| 1. | Dragon Quest | 1,131,942 | 9.71% | 108 | 7:57:03 |
| 2. | Earthbound | 600,653 | 5.15% | 106 | 3:46:21 |
| 3. | SD Gundam G Generation-F | 593,709 | 5.09% | 211 | 13:03:39 |
| 4. | Final Fantasy IV | 588,245 | 5.04% | 16 | 1:31:34 |
| 5. | Super Mario World | 544,632 | 4.67% | 23 | 58:10 |
| 6. | Final Fantasy III | 397,862 | 3.41% | 31 | 1:45:48 |
| 7. | Dragon Quest II: Luminaries of the Legendary Line | 331,843 | 2.85% | 17 | 1:52:13 |
| 8. | Dragon Quest VI: Realms of Revelation | 246,596 | 2.11% | 27 | 2:02:23 |
| 9. | Final Fantasy V | 239,154 | 2.05% | 53 | 3:02:33 |
| 10. | Tales of Destiny | 236,523 | 2.03% | 71 | 4:59:28 |
| 11. | Kirby Super Star | 232,042 | 1.99% | 49 | 1:43:04 |
| 12. | Dragon Quest V: Hand of the Heavenly Bride | 230,462 | 1.98% | 44 | 3:14:17 |
| 13. | Samurai Warriors | 209,688 | 1.80% | 12 | 54:36 |
| 14. | Secret of Mana | 205,792 | 1.76% | 43 | 2:28:20 |
| 15. | Dynasty Warriors: Gundam Reborn | 184,490 | 1.58% | 26 | 1:42:49 |
| 16. | Dragon Ball Z: Kyoushuu! Saiyajin | 182,382 | 1.56% | 22 | 57:20 |
| 17. | 4th Super Robot Wars | 169,523 | 1.45% | 24 | 1:54:37 |
| 18. | Samurai Warriors 2 | 148,307 | 1.27% | 25 | 1:29:47 |
| 19. | Everybody's Golf 4 | 143,831 | 1.23% | 73 | 4:48:26 |
| 20. | Dragon Ball Z: Super Saiya Densetsu | 138,854 | 1.19% | 19 | 44:10 |
| 21. | SD Gundam G Generation Neo | 122,995 | 1.05% | 72 | 3:53:07 |
| 22. | Dynasty Warriors 6 | 116,220 | 1.00% | 49 | 4:01:37 |
| 23. | Super Mario Bros. 3 | 110,229 | 0.95% | 52 | 1:09:07 |
| 24. | Dragon Quest III: The Seeds of Salvation | 108,370 | 0.93% | 75 | 3:54:56 |
| 25. | Street Fighter II | 107,783 | 0.92% | 14 | 22:23 |
| 26. | Toukiden: Kiwami | 106,351 | 0.91% | 59 | 5:27:25 |
| 27. | Super Hero Generation | 105,501 | 0.90% | 26 | 1:28:31 |
| 28. | Super Bomberman 2 | 104,632 | 0.90% | 11 | 45:58 |
| 29. | Front Mission | 102,806 | 0.88% | 13 | 1:22:35 |
| 30. | Super Mario Land 2: 6 Golden Coins | 89,110 | 0.76% | 21 | 58:40 |
| 31. | Castlevania: Symphony of the Night | 86,640 | 0.74% | 27 | 2:10:36 |
| 32. | Dragon Ball Z II: Gekishin Freeza!! | 77,140 | 0.66% | 12 | 35:52 |
| 33. | Toukiden 2 | 73,864 | 0.63% | 34 | 2:53:43 |
| 34. | Samurai Warriors 3 | 73,099 | 0.63% | 25 | 1:40:11 |
| 35. | Fire Emblem: Shadow Dragon and the Blade of Light | 72,274 | 0.62% | 18 | 1:32:21 |
| 36. | Dragon Ball Z: Super Butōden | 68,885 | 0.59% | 38 | 1:31:01 |
| 37. | Final Fantasy II | 67,056 | 0.57% | 7 | 34:20 |
| 38. | Tokyo Xtreme Racer: Zero | 65,985 | 0.57% | 26 | 1:25:17 |
| 39. | Fire Emblem Gaiden | 65,971 | 0.57% | 27 | 1:19:48 |
| 40. | Gakkou de atta Kowai Hanashi | 65,142 | 0.56% | 23 | 1:29:56 |
| 41. | Parasite Eve | 58,143 | 0.50% | 14 | 51:29 |
| 42. | Dragon Quest VII: Fragments of the Forgotten Past | 54,595 | 0.47% | 36 | 2:37:30 |
| 43. | Tenchu: Wrath of Heaven | 53,785 | 0.46% | 22 | 1:49:55 |
| 44. | Way of the Samurai 2 | 53,122 | 0.46% | 22 | 1:32:40 |
| 45. | Dark Souls | 47,905 | 0.41% | 102 | 16:14:35 |
| 46. | Street Fighter V | 46,765 | 0.40% | 26 | 1:46:58 |
| 47. | Seven: Molmorth no Kiheitai | 46,255 | 0.40% | 75 | 11:12:56 |
| 48. | Super Mario Bros. | 44,781 | 0.38% | 5 | 12:58 |
| 49. | Super Mario Land | 42,273 | 0.36% | 14 | 21:45 |
| 50. | Devil Kings | 42,143 | 0.36% | 33 | 2:00:27 |
| 51. | Front Mission 2 | 39,317 | 0.34% | 23 | 1:32:33 |
| 52. | SD Gundam G Next | 38,897 | 0.33% | 18 | 1:02:11 |
| 53. | Shin Megami Tensei III: Nocturne | 34,936 | 0.30% | 91 | 6:09:25 |
| 54. | Way of the Samurai | 33,718 | 0.29% | 12 | 49:42 |
| 55. | ActRaiser | 32,946 | 0.28% | 17 | 56:48 |
| 56. | Final Fantasy VII | 32,534 | 0.28% | 37 | 2:58:39 |
| 57. | Tactics Ogre: Let Us Cling Together | 31,051 | 0.27% | 41 | 1:49:06 |
| 58. | Dynasty Warriors: Gundam | 31,048 | 0.27% | 7 | 23:36 |
| 59. | Mobile Suit Gundam: Lost War Chronicles | 28,348 | 0.24% | 12 | 38:32 |
| 60. | Super Bomberman 3 | 26,713 | 0.23% | 20 | 40:20 |
| 61. | Tantei Jinguuji Saburo: Yume no Owari ni | 26,119 | 0.22% | 25 | 1:33:48 |
| 62. | Demon's Souls | 21,997 | 0.19% | 61 | 8:19:36 |
| 63. | The Legend of the Mystical Ninja | 21,675 | 0.19% | 55 | 1:44:41 |
| 64. | Boku no Natsuyasumi 2 | 20,631 | 0.18% | 11 | 54:17 |
| 65. | Tantei Jinguuji Saburo: Yokohama-ko Renzoku Satsujin Jiken | 19,344 | 0.17% | 15 | 33:42 |
| 66. | Super Bomberman | 18,680 | 0.16% | 13 | 35:30 |
| 67. | Super Bomberman 4 | 18,551 | 0.16% | 14 | 29:45 |
| 68. | Dynasty Warriors 7 | 17,356 | 0.15% | 54 | 3:10:30 |
| 69. | Memories Off | 16,742 | 0.14% | 79 | 4:19:26 |
| 70. | Tantei Jinguuji Saburo: Kagaribi ga Kienu Mani | 16,321 | 0.14% | 27 | 1:50:19 |
| 71. | Tourist Trophy | 16,160 | 0.14% | 2 | 13:17 |
| 72. | Final Fantasy VI | 15,878 | 0.14% | 52 | 2:54:18 |
| 73. | Street Fighter | 15,589 | 0.13% | 6 | 17:50 |
| 74. | Super Robot Wars A | 15,302 | 0.13% | 1 | 5:25 |
| 75. | Wizardry | 14,862 | 0.13% | 11 | 40:58 |
| 76. | F-Zero | 13,908 | 0.12% | 11 | 39:20 |
| 77. | Donkey Kong Country | 13,706 | 0.12% | 21 | 1:13:04 |
| 78. | Princess Tomato in the Salad Kingdom | 13,032 | 0.11% | 12 | 28:55 |
| 79. | Tantei Jinguuji Saburo: Kiken na Futari Zenpen | 12,963 | 0.11% | 11 | 25:22 |
| 80. | Toukiden: The Age of Demons | 12,834 | 0.11% | 9 | 43:12 |
| 81. | Tantei Jinguuji Saburo: Innocent Black | 11,885 | 0.10% | 22 | 1:34:32 |
| 82. | Jaseiken Necromancer | 11,495 | 0.10% | 9 | 41:34 |
| 83. | Mobile Suit Gundam Side Story: The Blue Destiny | 11,467 | 0.10% | 4 | 17:05 |
| 84. | Mappy-Land | 10,938 | 0.09% | 9 | 20:55 |
| 85. | Tantei Jinguuji Saburo: Mikan no Report | 10,883 | 0.09% | 24 | 1:26:06 |
| 86. | Darkstalkers Resurrection | 10,690 | 0.09% | 12 | 38:37 |
| 87. | Doraemon | 10,444 | 0.09% | 12 | 38:08 |
| 88. | Milon's Secret Castle | 10,260 | 0.09% | 3 | 15:37 |
| 89. | Auto Modellista | 10,257 | 0.09% | 20 | 1:29:10 |
| 90. | Shadowgate | 9,996 | 0.09% | 12 | 58:19 |
| 91. | Mobile Suit Gundam: Battlefield Record UC0081 | 9,887 | 0.08% | 12 | 26:30 |
| 92. | Super Dodge Ball | 9,305 | 0.08% | 13 | 38:12 |
| 93. | Pokémon Red and Blue | 9,302 | 0.08% | 35 | 1:06:34 |
| 94. | Global Defence Force | 9,180 | 0.08% | 15 | 45:36 |
| 95. | SD Gundam G Generation Seed | 9,153 | 0.08% | 5 | 13:51 |
| 96. | Super Ghouls 'n Ghosts | 9,137 | 0.08% | 18 | 37:17 |
| 97. | Salamander | 9,047 | 0.08% | 5 | 10:37 |
| 98. | SD Gundam G Generation Spirits | 8,751 | 0.08% | 6 | 18:04 |
| 99. | G-Saviour | 8,669 | 0.07% | 22 | 1:26:08 |
| 100. | Super Gachapon World: SD Gundam X | 8,617 | 0.07% | 27 | 1:07:31 |
