| 1. | Pokémon Mystery Dungeon: Blue Rescue Team and Red Rescue Team | 2,294,598 | 40.36% | 251 | 2:00:12:50 |
| 2. | Pokémon Rumble | 379,301 | 6.67% | 38 | 11:51:07 |
| 3. | PokéPark Wii: Pikachu's Adventure | 302,998 | 5.33% | 36 | 10:11:28 |
| 4. | Pokémon Trading Card Game | 233,446 | 4.11% | 40 | 13:49:03 |
| 5. | Pokémon Red and Blue | 215,845 | 3.80% | 78 | 17:52:09 |
| 6. | Pokémon Gold and Silver | 119,348 | 2.10% | 35 | 17:52:53 |
| 7. | Pokémon Colosseum | 110,672 | 1.95% | 44 | 13:36:47 |
| 8. | Pokémon Card GB2: GR-dan Sanjou! | 107,200 | 1.89% | 47 | 21:56:17 |
| 9. | Pokémon Battle Revolution | 89,875 | 1.58% | 13 | 5:30:26 |
| 10. | PokéPark 2: Wonders Beyond | 54,283 | 0.95% | 33 | 11:25:27 |
| 11. | Kirby: Squeak Squad | 52,996 | 0.93% | 9 | 2:06:21 |
| 12. | Tomodachi Life | 41,105 | 0.72% | 80 | 1:08:15:33 |
| 13. | Pokémon Rumble World | 40,507 | 0.71% | 19 | 6:52:55 |
| 14. | Miitopia | 38,758 | 0.68% | 42 | 20:01:37 |
| 15. | Kirby's Adventure | 37,687 | 0.66% | 23 | 5:31:31 |
| 16. | Kirby's Return to Dream Land | 36,561 | 0.64% | 8 | 6:17:42 |
| 17. | Pokémon Sun and Moon | 35,912 | 0.63% | 23 | 9:20:54 |
| 18. | Mega Man | 33,363 | 0.59% | 46 | 11:38:44 |
| 19. | Pokémon Super Mystery Dungeon | 31,004 | 0.55% | 70 | 1:10:27:37 |
| 20. | Pokémon Black and White | 30,015 | 0.53% | 23 | 1:01:51:42 |
| 21. | Rhythm Heaven Megamix | 24,567 | 0.43% | 18 | 7:54:15 |
| 22. | Super Smash Bros. for Wii U | 19,961 | 0.35% | 2 | 1:20:46 |
| 23. | Super Mario Bros. | 17,290 | 0.30% | 13 | 3:49:03 |
| 24. | WarioWare Gold | 17,163 | 0.30% | 11 | 4:44:17 |
| 25. | New Super Mario Bros. 2 | 16,837 | 0.30% | 15 | 5:51:44 |
| 26. | Rhythm Heaven | 15,525 | 0.27% | 9 | 3:09:31 |
| 27. | Pokémon Mystery Dungeon: Gates to Infinity | 15,390 | 0.27% | 71 | 1:05:24:53 |
| 28. | Ufouria: The Saga | 15,029 | 0.26% | 21 | 4:58:44 |
| 29. | Pokémon Puzzle Challenge | 14,675 | 0.26% | 7 | 1:36:36 |
| 30. | Mario Tennis: Ultra Smash | 13,981 | 0.25% | 2 | 29:46 |
| 31. | Chip 'n Dale Rescue Rangers | 13,364 | 0.24% | 6 | 1:20:09 |
| 32. | Pokémon Pinball | 12,501 | 0.22% | 3 | 52:32 |
| 33. | Phoenix Wright: Ace Attorney | 12,461 | 0.22% | 70 | 1:09:57:30 |
| 34. | Mystery Dungeon: Shiren the Wanderer | 12,269 | 0.22% | 15 | 13:27:21 |
| 35. | Drill Dozer | 11,618 | 0.20% | 11 | 2:20:51 |
| 36. | Darkwing Duck | 11,514 | 0.20% | 7 | 1:04:33 |
| 37. | Pokémon Mystery Dungeon: Explorers of Sky | 9,725 | 0.17% | 32 | 15:39:25 |
| 38. | Super Mario Bros. Crossover | 9,121 | 0.16% | 2 | 20:50 |
| 39. | I Wanna Be the Guy | 7,888 | 0.14% | 4 | 39:25 |
| 40. | Pocky & Rocky with Becky | 7,484 | 0.13% | 9 | 1:31:10 |
| 41. | Kirby's Dream Land | 7,394 | 0.13% | 9 | 2:04:14 |
| 42. | Panic Restaurant | 6,811 | 0.12% | 5 | 34:47 |
| 43. | Not Tetris 2 | 6,795 | 0.12% | 1 | 7:55 |
| 44. | Pokémon Rumble U | 6,677 | 0.12% | 13 | 5:27:22 |
| 45. | Ib | 6,419 | 0.11% | 8 | 7:50:20 |
| 46. | The Embodiment of Scarlet Devil | 5,734 | 0.10% | 2 | 14:02 |
| 47. | Super Smash Bros. | 5,692 | 0.10% | 5 | 1:24:41 |
| 48. | NES Remix | 5,495 | 0.10% | 23 | 8:55:46 |
| 49. | Splatterhouse: Wanpaku Graffiti | 5,413 | 0.10% | 4 | 52:00 |
| 50. | The Legend of Zelda: Tri Force Heroes | 4,863 | 0.09% | 12 | 4:20:03 |
| 51. | Pokémon Sword and Shield | 4,625 | 0.08% | 24 | 2:06:33:23 |
| 52. | Gunstar Super Heroes | 4,485 | 0.08% | 7 | 1:02:03 |
| 53. | Ghosts 'n Goblins | 4,410 | 0.08% | 7 | 3:05:25 |
| 54. | Resident Evil 4 | 4,393 | 0.08% | 27 | 10:19:26 |
| 55. | Ice Climber | 4,169 | 0.07% | 8 | 1:52:47 |
| 56. | Mario & Luigi: Paper Jam | 4,043 | 0.07% | 1 | 10:13 |
| 57. | Pokémon Ranger | 3,978 | 0.07% | 8 | 4:59:40 |
| 58. | Dungeon Maker | 3,739 | 0.07% | 1 | 27:48 |
| 59. | Persona Q2: New Cinema Labyrinth | 3,523 | 0.06% | 1 | 17:08 |
| 60. | Mega Man 2 | 3,496 | 0.06% | 7 | 3:01:07 |
| 61. | Puyo Puyo Tetris | 3,466 | 0.06% | 16 | 6:03:56 |
| 62. | Super Smash Bros. for Nintendo 3DS | 3,327 | 0.06% | 3 | 52:19 |
| 63. | Pokémon Snap | 3,315 | 0.06% | 6 | 1:54:58 |
| 64. | Rainbow Islands: The Story of Bubble Bobble 2 | 3,205 | 0.06% | 2 | 34:47 |
| 65. | New Super Luigi U | 3,169 | 0.06% | 14 | 5:12:16 |
| 66. | Children of Mana | 3,125 | 0.05% | 4 | 1:40:30 |
| 67. | Fire Emblem | 2,947 | 0.05% | 6 | 2:12:00 |
| 68. | Sonic the Hedgehog | 2,562 | 0.05% | 3 | 4:13:09 |
| 69. | Pokémon Platinum | 2,397 | 0.04% | 18 | 1:18:12:17 |
| 70. | Hatsune Miku: Project Mirai DX | 2,302 | 0.04% | 1 | 14:09 |
| 71. | WarioWare: Smooth Moves | 2,290 | 0.04% | 5 | 1:58:42 |
| 72. | Super Mario Ball | 2,264 | 0.04% | 1 | 11:58 |
| 73. | Spirit Camera: The Cursed Memoir | 2,196 | 0.04% | 1 | 24:18 |
| 74. | Attack on Titan: Humanity in Chains | 2,170 | 0.04% | 3 | 1:23:02 |
| 75. | Kirby Star Allies | 2,122 | 0.04% | 13 | 6:15:41 |
| 76. | Fatal Frame: Maiden of Black Water | 2,121 | 0.04% | 5 | 2:14:04 |
| 77. | Pokémon Mystery Dungeon: Rescue Team DX | 2,018 | 0.04% | 10 | 1:00:55:03 |
| 78. | Super Ghouls 'n Ghosts | 1,994 | 0.04% | 11 | 3:26:12 |
| 79. | Super Mario Maker | 1,992 | 0.04% | 5 | 2:47:55 |
| 80. | Water Warfare | 1,991 | 0.04% | 1 | 14:21 |
| 81. | Super Mario Advance 4: Super Mario Bros. 3 | 1,965 | 0.03% | 6 | 4:10:03 |
| 82. | Puyo Puyo 2 | 1,925 | 0.03% | 1 | 13:59 |
| 83. | Mega Man 7 | 1,810 | 0.03% | 1 | 9:36 |
| 84. | Cave Story | 1,724 | 0.03% | 12 | 6:59:25 |
| 85. | Spelunker | 1,681 | 0.03% | 4 | 1:17:42 |
| 86. | Splatoon | 1,665 | 0.03% | 4 | 3:44:26 |
| 87. | Super Mario Maker 2 | 1,651 | 0.03% | 2 | 1:22:13 |
| 88. | Super Mario Land | 1,627 | 0.03% | 1 | 28:15 |
| 89. | Shantae: Risky's Revenge | 1,464 | 0.03% | 10 | 2:58:24 |
| 90. | Tales of Phantasia | 1,435 | 0.03% | 5 | 2:03:43 |
| 91. | Yo-Kai Watch | 1,428 | 0.03% | 10 | 18:19:13 |
| 92. | Yoshi's Island: Super Mario Advance 3 | 1,388 | 0.02% | 1 | 3:59 |
| 93. | The Legend of Zelda: Link's Awakening | 1,362 | 0.02% | 5 | 28:33 |
| 94. | Pac-Man | 1,304 | 0.02% | 2 | 16:22 |
| 95. | METALLIC CHILD | 1,298 | 0.02% | 1 | 3:23 |
| 96. | The Secret of Monkey Island | 1,285 | 0.02% | 3 | 42:56 |
| 97. | Bubble Bobble | 1,262 | 0.02% | 2 | 2:02:59 |
| 98. | Rainbow Islands | 1,232 | 0.02% | 2 | 1:38:42 |
| 99. | Yoshi's Cookie | 1,215 | 0.02% | 1 | 4:34 |
| 100. | Alien Hominid | 1,201 | 0.02% | 1 | 13:48 |
