| 1. | Super Mario Bros. 3 | 3,013,212 | 19.92% | 95 | 8:06:21 |
| 2. | Romance of the Three Kingdoms | 702,298 | 4.64% | 19 | 9:13:41 |
| 3. | Ninja Hattori-kun | 674,220 | 4.46% | 9 | 1:34:23 |
| 4. | SimCity | 554,621 | 3.67% | 52 | 2:14:11:29 |
| 5. | Fire Emblem: Mystery of the Emblem | 474,771 | 3.14% | 4 | 28:07 |
| 6. | Final Fantasy Legend II | 245,427 | 1.62% | 13 | 9:16:19 |
| 7. | Ace Combat 3: Electrosphere | 185,712 | 1.23% | 15 | 12:36:10 |
| 8. | SimCity 2000 | 166,494 | 1.10% | 33 | 1:06:07:59 |
| 9. | Game Boy Wars | 154,593 | 1.02% | 90 | 12:14:38:26 |
| 10. | Final Fantasy Legend III | 150,792 | 1.00% | 20 | 12:13:10 |
| 11. | Salamander | 102,647 | 0.68% | 2 | 54:31 |
| 12. | Nobunaga's Ambition: Lord of Darkness | 81,267 | 0.54% | 8 | 27:22 |
| 13. | Wai Wai World | 76,290 | 0.50% | 6 | 2:04:08 |
| 14. | Final Fantasy VIII | 71,921 | 0.48% | 47 | 1:00:51:01 |
| 15. | The Legend of Zelda | 68,394 | 0.45% | 11 | 19:11:18 |
| 16. | Sakura Wars 4: Fall in Love, Maidens | 55,141 | 0.36% | 56 | 1:07:24:25 |
| 17. | Elevator Action | 47,685 | 0.32% | 1 | 15:09 |
| 18. | Chubby Cherub | 47,465 | 0.31% | 1 | 35:08 |
| 19. | Ace Combat 2 | 42,006 | 0.28% | 4 | 5:04:03 |
| 20. | Bakumatsu Kourin Den: Oni | 38,467 | 0.25% | 11 | 22:57:23 |
| 21. | Famicom Jump: Hero Retsuden | 36,493 | 0.24% | 2 | 2:17:15 |
| 22. | Super Metroid | 32,790 | 0.22% | 5 | 6:05:06 |
| 23. | Sakura Taisen 2: Kimi, Shinitamou koto Nakare | 30,814 | 0.20% | 22 | 1:06:03:09 |
| 24. | Famicom Wars | 29,106 | 0.19% | 7 | 1:01:47:21 |
| 25. | X | 20,347 | 0.13% | 4 | 1:19:42 |
| 26. | The Earth Fighter Rayieza | 18,308 | 0.12% | 1 | 1:09:42 |
| 27. | Metal Max | 16,886 | 0.11% | 5 | 6:35:21 |
| 28. | Mario Golf | 14,495 | 0.10% | 3 | 46:14 |
| 29. | Super Mario Bros. | 14,366 | 0.09% | 5 | 2:26:46 |
| 30. | Metal Max Returns | 11,118 | 0.07% | 4 | 7:34:13 |
| 31. | Super Mario World | 11,063 | 0.07% | 1 | 2:41 |
| 32. | Street Fighter II | 10,924 | 0.07% | 20 | 7:50:17 |
| 33. | Godzilla | 7,948 | 0.05% | 3 | 3:19:21 |
| 34. | Aretha | 7,826 | 0.05% | 6 | 13:51:05 |
| 35. | Pikmin 2 | 7,729 | 0.05% | 21 | 5:35:49 |
| 36. | Aretha III | 7,303 | 0.05% | 3 | 7:14:31 |
| 37. | Oni II: Innin Densetsu | 6,896 | 0.05% | 12 | 11:14:51 |
| 38. | Super Chinese World 2 | 6,844 | 0.05% | 3 | 5:14:40 |
| 39. | NOBUNAGA'S AMBITION: Sphere of Influence | 6,621 | 0.04% | 1 | 4:16 |
| 40. | The Legend of Zelda: Link's Awakening | 5,662 | 0.04% | 14 | 12:35:35 |
| 41. | Aretha II | 5,431 | 0.04% | 4 | 8:54:39 |
| 42. | Wizardry III: Legacy of Llylgamyn | 5,070 | 0.03% | 2 | 1:57:53 |
| 43. | Final Fantasy | 4,465 | 0.03% | 3 | 2:50:13 |
| 44. | Ninja Kid | 4,254 | 0.03% | 1 | 1:03:25 |
| 45. | Aretha: The Super Famicom | 4,138 | 0.03% | 1 | 2:26:07 |
| 46. | Oni | 4,120 | 0.03% | 1 | 4:50 |
| 47. | Final Fantasy VII | 4,104 | 0.03% | 32 | 0:00 |
| 48. | Sakura Wars: So Long, My Love | 3,978 | 0.03% | 18 | 1:13:43:10 |
| 49. | Wizardry V: Heart of the Maelstrom | 3,971 | 0.03% | 3 | 3:32:25 |
| 50. | The Final Fantasy Legend | 3,964 | 0.03% | 4 | 4:18:37 |
| 51. | Kaeru no Tame ni Kane wa Naru | 3,684 | 0.02% | 5 | 5:26:41 |
| 52. | Final Fantasy III | 3,505 | 0.02% | 3 | 1:44:51 |
| 53. | Dragon Quest Monsters | 3,196 | 0.02% | 2 | 3:38:38 |
| 54. | Sakura Taisen | 2,985 | 0.02% | 7 | 13:59:41 |
| 55. | Wizardry | 2,826 | 0.02% | 1 | 16:20 |
| 56. | The Legend of Zelda: A Link to the Past | 2,687 | 0.02% | 7 | 6:56:34 |
| 57. | Final Fantasy VI | 2,384 | 0.02% | 6 | 16:25:27 |
| 58. | Super Mario RPG | 2,356 | 0.02% | 8 | 10:27:54 |
| 59. | Milon's Secret Castle | 2,355 | 0.02% | 2 | 2:05:15 |
| 60. | Chrono Trigger | 2,266 | 0.01% | 16 | 17:21:03 |
| 61. | Miracle Warriors: Seal of the Dark Lord | 2,174 | 0.01% | 2 | 1:01:38 |
| 62. | Wizardry VI: Bane of the Cosmic Forge | 2,119 | 0.01% | 4 | 11:23:01 |
| 63. | Metroid II: Return of Samus | 2,102 | 0.01% | 1 | 2:33:25 |
| 64. | J. League Soccer Prime Goal | 2,081 | 0.01% | 1 | 2:20:30 |
| 65. | The Legend of Zelda: Ocarina of Time | 1,921 | 0.01% | 10 | 0:00 |
| 66. | Oni III: Kuro no Hakaishin | 1,911 | 0.01% | 5 | 8:27:10 |
| 67. | Sakura Wars | 1,859 | 0.01% | 21 | 1:00:49:39 |
| 68. | Astro Boy: Omega Factor | 1,799 | 0.01% | 4 | 45:53 |
| 69. | Tales of the Abyss | 1,658 | 0.01% | 14 | 1:14:55:18 |
| 70. | Momotaro Dentetsu | 1,441 | 0.01% | 1 | 4:01 |
| 71. | Godzilla: Monster of Monsters | 1,276 | 0.01% | 1 | 25:01 |
| 72. | Wizardry II: The Knight of Diamonds | 1,243 | 0.01% | 1 | 1:13:34 |
| 73. | Super Dodge Ball | 1,238 | 0.01% | 1 | 1:10:46 |
| 74. | Tales of Berseria | 1,205 | 0.01% | 12 | 1:10:12:14 |
| 75. | Tales of Phantasia | 1,140 | 0.01% | 9 | 19:21:13 |
| 76. | Pipe Dream | 1,123 | 0.01% | 1 | 1:02:08 |
| 77. | The Legend of Zelda: The Wind Waker | 1,088 | 0.01% | 12 | 0:00 |
| 78. | Tales of Vesperia | 997 | 0.01% | 12 | 1:09:11:14 |
| 79. | Jungle Wars 2: Kodai MahM Atimos no Nazo | 977 | 0.01% | 4 | 8:17:56 |
| 80. | Dragon Ball Z II: Gekishin Freeza!! | 968 | 0.01% | 2 | 3:59:28 |
| 81. | Super Mario Land 2: 6 Golden Coins | 778 | 0.01% | 1 | 1:12:00 |
| 82. | Wizardry: Proving Grounds of the Mad Overlord | 776 | 0.01% | 1 | 1:14:51 |
| 83. | Mega Man II | 763 | 0.01% | 1 | 42:00 |
| 84. | Captain Silver | 762 | 0.01% | 1 | 17:49 |
| 85. | Ace Combat 04: Shattered Skies | 745 | 0.00% | 6 | 4:54:18 |
| 86. | Deep Dungeon IV: Kuro no Youjutsushi | 728 | 0.00% | 2 | 3:19:13 |
| 87. | Dragon Ball Z: Kyoushuu! Saiyajin | 660 | 0.00% | 2 | 4:13:55 |
| 88. | Super Ninja Boy | 659 | 0.00% | 3 | 5:31:31 |
| 89. | Shadow Brain | 598 | 0.00% | 1 | 11:09 |
| 90. | Mario's Picross | 586 | 0.00% | 5 | 8:07:20 |
| 91. | Quarth | 546 | 0.00% | 1 | 1:04:12 |
| 92. | Dragon Ball Z Side Story: Plan to Eradicate the Saiyans | 542 | 0.00% | 2 | 4:11:08 |
| 93. | Kirby's Dream Land | 535 | 0.00% | 1 | 23:55 |
| 94. | TM Network: Live in Power Bowl | 510 | 0.00% | 1 | 1:31:03 |
| 95. | Dragon Ball 3: Gokuden | 506 | 0.00% | 2 | 4:09:22 |
| 96. | Kung Fu Heroes | 503 | 0.00% | 1 | 46:27 |
| 97. | The Goonies | 478 | 0.00% | 1 | 25:22 |
| 98. | Final Fantasy IX | 466 | 0.00% | 1 | 0:00 |
| 99. | Dragon Ball Z III: Ressen Jinzou Ningen | 446 | 0.00% | 1 | 2:32:52 |
| 100. | Pikmin | 423 | 0.00% | 7 | 0:00 |
