| 1. | Super Monkey Ball | 954,155 | 24.28% | 5 | 2:51:42 |
| 2. | Gradius III | 379,835 | 9.67% | 15 | 3:05:13 |
| 3. | Wonder Boy in Monster Land | 252,771 | 6.43% | 1 | 51:23 |
| 4. | 1943: The Battle of Midway | 248,498 | 6.32% | 4 | 2:08:23 |
| 5. | Gradius II | 210,547 | 5.36% | 7 | 3:07:56 |
| 6. | Mischief Makers | 207,669 | 5.29% | 5 | 3:00:20 |
| 7. | Gradius IV | 198,331 | 5.05% | 13 | 3:05:07 |
| 8. | Gradius V | 192,298 | 4.89% | 5 | 3:01:57 |
| 9. | Killer7 | 178,978 | 4.56% | 11 | 9:24:35 |
| 10. | 1942 | 127,965 | 3.26% | 4 | 1:09:30 |
| 11. | Gradius Gaiden | 124,379 | 3.17% | 3 | 2:21:40 |
| 12. | Kirby's Dream Land 3 | 121,437 | 3.09% | 5 | 2:40:33 |
| 13. | Mario Bros. | 109,601 | 2.79% | 2 | 1:38:02 |
| 14. | Gradius | 83,101 | 2.12% | 2 | 18:29 |
| 15. | Star Fox | 66,874 | 1.70% | 4 | 2:25:15 |
| 16. | Carrier Air Wing | 65,577 | 1.67% | 1 | 50:03 |
| 17. | Tetris 2 | 46,593 | 1.19% | 6 | 2:19:25 |
| 18. | 1943 Kai: Midway Kaisen | 33,830 | 0.86% | 4 | 1:23:42 |
| 19. | Salamander | 33,711 | 0.86% | 2 | 1:00:55 |
| 20. | Gradius ReBirth | 27,677 | 0.70% | 8 | 1:05:46 |
| 21. | Nemesis 3: The Eve of Destruction | 22,057 | 0.56% | 7 | 1:00:05 |
| 22. | Shiren the Wanderer | 20,532 | 0.52% | 4 | 1:58:19 |
| 23. | Parodius! From Myth to Laughter | 20,261 | 0.52% | 2 | 37:34 |
| 24. | Gain Ground | 19,772 | 0.50% | 2 | 53:07 |
| 25. | Radiant Silvergun | 15,928 | 0.41% | 5 | 3:54:02 |
| 26. | 1941: Counter Attack | 15,736 | 0.40% | 1 | 26:17 |
| 27. | The Legend of Zelda: Majora's Mask | 14,519 | 0.37% | 11 | 7:54:41 |
| 28. | Cave Story | 12,030 | 0.31% | 6 | 3:14:47 |
| 29. | Bomberman 64 | 11,448 | 0.29% | 8 | 4:44:55 |
| 30. | Donkey Kong Country 2 | 10,916 | 0.28% | 7 | 3:32:53 |
| 31. | Star Fox 64 | 10,455 | 0.27% | 1 | 58:51 |
| 32. | Sin and Punishment | 10,279 | 0.26% | 1 | 1:19:34 |
| 33. | Darius Gaiden | 9,494 | 0.24% | 3 | 28:22 |
| 34. | Wario Blast | 9,156 | 0.23% | 3 | 3:16:45 |
| 35. | Mega Man Legends | 8,528 | 0.22% | 10 | 6:58:01 |
| 36. | Metal Black | 7,919 | 0.20% | 4 | 32:50 |
| 37. | Twinkle Star Sprites | 3,951 | 0.10% | 2 | 19:47 |
| 38. | Kirby's Return to Dream Land | 3,677 | 0.09% | 8 | 4:29:28 |
| 39. | Battle Garegga | 3,518 | 0.09% | 5 | 1:32:39 |
| 40. | Donkey Kong Country 3 | 3,445 | 0.09% | 8 | 4:35:56 |
| 41. | Eco Fighters | 3,323 | 0.08% | 1 | 33:59 |
| 42. | The Embodiment of Scarlet Devil | 3,214 | 0.08% | 3 | 1:41:49 |
| 43. | Pikmin | 3,165 | 0.08% | 9 | 2:49:49 |
| 44. | DoDonPachi: Dai-Ou-Jou | 1,973 | 0.05% | 2 | 1:14:00 |
| 45. | Castlevania III: Dracula's Curse | 1,894 | 0.05% | 4 | 2:10:00 |
| 46. | Metroid II: Return of Samus | 1,591 | 0.04% | 5 | 1:42:54 |
| 47. | The Legend of Zelda: Four Swords Adventures | 1,559 | 0.04% | 1 | 28:16 |
| 48. | Donkey Kong Country | 1,541 | 0.04% | 6 | 1:59:15 |
| 49. | The Legend of Zelda: Oracle of Ages | 1,409 | 0.04% | 10 | 9:02:15 |
| 50. | FTL: Faster Than Light | 1,314 | 0.03% | 1 | 1:44:43 |
| 51. | The Legend of Zelda: Oracle of Seasons | 1,272 | 0.03% | 9 | 6:10:39 |
| 52. | ZeroRanger | 1,262 | 0.03% | 3 | 52:01 |
| 53. | The Legend of Zelda: A Link to the Past | 1,090 | 0.03% | 12 | 5:35:19 |
| 54. | Imperishable Night | 1,004 | 0.03% | 1 | 45:17 |
| 55. | Gunstar Heroes | 1,000 | 0.03% | 1 | 1:10:15 |
| 56. | Super Castlevania IV | 998 | 0.03% | 3 | 1:37:02 |
| 57. | Street Fighter III | 818 | 0.02% | 2 | 1:09:33 |
| 58. | DoDonPachi SaiDaiOuJou | 807 | 0.02% | 1 | 12:42 |
| 59. | Ketsui: Kizuna Jigoku Tachi | 711 | 0.02% | 1 | 22:06 |
| 60. | Mega Man 2 | 493 | 0.01% | 2 | 54:15 |
| 61. | Mega Man 3 | 370 | 0.01% | 2 | 1:06:32 |
| 62. | Perfect Cherry Blossom | 319 | 0.01% | 1 | 1:28:52 |
