| 1. | Super Mario World | 3,418,625 | 42.19% | 27 | 31:32 |
| 2. | Super Mario 64 | 1,187,658 | 14.66% | 39 | 1:03:42 |
| 3. | Yoshi's Island | 292,585 | 3.61% | 7 | 16:42 |
| 4. | The Legend of Zelda: A Link to the Past | 250,051 | 3.09% | 14 | 42:49 |
| 5. | Sonic CD | 233,243 | 2.88% | 6 | 16:51 |
| 6. | Super Mario RPG | 226,175 | 2.79% | 7 | 21:39 |
| 7. | Super Mario All-Stars | 183,062 | 2.26% | 3 | 3:10 |
| 8. | Star Fox | 150,623 | 1.86% | 7 | 8:47 |
| 9. | Super Mario Kart | 144,246 | 1.78% | 3 | 4:10 |
| 10. | Super Mario 64 DS | 112,381 | 1.39% | 9 | 14:50 |
| 11. | GoldenEye 007 | 110,134 | 1.36% | 7 | 1:14:14 |
| 12. | Mario Paint | 90,943 | 1.12% | 1 | 1:55 |
| 13. | SimCity | 83,181 | 1.03% | 20 | 25:10 |
| 14. | Mario Kart 64 | 82,887 | 1.02% | 5 | 11:07 |
| 15. | Mario & Luigi: Bowser's Inside Story | 76,234 | 0.94% | 7 | 18:36 |
| 16. | Lego Island | 73,386 | 0.91% | 2 | 1:36 |
| 17. | Sonic Advance | 59,841 | 0.74% | 5 | 9:58 |
| 18. | Kirby Super Star | 56,720 | 0.70% | 3 | 8:08 |
| 19. | Super Mario World 2: Yoshi's Island | 56,352 | 0.70% | 2 | 0:17 |
| 20. | Sonic & Knuckles | 56,062 | 0.69% | 6 | 3:59:52 |
| 21. | Super Metroid | 54,435 | 0.67% | 6 | 12:32 |
| 22. | F-Zero | 54,059 | 0.67% | 6 | 8:42 |
| 23. | Pokémon Diamond and Pearl | 50,007 | 0.62% | 10 | 5:58:54 |
| 24. | Pokémon Emerald | 46,181 | 0.57% | 7 | 5:39:44 |
| 25. | Conker's Bad Fur Day | 44,879 | 0.55% | 8 | 17:09 |
| 26. | Mario Kart DS | 42,768 | 0.53% | 2 | 4:04 |
| 27. | Sonic Jam | 42,345 | 0.52% | 3 | 6:00 |
| 28. | Mario & Luigi: Superstar Saga | 41,682 | 0.51% | 2 | 4:14 |
| 29. | Pokémon HeartGold and SoulSilver | 40,953 | 0.51% | 6 | 4:00:17 |
| 30. | Mario Kart: Super Circuit | 40,494 | 0.50% | 1 | 1:09:03 |
| 31. | The Legend of Zelda: Spirit Tracks | 35,938 | 0.44% | 10 | 43:00 |
| 32. | Star Fox Adventures | 35,151 | 0.43% | 14 | 47:02 |
| 33. | Super Smash Bros. Melee | 34,580 | 0.43% | 3 | 1:19 |
| 34. | Kirby Super Star Ultra | 23,033 | 0.28% | 1 | 1:11 |
| 35. | Pokémon FireRed and LeafGreen | 22,860 | 0.28% | 2 | 2:59:38 |
| 36. | The Legend of Zelda: Ocarina of Time | 22,250 | 0.27% | 2 | 2:53 |
| 37. | Super Mario Bros. | 19,834 | 0.24% | 1 | 0:46 |
| 38. | Kirby's Dream Course | 17,963 | 0.22% | 4 | 3:20 |
| 39. | The Legend of Zelda: Twilight Princess | 17,784 | 0.22% | 2 | 8:25 |
| 40. | Banjo-Kazooie | 17,370 | 0.21% | 6 | 24:27 |
| 41. | Paper Mario | 16,549 | 0.20% | 2 | 3:48 |
| 42. | The Legend of Zelda: The Minish Cap | 14,631 | 0.18% | 3 | 5:57 |
| 43. | Sonic Advance 2 | 14,405 | 0.18% | 2 | 4:23 |
| 44. | Sonic the Hedgehog | 13,041 | 0.16% | 1 | 11:39 |
| 45. | The Legend of Zelda: Phantom Hourglass | 12,105 | 0.15% | 3 | 7:54 |
| 46. | Pokémon Puzzle League | 11,588 | 0.14% | 6 | 13:12 |
| 47. | Plok | 11,315 | 0.14% | 1 | 7:32 |
| 48. | Sonic the Hedgehog 2 | 10,117 | 0.12% | 1 | 46:05 |
| 49. | Sonic 3D Blast | 10,027 | 0.12% | 2 | 3:28 |
| 50. | Donkey Kong 64 | 9,869 | 0.12% | 2 | 6:18 |
| 51. | Puyo Puyo Sun | 9,233 | 0.11% | 1 | 2:00 |
| 52. | The Legend of Zelda: Link's Awakening | 8,984 | 0.11% | 1 | 1:32 |
| 53. | Earthbound | 8,975 | 0.11% | 1 | 2:01 |
| 54. | Sonic Rush Adventure | 8,776 | 0.11% | 1 | 3:08 |
| 55. | Pac-Man 2: The New Adventures | 6,516 | 0.08% | 1 | 2:13 |
| 56. | Sonic the Fighters | 5,938 | 0.07% | 1 | 0:08 |
| 57. | Metroid Prime | 5,471 | 0.07% | 2 | 2:07 |
| 58. | Diddy Kong Racing | 4,949 | 0.06% | 1 | 1:12 |
| 59. | Sonic the Hedgehog 3 | 4,941 | 0.06% | 1 | 2:25 |
| 60. | Myst | 4,578 | 0.06% | 1 | 0:25 |
| 61. | Rhythm Heaven | 4,444 | 0.05% | 1 | 1:18 |
| 62. | Metroid Prime 2: Echoes | 4,194 | 0.05% | 1 | 4:29 |
| 63. | Pokémon Platinum | 3,973 | 0.05% | 1 | 2:25 |
| 64. | Banjo-Tooie | 3,233 | 0.04% | 1 | 4:52 |
| 65. | Arcana | 2,745 | 0.03% | 2 | 2:01 |
