| 1. | Super Mario 64 | 3,908,345 | 16.02% | 311 | 4:20:44:34 |
| 2. | I Wanna Be the Guy | 2,123,879 | 8.71% | 17 | 6:08:49 |
| 3. | Pokémon FireRed and LeafGreen | 1,916,666 | 7.86% | 101 | 18:05:45 |
| 4. | The Legend of Zelda: Majora's Mask | 1,562,473 | 6.40% | 99 | 2:15:15:11 |
| 5. | Super Mario Sunshine | 1,285,843 | 5.27% | 58 | 10:26:08 |
| 6. | Pokémon Emerald | 896,970 | 3.68% | 47 | 15:24:40 |
| 7. | The Legend of Zelda | 770,905 | 3.16% | 114 | 2:15:29:14 |
| 8. | Banjo-Tooie | 582,845 | 2.39% | 59 | 18:33:53 |
| 9. | Super Mario World | 504,926 | 2.07% | 55 | 18:05:11 |
| 10. | Super Mario Galaxy | 400,921 | 1.64% | 53 | 12:11:38 |
| 11. | Gex: Enter the Gecko | 352,967 | 1.45% | 36 | 15:15:43 |
| 12. | Yoshi's Story | 308,562 | 1.26% | 26 | 4:21:47 |
| 13. | Pikmin 2 | 287,036 | 1.18% | 57 | 19:31:44 |
| 14. | Pokémon Platinum | 277,159 | 1.14% | 82 | 1:19:14:19 |
| 15. | Super Mario Odyssey | 272,266 | 1.12% | 24 | 22:37:43 |
| 16. | Metroid Prime | 239,326 | 0.98% | 41 | 2:12:58:07 |
| 17. | Ape Escape | 234,688 | 0.96% | 35 | 6:10:07 |
| 18. | Super Mario Galaxy 2 | 227,459 | 0.93% | 37 | 13:08:55 |
| 19. | Super Mario RPG | 225,406 | 0.92% | 45 | 19:46:00 |
| 20. | Wario Land 4 | 206,319 | 0.85% | 25 | 4:33:52 |
| 21. | Super Smash Bros. Melee | 190,241 | 0.78% | 29 | 15:28:20 |
| 22. | Banjo-Kazooie | 183,878 | 0.75% | 67 | 1:08:00:02 |
| 23. | Pikmin | 162,164 | 0.66% | 29 | 4:04:18 |
| 24. | Paper Mario: The Thousand-Year Door | 143,596 | 0.59% | 57 | 1:12:44:41 |
| 25. | Sly Cooper and the Thievius Raccoonus | 137,439 | 0.56% | 28 | 6:29:05 |
| 26. | Fireboy and Watergirl | 137,381 | 0.56% | 2 | 30:20 |
| 27. | Super Mario Bros. | 129,626 | 0.53% | 12 | 1:43:58 |
| 28. | The Voyager | 129,196 | 0.53% | 30 | 12:45:53 |
| 29. | Luigi's Adventure | 127,354 | 0.52% | 19 | 12:19:19 |
| 30. | Metroid: Zero Mission | 115,527 | 0.47% | 18 | 15:44:10 |
| 31. | Mega Man 10 | 114,055 | 0.47% | 15 | 5:38:42 |
| 32. | Mega Man 9 | 113,034 | 0.46% | 15 | 4:17:38 |
| 33. | Metroid | 104,304 | 0.43% | 13 | 7:28:16 |
| 34. | Pokémon HeartGold and SoulSilver | 103,387 | 0.42% | 32 | 23:02:38 |
| 35. | Pikmin 3 | 87,425 | 0.36% | 29 | 10:56:52 |
| 36. | Pokémon Yellow | 85,826 | 0.35% | 28 | 22:01:14 |
| 37. | Metroid II: Return of Samus | 83,190 | 0.34% | 11 | 1:44:09 |
| 38. | Donkey Kong 64 | 74,706 | 0.31% | 24 | 13:24:02 |
| 39. | Conker's Bad Fur Day | 74,196 | 0.30% | 18 | 10:42:13 |
| 40. | Mega Man | 61,048 | 0.25% | 9 | 5:12:50 |
| 41. | Gex | 59,247 | 0.24% | 14 | 3:08:28 |
| 42. | Super Smash Bros. Brawl | 55,838 | 0.23% | 9 | 2:02:28:01 |
| 43. | Exhaust | 54,444 | 0.22% | 13 | 1:32:41 |
| 44. | WarioWare: Twisted! | 53,306 | 0.22% | 1 | 1:06:08 |
| 45. | Pokémon Crystal | 52,862 | 0.22% | 20 | 1:04:51:48 |
| 46. | Yoshi's Island DS | 52,117 | 0.21% | 24 | 19:42:41 |
| 47. | Paper Mario | 46,688 | 0.19% | 2 | 1:15:56 |
| 48. | Star Fox 64 | 44,776 | 0.18% | 11 | 6:37:54 |
| 49. | The Legend of Zelda: The Minish Cap | 44,441 | 0.18% | 25 | 19:54:05 |
| 50. | The Legend of Zelda: Ocarina of Time | 44,301 | 0.18% | 46 | 5:09:11:47 |
| 51. | The Legend of Zelda: Link's Awakening | 44,281 | 0.18% | 15 | 15:12:26 |
| 52. | Super Metroid | 43,604 | 0.18% | 20 | 1:12:40:14 |
| 53. | My Pokémon Ranch | 42,698 | 0.18% | 1 | 15:30 |
| 54. | Monty on the Run | 42,660 | 0.17% | 2 | 15:09 |
| 55. | Mario Bros. | 40,652 | 0.17% | 4 | 50:50 |
| 56. | Banjo-Kazooie: Grunty's Revenge | 40,060 | 0.16% | 2 | 21:58 |
| 57. | The Legend of Zelda: The Wind Waker | 38,936 | 0.16% | 24 | 1:11:22:08 |
| 58. | Yooka-Laylee | 36,725 | 0.15% | 24 | 18:37:21 |
| 59. | Minecraft | 35,883 | 0.15% | 22 | 14:57:11 |
| 60. | Pokémon Black and White | 34,649 | 0.14% | 15 | 1:01:50:06 |
| 61. | Pokémon Diamond and Pearl | 34,497 | 0.14% | 2 | 17:47 |
| 62. | Plok | 31,886 | 0.13% | 8 | 5:23:56 |
| 63. | The Legend of Zelda: Oracle of Seasons | 28,975 | 0.12% | 7 | 1:14:18 |
| 64. | The Legend of Zelda: Twilight Princess | 27,934 | 0.11% | 31 | 2:04:55:11 |
| 65. | MOTAS | 27,478 | 0.11% | 4 | 3:53:28 |
| 66. | Tomb Raider: The Last Revelation | 25,318 | 0.10% | 8 | 1:26:44 |
| 67. | This is the Only Level Too | 24,973 | 0.10% | 2 | 24:45 |
| 68. | Kirby Super Star | 24,893 | 0.10% | 8 | 6:10:31 |
| 69. | Gex 3: Deep Cover Gecko | 24,270 | 0.10% | 1 | 11:00 |
| 70. | Pac-Man | 23,230 | 0.10% | 2 | 20:45 |
| 71. | Pokémon Black 2 and White 2 | 22,808 | 0.09% | 10 | 6:46:15 |
| 72. | Diddy Kong Racing | 22,638 | 0.09% | 6 | 6:03:43 |
| 73. | Super Smash Bros. for Wii U | 22,150 | 0.09% | 9 | 7:36:08 |
| 74. | The Watchers | 21,415 | 0.09% | 6 | 1:05:30:26 |
| 75. | Kirby's Adventure | 20,426 | 0.08% | 8 | 3:29:29 |
| 76. | Metroid Fusion | 19,853 | 0.08% | 10 | 14:32:25 |
| 77. | Sonic the Hedgehog 2 | 19,821 | 0.08% | 2 | 3:34:21 |
| 78. | Super Mario Land | 19,324 | 0.08% | 2 | 3:00:42 |
| 79. | Super Smash Bros. | 19,029 | 0.08% | 5 | 3:57:01 |
| 80. | Ristar | 18,941 | 0.08% | 7 | 2:03:41 |
| 81. | The Elder Scrolls V: Skyrim | 16,372 | 0.07% | 17 | 14:43:25 |
| 82. | Super Smash Bros. Ultimate | 16,287 | 0.07% | 16 | 1:03:31:04 |
| 83. | Happy Wheels | 16,202 | 0.07% | 2 | 23:49 |
| 84. | Banjo-Kazooie: Nuts & Bolts | 16,198 | 0.07% | 1 | 21:17 |
| 85. | Super Mario Maker | 16,024 | 0.07% | 8 | 9:20:35 |
| 86. | QWOP | 15,572 | 0.06% | 1 | 7:48 |
| 87. | Metroid Prime 3: Corruption | 15,218 | 0.06% | 8 | 21:44:33 |
| 88. | Notpron | 15,041 | 0.06% | 2 | 3:14:49 |
| 89. | Undertale | 14,855 | 0.06% | 7 | 19:25:25 |
| 90. | The Legend of Zelda: A Link to the Past | 14,613 | 0.06% | 10 | 18:55:53 |
| 91. | WarioWare, Inc.: Mega Microgames! | 14,441 | 0.06% | 3 | 3:55:34 |
| 92. | Final Fantasy | 14,343 | 0.06% | 2 | 19:03 |
| 93. | Pokemon X and Y | 13,788 | 0.06% | 4 | 2:15:54 |
| 94. | Mega Man: Dr. Wily's Revenge | 13,694 | 0.06% | 4 | 11:21:20 |
| 95. | Super Mario Bros.: The Lost Levels | 13,599 | 0.06% | 1 | 14:52 |
| 96. | Fantasy Zone | 13,276 | 0.05% | 2 | 12:32 |
| 97. | Uninvited | 13,111 | 0.05% | 1 | 8:00 |
| 98. | A Hat in Time | 12,390 | 0.05% | 26 | 1:00:41:52 |
| 99. | Tomb Raider II | 12,237 | 0.05% | 10 | 1:03:58:03 |
| 100. | Left in the Dark: No One on Board | 12,030 | 0.05% | 2 | 21:42 |
