| 1. | Episode 30: Evolution Emergency! | 433 | |
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| 2. | Episode 55: Puzzle Ponderings | 345 | |
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| 3. | Pokemon Sapphire Episode 1: Moving Day | 207 | Show | Pokémon Ruby and Sapphire
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| 4. | Pokemon LG Walkthrough Episode 1: The Adventure Begins... | 197 | Walkthrough | Pokémon FireRed and LeafGreen
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| 5. | Pokemon MD Red Episode 1: What Kind of Pokemon Are You? | 191 | | Pokémon Mystery Dungeon: Blue Rescue Team and Red Rescue Team
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| 6. | Episode 71: The Legend of the Origin! | 180 | |
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| 7. | Episode 197: The Ultimate Pokemon | 168 | Show |
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| 8. | Episode 141: Go, Go, Pokemon Ranger! | 139 | | Pokémon Ranger
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| 9. | Episode 37: Friends Never Say Goodbye! | 136 | |
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| 10. | Pokemon Yellow Episode 1: I'm Crazy For Chu! | 129 | Show | Pokémon Yellow
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| 11. | Episode 82: The Ultimate Challenge! | 117 | Show |
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| 12. | Episode 39: Make a Wish | 116 | |
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| 13. | Episode 6: Getting to Know You! | 109 | |
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| 14. | Episode 58: The Accursed One! | 107 | |
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| 15. | Episode 68: Twin Wills of Stone | 104 | | Final Fantasy
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| 16. | Episode 33: Gaining More Groudon! | 98 | |
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| 17. | Episode 78: Darkness Before Dawn! | 95 | | Before The Dawn
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| 18. | Episode 36: Battle for the Cosmos! | 94 | |
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| 19. | Pokemon Silver(E) Episode 1: New Year, New Gear, New World! | 91 | Show | Pokémon Gold and Silver
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| 20. | Episode 85: Wake up, Snorlax! | 89 | |
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| 21. | Episode 5: Matoya and the Crystal Eye | 87 | | Crystal Eyes
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| 22. | Episode 70: Awakening Gone Awry! | 86 | |
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| 23. | Episode 68: Under the Sea! | 86 | | Pokémon Ruby and Sapphire
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| 24. | Episode 11: A Bug in the System! | 85 | |
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| 25. | Episode 38: We Will Meet Again! | 85 | |
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| 26. | Episode 2: On Our Way! | 84 | |
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| 27. | Episode 61: Great Balls of Fire Pokemon! | 84 | |
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| 28. | Episode 173: Dragonite Warrior! | 83 | |
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| 29. | Episode 12: Getting the Bugs Out! | 82 | |
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| 30. | Episode 170: Keeping Cool with Lorelei! | 82 | |
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| 31. | Kirby's Adventure: Stage 7-6 | 82 | | Kirby's Adventure
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| 32. | Episode 100: Gary vs. Team Rocket | 81 | |
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| 33. | Episode 9: I Choose You, Pikachu! | 79 | |
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| 34. | Episode 171: The Rocky Fight With Bruno! | 78 | |
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| 35. | Episode 10: Insult to Evolution! | 76 | |
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| 36. | Episode 5: Into the Forest | 76 | |
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| 37. | Episode 24: Innocent! | 75 | |
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| 38. | Episode 26: Gardevoir Explains It All | 73 | |
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| 39. | Episode 175: Wii Are the Champions! | 73 | |
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| 40. | Episode 30: Team Ruby, Away! | 72 | |
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| 41. | Episode 25: Getting Close... | 72 | |
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| 42. | Episode 56: A Lost Wish, Found! | 71 | |
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| 43. | Earthbound Episode 1: Things That Go Bump In the Night | 70 | Show | Earthbound
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| 44. | Episode 90: Rare Pokemon Hunt! | 68 | |
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| 45. | Episode 203: Catching a Wave! | 67 | |
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| 46. | Episode 3: Special Delivery! | 67 | |
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| 47. | Episode 3: Advance Battle! | 66 | |
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| 48. | Episode 174: A Showdown For the Ages! | 65 | Show |
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| 49. | Episode 60: Listen to Your Heart... | 64 | |
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| 50. | Episode 127: Mew's Clues | 64 | |
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| 51. | Episode 10: Ai-yai-yai, I'm Your Little Beautifly! | 63 | |
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| 52. | Episode 4: Gotcha! | 63 | |
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| 53. | Episode 5: Trading Punches! | 62 | |
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| 54. | Episode 178: The Treasure of Mt. Ember! | 62 | |
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| 55. | Episode 17: A Date and a Duel with Brock! | 61 | |
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| 56. | Mini Game #1: Crane Fever | 61 | | Kirby's Adventure
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| 57. | Episode 23: Gardevoir Says... | 61 | |
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| 58. | Episode 194: Guardians of the Quest! | 59 | |
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| 59. | Episode 41: The Clue of the Clear Wing! | 59 | |
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| 60. | Episode 21: Caught in the Crossfire! | 59 | |
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| 61. | Episode 2: The Rise of Team Ruby! | 58 | |
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| 62. | Episode 16: Between a Rock Type and a Hard Place! | 58 | |
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| 63. | Episode 111: The Ultimate Showdown | 57 | Show |
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| 64. | Episode 8: First Battle | 57 | |
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| 65. | Episode 155: Defeating Giovanni For Good! | 57 | |
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| 66. | Episode 15: Ai-yai-yai, I'm Your Little...Butterfree! | 57 | |
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| 67. | Episode 43: Enter the Charizard | 56 | |
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| 68. | Episode 48: Mistress of Rainbows! | 56 | |
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| 69. | Special episode #1: A Showdown Remixed! (part 1) | 56 | Show |
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| 70. | Episode 58: "Secret" Ocean Hideout | 56 | |
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| 71. | Mini Game #3: Quick Draw | 56 | | Quick, Draw!
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| 72. | Episode 4: In Search of Birch! | 56 | |
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| 73. | Episode 8: War of The Wurmples! | 56 | |
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| 74. | Episode 156: Gary's Challenge | 55 | |
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| 75. | Episode 2: Hi, Neighbor! | 55 | |
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| 76. | Episode 73: Tamer of the Sea! | 55 | |
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| 77. | Episode 4: What to Catch... | 55 | |
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| 78. | Episode 7: There We Go... | 55 | |
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| 79. | Episode 18: Dreams of Betrayal | 54 | |
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| 80. | Episode 82(E): The Harmony of Fire, Lightning, and Hiro! | 54 | |
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| 81. | Episode 6: Training Daze... | 54 | |
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| 82. | Episode 83: New Inductees! | 53 | |
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| 83. | Episode 50: A Battle Worth Eons! | 53 | |
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| 84. | Episode 22: An Icy Cool Ally! | 53 | |
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| 85. | Episode 29: Team SOS!!! | 53 | |
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| 86. | Episode 14: Here Comes Gary! | 53 | |
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| 87. | Episode 59: The Not-so-Wonderful Cave... | 53 | |
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| 88. | Episode 115(E): The War of the Regions! | 52 | |
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| 89. | Episode 89: Wild Discovery! | 52 | |
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| 90. | Episode 39: Swimming Race With Misty! | 52 | |
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| 91. | Episode 114: Rolling Thunder! | 51 | | Rolling Thunder
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| 92. | Episode 19(E): Flying High With Falkner! | 51 | |
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| 93. | Episode 21: Hitting the Trail! | 51 | |
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| 94. | Episode 10: Rescue Gone Awry... | 51 | |
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| 95. | Episode 77: A Friendly Match! | 51 | |
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| 96. | Episode 57: Gengar's Request | 50 | |
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| 97. | Episode 172: Agatha's Ghostly Tale! | 50 | |
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| 98. | Episode 37: Teleporter Trouble... | 50 | |
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| 99. | Episode 19: So Long, Rescue Force | 50 | |
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| 100. | Episode 61: Rinse, Reset, Capture! | 50 | |
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