| 1. | Super Mario 64 | 2,103,520 | 23.90% | 207 | 13:08:30 |
| 2. | Castlevania: Aria of Sorrow | 1,276,345 | 14.50% | 2 | 49:54 |
| 3. | Mega Man X3 | 808,367 | 9.18% | 2 | 1:41:52 |
| 4. | Castlevania: Harmony of Dissonance | 391,239 | 4.44% | 3 | 40:35 |
| 5. | Donkey Kong Country 2 | 382,505 | 4.35% | 2 | 1:39:46 |
| 6. | International Superstar Soccer Deluxe | 339,836 | 3.86% | 1 | 15:28 |
| 7. | Bomberman 64 | 287,182 | 3.26% | 4 | 2:04:46 |
| 8. | Mario Party 4 | 273,789 | 3.11% | 1 | 2:42 |
| 9. | Super Bomberman 5 | 272,976 | 3.10% | 1 | 12:02 |
| 10. | Castlevania: Circle of the Moon | 234,207 | 2.66% | 2 | 31:29 |
| 11. | Mega Man Zero | 186,921 | 2.12% | 2 | 41:58 |
| 12. | Mega Man & Bass | 160,449 | 1.82% | 1 | 31:17 |
| 13. | Super Mario World | 153,336 | 1.74% | 3 | 27:20 |
| 14. | Donkey Kong Country | 139,487 | 1.58% | 3 | 37:19 |
| 15. | Mario Party 6 | 136,940 | 1.56% | 4 | 2:36 |
| 16. | The Legend of Zelda: Ocarina of Time | 113,218 | 1.29% | 8 | 1:31:40 |
| 17. | Super Bomberman 2 | 104,880 | 1.19% | 1 | 20:50 |
| 18. | Goemon's Great Adventure | 93,182 | 1.06% | 1 | 1:25:27 |
| 19. | Salamander | 84,430 | 0.96% | 2 | 23:57 |
| 20. | Castlevania: Dracula X | 80,191 | 0.91% | 1 | 16:29 |
| 21. | Yoshi's Story | 68,789 | 0.78% | 2 | 34:56 |
| 22. | Chrono Trigger | 68,073 | 0.77% | 1 | 25:31 |
| 23. | Castlevania | 61,445 | 0.70% | 1 | 12:51 |
| 24. | Super Mario Sunshine | 46,048 | 0.52% | 4 | 5:01 |
| 25. | Chameleon Twist 2 | 41,077 | 0.47% | 1 | 25:35 |
| 26. | Super Fantasy Zone | 37,807 | 0.43% | 1 | 9:16 |
| 27. | Tony Hawk's Pro Skater | 32,542 | 0.37% | 1 | 13:55 |
| 28. | Super Monkey Ball | 30,464 | 0.35% | 8 | 4:47 |
| 29. | Tony Hawk's Pro Skater 2 | 26,749 | 0.30% | 1 | 11:15 |
| 30. | Kirby's Adventure | 25,243 | 0.29% | 2 | 16:45 |
| 31. | Dragon's Lair | 21,588 | 0.25% | 1 | 11:06 |
| 32. | Super Mario World 2: Yoshi's Island | 21,197 | 0.24% | 1 | 10:24 |
| 33. | Super Mario Bros. | 19,318 | 0.22% | 2 | 1:01 |
| 34. | Kirby 64: The Crystal Shards | 17,953 | 0.20% | 5 | 5:26 |
| 35. | Mega Man X | 17,203 | 0.20% | 1 | 34:40 |
| 36. | Super Mario Bros. 2 | 16,981 | 0.19% | 2 | 21:50 |
| 37. | Ninja Gaiden II: The Dark Sword of Chaos | 13,609 | 0.15% | 1 | 17:09 |
| 38. | Chameleon Twist | 13,038 | 0.15% | 1 | 14:46 |
| 39. | The Legend of Zelda: A Link to the Past | 12,018 | 0.14% | 1 | 12:32 |
| 40. | Donkey Kong | 11,816 | 0.13% | 2 | 1:41 |
| 41. | Castlevania | 10,389 | 0.12% | 3 | 19:54 |
| 42. | Donkey Kong 64 | 10,257 | 0.12% | 1 | 1:09 |
| 43. | Ninja Five-O | 9,901 | 0.11% | 1 | 19:30 |
| 44. | Crash Bandicoot | 9,682 | 0.11% | 1 | 47:46 |
| 45. | Sonic Advance 2 | 9,536 | 0.11% | 1 | 21:55 |
| 46. | osu! | 8,535 | 0.10% | 1 | 4:13 |
| 47. | Metroid | 7,464 | 0.08% | 2 | 24:11 |
| 48. | The Legend of Zelda | 7,167 | 0.08% | 1 | 26:21 |
| 49. | Mario Kart 64 | 6,606 | 0.08% | 1 | 1:01 |
| 50. | Bionic Commando | 6,000 | 0.07% | 1 | 16:22 |
| 51. | Diddy Kong Racing | 5,552 | 0.06% | 2 | 0:54 |
| 52. | Super Turrican | 5,515 | 0.06% | 2 | 31:55 |
| 53. | Syvalion | 4,360 | 0.05% | 1 | 10:46 |
| 54. | Super Smash Bros. | 4,283 | 0.05% | 2 | 0:57 |
| 55. | Banjo-Kazooie | 4,235 | 0.05% | 1 | 2:51 |
| 56. | Superman | 3,658 | 0.04% | 1 | 0:42 |
| 57. | Poly Bridge 2 | 2,913 | 0.03% | 1 | 0:14 |
| 58. | Mario Bros. | 2,688 | 0.03% | 2 | 3:14 |
| 59. | Super Smash Bros. Melee | 2,395 | 0.03% | 1 | 0:31 |
| 60. | Mario Party 3 | 1,904 | 0.02% | 1 | 0:36 |
| 61. | Tetris | 1,845 | 0.02% | 1 | 1:04 |
| 62. | Deep Freeze | 1,660 | 0.02% | 1 | 0:10 |
| 63. | Perfect Cherry Blossom | 1,597 | 0.02% | 1 | 1:15 |
