| 1. | Teenage Mutant Ninja Turtles 2: Battle Nexus | 136,298 | 8.83% | 48 | 9:26:04 |
| 2. | Avatar: The Last Airbender | 122,012 | 7.90% | 43 | 13:44:23 |
| 3. | Bleach: The 3rd Phantom | 84,427 | 5.47% | 81 | 1:14:35:21 |
| 4. | Wild Arms 5 | 67,095 | 4.34% | 103 | 2:08:46:43 |
| 5. | Infinite Space | 42,493 | 2.75% | 99 | 2:13:42:33 |
| 6. | 7th Dragon | 39,646 | 2.57% | 177 | 3:00:56:15 |
| 7. | Lunar: Dragon Song | 38,360 | 2.48% | 54 | 22:18:02 |
| 8. | Digimon Adventure: Anode/Cathode Tamer | 37,154 | 2.41% | 15 | 5:39:47 |
| 9. | Zoids: Legacy | 32,512 | 2.11% | 44 | 16:53:23 |
| 10. | Yu-Gi-Oh! Dungeon Dice Monsters | 30,940 | 2.00% | 65 | 17:55:05 |
| 11. | Naruto: Uzumaki Chronicles 2 | 26,718 | 1.73% | 50 | 23:39:56 |
| 12. | Inuyasha: The Secret of the Cursed Mask | 25,969 | 1.68% | 39 | 19:57:16 |
| 13. | Atelier Iris 3: Grand Phantasm | 21,746 | 1.41% | 99 | 2:00:00:06 |
| 14. | Magical Starsign | 21,686 | 1.40% | 88 | 1:16:17:47 |
| 15. | DemiKids: Dark Version | 20,451 | 1.32% | 15 | 6:07:56 |
| 16. | Seven Kingdoms | 19,264 | 1.25% | 208 | 2:16:38:54 |
| 17. | Luminous Arc | 18,445 | 1.19% | 21 | 13:31:38 |
| 18. | The Lord of the Rings: The Third Age | 17,413 | 1.13% | 65 | 1:07:36:02 |
| 19. | The Wizard of Oz: Beyond the Yellow Brick Road | 16,861 | 1.09% | 21 | 11:44:16 |
| 20. | Pokémon Gold and Silver | 14,614 | 0.95% | 917 | 6:18:51:39 |
| 21. | Zoids Saga II | 12,052 | 0.78% | 14 | 8:48:27 |
| 22. | Pokémon Crystal | 12,038 | 0.78% | 506 | 4:02:15:49 |
| 23. | Luminous Arc 2 | 11,499 | 0.74% | 32 | 20:45:48 |
| 24. | Eternal Poison | 10,600 | 0.69% | 66 | 1:16:25:01 |
| 25. | Falling Stars | 10,468 | 0.68% | 15 | 6:29:10 |
| 26. | Inuyasha: Secret of the Divine Jewel | 10,273 | 0.67% | 22 | 9:24:42 |
| 27. | Shaman King: Legacy of the Spirits, Sprinting Wolf | 10,270 | 0.67% | 24 | 6:52:27 |
| 28. | Legionwood: Tale of the Two Swords | 10,101 | 0.65% | 25 | 17:56:22 |
| 29. | RPG Maker 2003 | 9,317 | 0.60% | 205 | 3:03:29:44 |
| 30. | Sands of Destruction | 8,483 | 0.55% | 58 | 23:18:51 |
| 31. | Naruto: Path of the Ninja 2 | 8,479 | 0.55% | 12 | 5:53:42 |
| 32. | Atelier Iris 2: The Azoth of Destiny | 8,007 | 0.52% | 96 | 1:20:13:14 |
| 33. | Wild Arms Alter Code: F | 7,924 | 0.51% | 107 | 2:00:52:59 |
| 34. | Dinosaur King | 5,235 | 0.34% | 17 | 5:32:49 |
| 35. | Rome: Total War | 5,075 | 0.33% | 250 | 3:18:53:37 |
| 36. | Atelier Iris: Eternal Mana | 5,038 | 0.33% | 75 | 1:11:48:09 |
| 37. | Digimon World Dawn and Dusk | 4,931 | 0.32% | 29 | 13:05:22 |
| 38. | Breath of Fire II | 4,815 | 0.31% | 50 | 19:21:53 |
| 39. | Phantom Brave | 4,739 | 0.31% | 43 | 15:11:24 |
| 40. | Disgaea 2: Cursed Memories | 4,708 | 0.30% | 107 | 1:11:22:19 |
| 41. | RPG Maker | 4,592 | 0.30% | 18 | 8:41:37 |
| 42. | Hoshigami: Ruining Blue Earth Remix | 4,209 | 0.27% | 47 | 19:05:54 |
| 43. | Fullmetal Alchemist and the Broken Angel | 4,125 | 0.27% | 44 | 15:27:27 |
| 44. | Sonic Chronicles: The Dark Brotherhood | 4,094 | 0.27% | 40 | 22:26:31 |
| 45. | Final Fantasy | 4,058 | 0.26% | 101 | 1:19:33:47 |
| 46. | Yu-Gi-Oh! Ultimate Masters: World Championship Tournament 2006 | 4,042 | 0.26% | 113 | 16:27:01 |
| 47. | Vampire Legends: The True Story of Kisilova | 4,021 | 0.26% | 18 | 10:07:06 |
| 48. | MS Saga: A New Dawn | 3,890 | 0.25% | 76 | 1:15:23:11 |
| 49. | Age of Empires II: The Age of Kings | 3,828 | 0.25% | 116 | 1:12:01:56 |
| 50. | Shin Megami Tensei: Strange Journey | 3,642 | 0.24% | 66 | 1:04:46:33 |
| 51. | Dinosaur King | 3,585 | 0.23% | 9 | 1:25:37 |
| 52. | History Great Empires: Rome | 3,425 | 0.22% | 14 | 5:23:37 |
| 53. | Jagged Alliance 3 | 3,309 | 0.21% | 10 | 5:26:36 |
| 54. | Robopon | 3,253 | 0.21% | 17 | 7:31:14 |
| 55. | Pokémon Ruby and Sapphire | 3,230 | 0.21% | 171 | 1:11:20:48 |
| 56. | Pokémon FireRed and LeafGreen | 2,676 | 0.17% | 179 | 1:11:12:02 |
| 57. | Seven Kingdoms II: The Fryhtan Wars | 2,669 | 0.17% | 2 | 19:09 |
| 58. | Mana Khemia: Alchemists of Al-Revis | 2,638 | 0.17% | 92 | 1:16:43:47 |
| 59. | Deer Avenger 2: Deer in the City | 2,629 | 0.17% | 3 | 42:49 |
| 60. | Two Worlds | 2,482 | 0.16% | 64 | 1:01:43:35 |
| 61. | Tales of Legendia | 2,466 | 0.16% | 115 | 2:04:34:55 |
| 62. | Final Fantasy IV: The After Years | 2,441 | 0.16% | 19 | 9:17:49 |
| 63. | Ranma 1/2: Akanekodan-teki Hihou | 2,414 | 0.16% | 7 | 1:36:18 |
| 64. | Wild Arms 4 | 2,381 | 0.15% | 55 | 23:55:42 |
| 65. | My World, My Way | 2,324 | 0.15% | 30 | 15:20:24 |
| 66. | Harry Potter and the Philosopher's Stone | 2,170 | 0.14% | 48 | 9:39:59 |
| 67. | Naruto: Uzumaki Chronicles | 1,977 | 0.13% | 49 | 13:47:16 |
| 68. | Sailor Moon | 1,970 | 0.13% | 12 | 5:16:20 |
| 69. | Entropy | 1,964 | 0.13% | 1 | 42:37 |
| 70. | Dual Hearts | 1,949 | 0.13% | 36 | 16:30:03 |
| 71. | Shaman King: Legacy of the Spirits, Soaring Hawk | 1,904 | 0.12% | 11 | 4:23:55 |
| 72. | The Legend of Zelda: Twilight Princess | 1,884 | 0.12% | 13 | 3:48:33 |
| 73. | Ys: The Ark of Napishtim | 1,837 | 0.12% | 41 | 19:08:10 |
| 74. | Yu-Gi-Oh! True Duel Monsters: Sealed Memories | 1,813 | 0.12% | 76 | 23:56:20 |
| 75. | Fire Emblem: The Binding Blade | 1,787 | 0.12% | 31 | 12:58:17 |
| 76. | Winged Sakura: Demon Civil War | 1,732 | 0.11% | 19 | 5:30:51 |
| 77. | Fullmetal Alchemist 2: Curse of the Crimson Elixir | 1,687 | 0.11% | 42 | 13:51:33 |
| 78. | Family Man | 1,579 | 0.10% | 1 | 6:19 |
| 79. | Shining Soul II | 1,487 | 0.10% | 41 | 9:31:12 |
| 80. | Evolution Worlds | 1,476 | 0.10% | 18 | 11:07:56 |
| 81. | Pokémon Emerald | 1,440 | 0.09% | 86 | 1:02:52:10 |
| 82. | Dragon Fantasy | 1,439 | 0.09% | 28 | 15:05:50 |
| 83. | Digimon World Data Squad | 1,399 | 0.09% | 19 | 11:08:06 |
| 84. | Wild Arms 3 | 1,344 | 0.09% | 47 | 22:48:32 |
| 85. | Pokémon Yellow | 1,325 | 0.09% | 118 | 19:20:08 |
| 86. | RPG Maker XP | 1,276 | 0.08% | 55 | 20:04:21 |
| 87. | IGPX: Immortal Grand Prix | 1,232 | 0.08% | 13 | 3:41:12 |
| 88. | Etrian Odyssey | 1,176 | 0.08% | 51 | 18:58:58 |
| 89. | Pokémon Red and Blue | 1,172 | 0.08% | 162 | 1:08:27:39 |
| 90. | Dark Chronicle | 1,169 | 0.08% | 97 | 1:14:09:55 |
| 91. | TMNT | 1,147 | 0.07% | 12 | 5:08:13 |
| 92. | Pryzm: Chapter One - The Dark Unicorn | 1,146 | 0.07% | 9 | 1:05:27 |
| 93. | Yu Yu Hakusho: Tournament Tactics | 1,130 | 0.07% | 33 | 11:21:47 |
| 94. | Jade Cocoon 2 | 1,129 | 0.07% | 52 | 1:00:19:36 |
| 95. | Sigma Star Saga | 1,112 | 0.07% | 32 | 7:55:49 |
| 96. | Disgaea: Hour of Darkness | 1,102 | 0.07% | 110 | 1:17:02:43 |
| 97. | My Little Pony: Friendship Is Magic | 1,100 | 0.07% | 13 | 4:02:39 |
| 98. | Advance Wars 2: Black Hole Rising | 1,095 | 0.07% | 42 | 1:04:36:39 |
| 99. | Izuna: Legend of the Unemployed Ninja | 1,094 | 0.07% | 9 | 3:09:59 |
| 100. | Dragon Ball Z: Budokai 3 | 1,094 | 0.07% | 21 | 6:47:00 |
