| 15. | Super Mario RPG | 68,870 | 1.24% | 43 | 1:01:21:38 |
| 16. | Sonic the Hedgehog 3 | 60,823 | 1.09% | 34 | 8:03:42 |
| 17. | Turok: Dinosaur Hunter | 60,112 | 1.08% | 31 | 8:21:49 |
| 18. | Super Punch-Out!! | 49,173 | 0.88% | 11 | 1:40:04 |
| 19. | Soulcalibur II | 43,699 | 0.78% | 8 | 59:43 |
| 20. | Alex Kidd in Miracle World | 42,904 | 0.77% | 8 | 1:22:23 |
| 21. | Mystical Ninja Starring Goemon | 40,216 | 0.72% | 49 | 10:20:30 |
| 22. | Punch-Out!! | 36,334 | 0.65% | 17 | 2:31:45 |
| 23. | Wario World | 36,122 | 0.65% | 29 | 4:50:36 |
| 24. | Final Fantasy Mystic Quest | 34,691 | 0.62% | 81 | 17:00:21 |
| 25. | Super Smash Bros. Brawl | 34,289 | 0.62% | 65 | 8:57:41 |
| 26. | Bomberman 64: The Second Attack! | 32,354 | 0.58% | 36 | 9:23:35 |
| 27. | Wonder Boy III: The Dragon's Trap | 32,068 | 0.58% | 21 | 5:25:40 |
| 28. | Mario Kart 64 | 30,826 | 0.55% | 18 | 4:17:58 |
| 29. | Arc Rise Fantasia | 30,698 | 0.55% | 173 | 2:07:52:12 |
| 30. | Donkey Kong Country 3 | 30,209 | 0.54% | 29 | 7:44:17 |
| 31. | Donkey Kong Country 2 | 29,845 | 0.54% | 26 | 6:25:26 |
| 32. | Mischief Makers | 27,938 | 0.50% | 34 | 5:25:46 |
| 33. | Kirby's Dream Land 3 | 27,549 | 0.49% | 26 | 6:57:07 |
| 34. | Mega Man X4 | 25,475 | 0.46% | 20 | 5:52:45 |
| 35. | Shantae | 23,678 | 0.43% | 24 | 6:17:18 |
| 36. | Sonic CD | 23,123 | 0.42% | 6 | 1:26:27 |
| 37. | Sonic the Hedgehog 2 | 22,887 | 0.41% | 14 | 1:59:33 |
| 38. | The Death and Return of Superman | 21,746 | 0.39% | 10 | 1:43:14 |
| 39. | Mighty Morphin Power Rangers | 21,715 | 0.39% | 3 | 1:00:18 |
| 40. | Star Fox 64 | 20,880 | 0.38% | 17 | 2:25:11 |
| 41. | Viewtiful Joe | 20,235 | 0.36% | 25 | 4:14:08 |
| 42. | Kirby's Adventure | 19,481 | 0.35% | 23 | 5:22:50 |
| 43. | Shaq Fu | 19,255 | 0.35% | 6 | 1:01:32 |
| 44. | Tecmo Secret of the Stars | 18,275 | 0.33% | 15 | 3:43:18 |
| 45. | Donkey Kong Country | 17,699 | 0.32% | 14 | 3:24:06 |
| 46. | Alex Kidd in the Enchanted Castle | 17,695 | 0.32% | 8 | 1:44:22 |
| 47. | Iggy's Reckin' Balls | 17,534 | 0.31% | 10 | 1:28:07 |
| 48. | Metroid Prime | 17,293 | 0.31% | 63 | 10:49:26 |
| 49. | The Flintstones: The Treasure of Sierra Madrock | 16,165 | 0.29% | 10 | 2:35:28 |
| 50. | Kirby's Dream Land 2 | 15,761 | 0.28% | 21 | 5:48:46 |
| 51. | Tiny Toon Adventures: Buster's Hidden Treasure | 14,427 | 0.26% | 9 | 2:25:11 |
| 52. | The Grave Digger | 13,765 | 0.25% | 1 | 9:45 |
| 53. | The Legend of Zelda: Link's Awakening | 13,664 | 0.25% | 12 | 2:50:31 |
| 54. | Tiny Toon Adventures: Buster Busts Loose! | 13,269 | 0.24% | 9 | 2:25:43 |
| 55. | Monster World IV | 12,569 | 0.23% | 26 | 5:30:48 |
| 56. | Rosenkreuzstilette | 12,382 | 0.22% | 17 | 3:25:03 |
| 57. | Mega Man X | 12,134 | 0.22% | 24 | 6:18:32 |
| 58. | Wonder Boy in Monster World | 11,986 | 0.22% | 16 | 2:51:18 |
| 59. | Super Smash Bros. for Wii U | 11,863 | 0.21% | 31 | 5:33:26 |
| 60. | Wonder Boy | 11,788 | 0.21% | 6 | 1:25:30 |
| 61. | Dragon View | 11,130 | 0.20% | 40 | 9:35:39 |
| 62. | Pokémon Black and White | 10,647 | 0.19% | 16 | 4:58:56 |
| 63. | Sonic the Hedgehog | 10,215 | 0.18% | 8 | 1:20:21 |
| 64. | ActRaiser | 10,063 | 0.18% | 22 | 6:13:01 |
| 65. | Thunder Force V | 9,546 | 0.17% | 7 | 1:06:06 |
| 66. | Super Mario Land 2: 6 Golden Coins | 9,458 | 0.17% | 16 | 2:35:56 |
| 67. | Super Mario Bros. | 9,273 | 0.17% | 10 | 3:03:19 |
| 68. | Wario Land: Super Mario Land 3 | 9,115 | 0.16% | 15 | 3:50:32 |
| 69. | Mega Man X3 | 8,957 | 0.16% | 13 | 3:19:34 |
| 70. | Donkey Kong | 8,736 | 0.16% | 12 | 3:08:28 |
| 71. | The Addams Family | 8,625 | 0.15% | 12 | 2:59:03 |
| 72. | Kirby Super Star Ultra | 8,106 | 0.15% | 19 | 5:58:46 |
| 73. | Super Adventure Island II | 8,037 | 0.14% | 21 | 3:36:56 |
| 74. | Gunstar Heroes | 7,494 | 0.13% | 18 | 4:12:37 |
| 75. | Mega Man 7 | 7,153 | 0.13% | 13 | 7:36:49 |
| 76. | Castle of Illusion Starring Mickey Mouse | 7,060 | 0.13% | 6 | 1:21:18 |
| 77. | Jewel Master | 6,953 | 0.12% | 7 | 1:02:18 |
| 78. | New Super Mario Bros. Wii | 6,899 | 0.12% | 4 | 42:17 |
| 79. | Puyo Pop Fever | 6,819 | 0.12% | 2 | 27:07 |
| 80. | Mega Man X2 | 6,375 | 0.11% | 12 | 2:22:39 |
| 81. | Mario Golf | 6,222 | 0.11% | 43 | 15:22:55 |
| 82. | Mario Is Missing! | 5,846 | 0.11% | 11 | 2:23:09 |
| 83. | Sonic Robo Blast 2 | 5,807 | 0.10% | 16 | 4:21:58 |
| 84. | Resident Evil 4 | 4,632 | 0.08% | 15 | 3:26:24 |
| 85. | Dragon Quest IX: Sentinels of the Starry Skies | 4,332 | 0.08% | 9 | 2:26:39 |
| 86. | The Batman | 4,219 | 0.08% | 2 | 33:01 |
| 87. | Super Mario 64 | 4,158 | 0.07% | 7 | 1:52:00 |
| 88. | Revolution X | 4,038 | 0.07% | 3 | 45:10 |
| 89. | TimeSplitters: Future Perfect | 4,023 | 0.07% | 1 | 7:08 |
| 90. | Kirby's Avalanche | 3,885 | 0.07% | 2 | 45:19 |
| 91. | Super Bomberman | 3,861 | 0.07% | 7 | 1:46:34 |
| 92. | Mario Party 2 | 3,596 | 0.06% | 1 | 0:35 |
| 93. | Super Mario Advance 4: Super Mario Bros. 3 | 3,512 | 0.06% | 20 | 7:23:58 |
| 94. | Donkey Kong Country Returns | 3,433 | 0.06% | 23 | 8:35:37 |
| 95. | Super Bomberman 2 | 3,358 | 0.06% | 6 | 1:35:42 |
| 96. | Lord of the Sword | 3,269 | 0.06% | 8 | 1:47:23 |
| 97. | Super Smash Bros. | 3,187 | 0.06% | 3 | 42:53 |
| 98. | Mario Party Superstars | 3,057 | 0.05% | 1 | 0:27 |
| 99. | Super Mario Land | 2,959 | 0.05% | 3 | 32:40 |
| 100. | Kirby Super Star | 2,907 | 0.05% | 2 | 22:12 |
